NO20G01890, NO20G01890 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of NO20G01890 vs. NCBI_GenBank
Match: EWM22030.1 (hypothetical protein Naga_100052g19 [Nannochloropsis gaditana]) HSP 1 Score: 435.3 bits (1118), Expect = 2.900e-118 Identity = 302/646 (46.75%), Postives = 371/646 (57.43%), Query Frame = 0 Query: 9 ALVSAPSVARAASKG-LRGNKPGTAAGSEDLSRHLMWTNPTLGAHHGSGDEGASGSGCVVSAEIASPCNMWAFVNGESLDATMGMGNGASHSTLALSGNISSVTLVLKSFCTAFSLPTVMLGGNPAPKPMVGATFDVCGVSVATDDSWVCINHFPEEGSWSSASFDDSAWPSAVTVDAEGLPSGLTFIGGAPETSDGGAGGGWETFCRKTVSLSEST--GNE--SVPVPXXXXXXXXXXXXXXWITQLTVEGNCSLAHADMHDVSVNFGHLLGLAEEHDVPPVNCTLLGHHSAPALTVPNAS-ACAHVIDPCIFDFSFSGTQDWMTLEMLKKAIHDKTFATIFDTRNSTSIEFCDVREII---ADLLPG-------VGG---------DEGDSTPST-----DVEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSVSLLPGF------------------------------------------------------------------------PSMIECDATVTFELAPQGLGALFQVNGINGPNVTVRATTCVNGTEVDTSLSLFDQDPSDGAYPLASNDNDESCARVPTSSTVSLFMPISIPVFLRVLNLDVEAGGVGLKVKCGVY 553 +L+S ++A A SKG LRGN ED SR L WTNP LGAHHG+ + A C + AE+ SPCNMWAFVNG+SLDA+MG GNG +HS++AL N SSVTLVLKSFCT FS P + G+P PMV A FDVCG V TD+SWVCINHFPEEGSWSS FDDSAWP+AV V+A GLP+G T+I G E+SD GGWETFCRKTVSL+E + G E P+P W+ +TVEGNCSL D+HD+S NFG L GL EEH PPV C L GH +P + + + CAH+ DPC+F F F+G Q ++T E++ +A+ D TFA+IFDTRNS+S EFC V+ + + PG VGG D ++ S+ DV+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX P+ +EC TVTFEL G G LF+++ N +V VRATTC+ T+ DT +S++DQ PS+G P+ASND+D++C PTSST S + V++ V N AG V LKV CGVY Sbjct: 8 SLISGVALASAGSKGLLRGNT------QEDSSRRLSWTNPLLGAHHGA--QPAPEEICALKAEVMSPCNMWAFVNGQSLDASMGFGNGPTHSSMALPQNTSSVTLVLKSFCTPFSFPVSAVEGSPV-HPMVAAKFDVCGTDVKTDESWVCINHFPEEGSWSSPDFDDSAWPNAVRVEASGLPTGFTYIAGPTESSDDSPHGGWETFCRKTVSLAEDSEEGAEPPPAPLPVEPALPGHPSSPHAWMMNMTVEGNCSLVDVDIHDLSTNFGFLFGLLEEHGHPPVECVLTGHRPSPEHSPTDTTWPCAHIPDPCLFQFVFTGVQAFLTPEIIMQALEDPTFASIFDTRNSSSSEFCQVQSVTIEDQETTPGPDPSSEDVGGSTVNMPQPLDNSENQVSSPEQPQDVDGSSQEGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSPYIPPTPVECGETVTFELGVDGPGILFKLDSANEGDVKVRATTCLESTKADTVVSVYDQKPSEGVEPIASNDDDDTCEVNPTSSTASTTLLDDSSVYIHVANKGAYAGAVSLKVHCGVY 644
BLAST of NO20G01890 vs. NCBI_GenBank
