NO20G01890, NO20G01890 (gene) Nannochloropsis oceanica

Overview
NameNO20G01890
Unique NameNO20G01890
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2250
Alignment locationchr20:568194..570443 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:568194..570443 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO20G01890 vs. NCBI_GenBank
Match: EWM22030.1 (hypothetical protein Naga_100052g19 [Nannochloropsis gaditana])

HSP 1 Score: 435.3 bits (1118), Expect = 2.900e-118
Identity = 302/646 (46.75%), Postives = 371/646 (57.43%), Query Frame = 0
Query:    9 ALVSAPSVARAASKG-LRGNKPGTAAGSEDLSRHLMWTNPTLGAHHGSGDEGASGSGCVVSAEIASPCNMWAFVNGESLDATMGMGNGASHSTLALSGNISSVTLVLKSFCTAFSLPTVMLGGNPAPKPMVGATFDVCGVSVATDDSWVCINHFPEEGSWSSASFDDSAWPSAVTVDAEGLPSGLTFIGGAPETSDGGAGGGWETFCRKTVSLSEST--GNE--SVPVPXXXXXXXXXXXXXXWITQLTVEGNCSLAHADMHDVSVNFGHLLGLAEEHDVPPVNCTLLGHHSAPALTVPNAS-ACAHVIDPCIFDFSFSGTQDWMTLEMLKKAIHDKTFATIFDTRNSTSIEFCDVREII---ADLLPG-------VGG---------DEGDSTPST-----DVEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSVSLLPGF------------------------------------------------------------------------PSMIECDATVTFELAPQGLGALFQVNGINGPNVTVRATTCVNGTEVDTSLSLFDQDPSDGAYPLASNDNDESCARVPTSSTVSLFMPISIPVFLRVLNLDVEAGGVGLKVKCGVY 553
            +L+S  ++A A SKG LRGN        ED SR L WTNP LGAHHG+  + A    C + AE+ SPCNMWAFVNG+SLDA+MG GNG +HS++AL  N SSVTLVLKSFCT FS P   + G+P   PMV A FDVCG  V TD+SWVCINHFPEEGSWSS  FDDSAWP+AV V+A GLP+G T+I G  E+SD    GGWETFCRKTVSL+E +  G E    P+P              W+  +TVEGNCSL   D+HD+S NFG L GL EEH  PPV C L GH  +P  +  + +  CAH+ DPC+F F F+G Q ++T E++ +A+ D TFA+IFDTRNS+S EFC V+ +     +  PG       VGG         D  ++  S+     DV+       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                                                 P+ +EC  TVTFEL   G G LF+++  N  +V VRATTC+  T+ DT +S++DQ PS+G  P+ASND+D++C   PTSST S  +     V++ V N    AG V LKV CGVY
Sbjct:    8 SLISGVALASAGSKGLLRGNT------QEDSSRRLSWTNPLLGAHHGA--QPAPEEICALKAEVMSPCNMWAFVNGQSLDASMGFGNGPTHSSMALPQNTSSVTLVLKSFCTPFSFPVSAVEGSPV-HPMVAAKFDVCGTDVKTDESWVCINHFPEEGSWSSPDFDDSAWPNAVRVEASGLPTGFTYIAGPTESSDDSPHGGWETFCRKTVSLAEDSEEGAEPPPAPLPVEPALPGHPSSPHAWMMNMTVEGNCSLVDVDIHDLSTNFGFLFGLLEEHGHPPVECVLTGHRPSPEHSPTDTTWPCAHIPDPCLFQFVFTGVQAFLTPEIIMQALEDPTFASIFDTRNSSSSEFCQVQSVTIEDQETTPGPDPSSEDVGGSTVNMPQPLDNSENQVSSPEQPQDVDGSSQEGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSPYIPPTPVECGETVTFELGVDGPGILFKLDSANEGDVKVRATTCLESTKADTVVSVYDQKPSEGVEPIASNDDDDTCEVNPTSSTASTTLLDDSSVYIHVANKGAYAGAVSLKVHCGVY 644          
BLAST of NO20G01890 vs. NCBI_GenBank
Match: EWM22031.1 (hypothetical protein Naga_100052g19 [Nannochloropsis gaditana])

HSP 1 Score: 427.2 bits (1097), Expect = 7.900e-116