Match: EWM22031.1 (hypothetical protein Naga_100052g19 [Nannochloropsis gaditana]) HSP 1 Score: 427.2 bits (1097), Expect = 7.900e-116 Identity = 291/618 (47.09%), Postives = 356/618 (57.61%), Query Frame = 0 Query: 36 EDLSRHLMWTNPTLGAHHGSGDEGASGSGCVVSAEIASPCNMWAFVNGESLDATMGMGNGASHSTLALSGNISSVTLVLKSFCTAFSLPTVMLGGNPAPKPMVGATFDVCGVSVATDDSWVCINHFPEEGSWSSASFDDSAWPSAVTVDAEGLPSGLTFIGGAPETSDGGAGGGWETFCRKTVSLSEST--GNE--SVPVPXXXXXXXXXXXXXXWITQLTVEGNCSLAHADMHDVSVNFGHLLGLAEEHDVPPVNCTLLGHHSAPALTVPNAS-ACAHVIDPCIFDFSFSGTQDWMTLEMLKKAIHDKTFATIFDTRNSTSIEFCDVREII---ADLLPG-------VGG---------DEGDSTPST-----DVEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSVSLLPGF------------------------------------------------------------------------PSMIECDATVTFELAPQGLGALFQVNGINGPNVTVRATTCVNGTEVDTSLSLFDQDPSDGAYPLASNDNDESCARVPTSSTVSLFMPISIPVFLRVLNLDVEAGGVGLKVKCGVY 553 ED SR L WTNP LGAHHG+ + A C + AE+ SPCNMWAFVNG+SLDA+MG GNG +HS++AL N SSVTLVLKSFCT FS P + G+P PMV A FDVCG V TD+SWVCINHFPEEGSWSS FDDSAWP+AV V+A GLP+G T+I G E+SD GGWETFCRKTVSL+E + G E P+P W+ +TVEGNCSL D+HD+S NFG L GL EEH PPV C L GH +P + + + CAH+ DPC+F F F+G Q ++T E++ +A+ D TFA+IFDTRNS+S EFC V+ + + PG VGG D ++ S+ DV+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX P+ +EC TVTFEL G G LF+++ N +V VRATTC+ T+ DT +S++DQ PS+G P+ASND+D++C PTSST S + V++ V N AG V LKV CGVY Sbjct: 16 EDSSRRLSWTNPLLGAHHGA--QPAPEEICALKAEVMSPCNMWAFVNGQSLDASMGFGNGPTHSSMALPQNTSSVTLVLKSFCTPFSFPVSAVEGSPV-HPMVAAKFDVCGTDVKTDESWVCINHFPEEGSWSSPDFDDSAWPNAVRVEASGLPTGFTYIAGPTESSDDSPHGGWETFCRKTVSLAEDSEEGAEPPPAPLPVEPALPGHPSSPHAWMMNMTVEGNCSLVDVDIHDLSTNFGFLFGLLEEHGHPPVECVLTGHRPSPEHSPTDTTWPCAHIPDPCLFQFVFTGVQAFLTPEIIMQALEDPTFASIFDTRNSSSSEFCQVQSVTIEDQETTPGPDPSSEDVGGSTVNMPQPLDNSENQVSSPEQPQDVDGSSQEGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSPYIPPTPVECGETVTFELGVDGPGILFKLDSANEGDVKVRATTCLESTKADTVVSVYDQKPSEGVEPIASNDDDDTCEVNPTSSTASTTLLDDSSVYIHVANKGAYAGAVSLKVHCGVY 630 The following BLAST results are available for this feature:
BLAST of NO20G01890 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 2
Relationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO20G01890 ID=NO20G01890|Name=NO20G01890|organism=Nannochloropsis oceanica|type=gene|length=2250bpback to top protein sequence of NO20G01890.1 >NO20G01890.1-protein ID=NO20G01890.1-protein|Name=NO20G01890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=553bpback to top Synonyms
Publications
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