Identity = 291/618 (47.09%), Postives = 356/618 (57.61%), Query Frame = 0
Query:   36 EDLSRHLMWTNPTLGAHHGSGDEGASGSGCVVSAEIASPCNMWAFVNGESLDATMGMGNGASHSTLALSGNISSVTLVLKSFCTAFSLPTVMLGGNPAPKPMVGATFDVCGVSVATDDSWVCINHFPEEGSWSSASFDDSAWPSAVTVDAEGLPSGLTFIGGAPETSDGGAGGGWETFCRKTVSLSEST--GNE--SVPVPXXXXXXXXXXXXXXWITQLTVEGNCSLAHADMHDVSVNFGHLLGLAEEHDVPPVNCTLLGHHSAPALTVPNAS-ACAHVIDPCIFDFSFSGTQDWMTLEMLKKAIHDKTFATIFDTRNSTSIEFCDVREII---ADLLPG-------VGG---------DEGDSTPST-----DVEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSVSLLPGF------------------------------------------------------------------------PSMIECDATVTFELAPQGLGALFQVNGINGPNVTVRATTCVNGTEVDTSLSLFDQDPSDGAYPLASNDNDESCARVPTSSTVSLFMPISIPVFLRVLNLDVEAGGVGLKVKCGVY 553
            ED SR L WTNP LGAHHG+  + A    C + AE+ SPCNMWAFVNG+SLDA+MG GNG +HS++AL  N SSVTLVLKSFCT FS P   + G+P   PMV A FDVCG  V TD+SWVCINHFPEEGSWSS  FDDSAWP+AV V+A GLP+G T+I G  E+SD    GGWETFCRKTVSL+E +  G E    P+P              W+  +TVEGNCSL   D+HD+S NFG L GL EEH  PPV C L GH  +P  +  + +  CAH+ DPC+F F F+G Q ++T E++ +A+ D TFA+IFDTRNS+S EFC V+ +     +  PG       VGG         D  ++  S+     DV+       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                                                 P+ +EC  TVTFEL   G G LF+++  N  +V VRATTC+  T+ DT +S++DQ PS+G  P+ASND+D++C   PTSST S  +     V++ V N    AG V LKV CGVY
Sbjct:   16 EDSSRRLSWTNPLLGAHHGA--QPAPEEICALKAEVMSPCNMWAFVNGQSLDASMGFGNGPTHSSMALPQNTSSVTLVLKSFCTPFSFPVSAVEGSPV-HPMVAAKFDVCGTDVKTDESWVCINHFPEEGSWSSPDFDDSAWPNAVRVEASGLPTGFTYIAGPTESSDDSPHGGWETFCRKTVSLAEDSEEGAEPPPAPLPVEPALPGHPSSPHAWMMNMTVEGNCSLVDVDIHDLSTNFGFLFGLLEEHGHPPVECVLTGHRPSPEHSPTDTTWPCAHIPDPCLFQFVFTGVQAFLTPEIIMQALEDPTFASIFDTRNSSSSEFCQVQSVTIEDQETTPGPDPSSEDVGGSTVNMPQPLDNSENQVSSPEQPQDVDGSSQEGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSPYIPPTPVECGETVTFELGVDGPGILFKLDSANEGDVKVRATTCLESTKADTVVSVYDQKPSEGVEPIASNDDDDTCEVNPTSSTASTTLLDDSSVYIHVANKGAYAGAVSLKVHCGVY 630          
The following BLAST results are available for this feature:
BLAST of NO20G01890 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM22030.12.900e-11846.75hypothetical protein Naga_100052g19 [Nannochlorops... [more]
EWM22031.17.900e-11647.09hypothetical protein Naga_100052g19 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G01890.1NO20G01890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G01890.1NO20G01890.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G01890 ID=NO20G01890|Name=NO20G01890|organism=Nannochloropsis oceanica|type=gene|length=2250bp
GGAGTCGCCAGAAATTTTGTTCGGCACACTTATGGGCGCGCTGCGCAGCT
CTTGCACTCGTTTCCTTGTAATTCGCACATATCTGCCATTGGTAGAAGAC
CGCCGAGTGCACAAATAATTTCAAGAGCTCACTAGAACGAGGAATAAGCC
AGCGCTATCTCGACGGTGCCGTTTTGACGGCGTGTGCCGCATTTGGTTAT
GTCTGCGGCTGAACGCAGCAGCACCCAGAAGCTTGCAGTCCAGGCTCTCT
CTTGTTTCACAAACTGACAGGCGCCAAATGCGCGTGGTCAAAGACGCACA
AAGGGGTGCACTTCACACAGCGTAACAAAAAGGCCATGTCCCATTGGACC
TTGCAGGGCGCTTCTGTGCAGGCCTTAAATGAAAGGCCGACCCAGGTTCA
TCCTTCCATCTGAATTCAAATTACAGCCCCTCCCCCCCAACACAGACGTA
CAAAAGACATCATGAAATTCATTCCAACTCTCATCGCACTGGTGAGCGCG
CCATCTGTGGCCAGGGCCGCCAGCAAAGGCTTGgtaagtgacttgtacgt
gtgtccctcatccgacctgcccctttcctacccgaagcgtccaggcttgc
acgcccctgaagcagacgaaaggctcactcctaccctggtcgttcccttc
ttcttaccaacagCGCGGAAACAAGCCTGGTACTGCGGCGGGTTCTGAGG
ACCTGTCTCGTCACCTGATGTGGACGAACCCGACCCTCGGCGCGCACCAC
GGCAGCGGAGACGAGGGCGCCAGCGGCAGTGGCTGCGTCGTGTCGGCGGA
AATCGCTTCGCCGTGCAACATGTGGGCCTTTGTGAACGGCGAGTCGTTGG
ACGCGACCATGGGCATGGGCAACGGCGCCTCCCACTCTACGCTTGCCCTG
TCGGGGAACATCAGCAGCGTGACGCTCGTGCTCAAGTCCTTCTGCACGGC
CTTCTCCTTGCCCACTGTTATGTTGGGTGGGAACCCCGCGCCCAAGCCCA
TGGTGGGGGCCACGTTTGATGTGTGTGGCGTGTCCGTGGCGACCGACGAC
TCGTGGGTGTGCATCAACCACTTTCCCGAGGAGGGCAGCTGGAGCTCCGC
CTCCTTCGATGACAGCGCTTGGCCCTCTGCCGTGACGGTAGATGCCGAAG
GGCTTCCCAGTGGGTTGACGTTTATTGGTGGCGCGCCGGAGACGTCCGAC
GGCGGCGCTGGTGGTGGATGGGAGACGTTCTGCCGCAAGACCGTGTCTCT
TTCTGAGAGCACCGGCAATGAGAGTGTGCCTGTCCCTGCCGTGCCGGCCA
CCCCTGCGCTGCCCTCGTTGCCCCCGGTCTGGATCACGCAATTGACTGTG
GAGGGTAACTGCAGCCTGGCTCACGCGGACATGCACGATGTGAGTGTGAA
CTTTGGCCACCTCCTCGGTCTTGCGGAGGAGCACGACGTACCGCCCGTGA
ACTGCACCTTGCTGGGCCACCACTCGGCACCCGCTCTGACGGTGCCCAAC
GCGTCTGCGTGCGCGCACGTAATCGACCCTTGCATCTTCGACTTCAGCTT
CAGCGGCACCCAGGACTGGATGACGCTGGAAATGCTGAAGAAGGCCATCC
ACGACAAGACTTTCGCCACCATCTTCGACACCCGCAACTCCACGTCCATC
GAGTTCTGCGATGTGCGTGAAATCATCGCCGATCTGCTGCCTGGGGTGGG
TGGCGACGAGGGGGACTCTACTCCTTCCACAGACGTTGAGGATGGAAGCA
ACACGTCCTCCGAATCAGCCTCTCGGCCGGAGGACGGCTCGACTGGTGCC
GAGTCCGGCTCTGAGGATGACGATGATGCGGAGGACGGGGAGGATGAGGC
GGAAGATCCGGCTGTCGAGGATGATGGGTCCGTGAGCTTGCTTCCCGGCT
TTCCTTCGATGATCGAGTGCGACGCGACTGTGACATTCGAGCTTGCCCCG
CAAGGGCTCGGAGCCTTGTTCCAGGTGAACGGCATCAATGGGCCGAACGT
GACGGTGCGGGCCACGACATGCGTGAATGGCACGGAGGTGGACACGAGCC
TCAGCCTGTTTGACCAGGATCCGTCCGACGGCGCGTACCCTCTGGCCAGC
AACGACAACGACGAGAGCTGTGCCAGGGTCCCGACCTCGTCCACGGTCAG
CTTGTTCATGCCCATCAGCATCCCCGTCTTCCTGCGCGTGCTCAACTTGG
ACGTGGAAGCGGGAGGCGTGGGCCTCAAAGTAAAGTGCGGAGTTTATTAA
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protein sequence of NO20G01890.1

>NO20G01890.1-protein ID=NO20G01890.1-protein|Name=NO20G01890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=553bp
MKFIPTLIALVSAPSVARAASKGLRGNKPGTAAGSEDLSRHLMWTNPTLG
AHHGSGDEGASGSGCVVSAEIASPCNMWAFVNGESLDATMGMGNGASHST
LALSGNISSVTLVLKSFCTAFSLPTVMLGGNPAPKPMVGATFDVCGVSVA
TDDSWVCINHFPEEGSWSSASFDDSAWPSAVTVDAEGLPSGLTFIGGAPE
TSDGGAGGGWETFCRKTVSLSESTGNESVPVPAVPATPALPSLPPVWITQ
LTVEGNCSLAHADMHDVSVNFGHLLGLAEEHDVPPVNCTLLGHHSAPALT
VPNASACAHVIDPCIFDFSFSGTQDWMTLEMLKKAIHDKTFATIFDTRNS
TSIEFCDVREIIADLLPGVGGDEGDSTPSTDVEDGSNTSSESASRPEDGS
TGAESGSEDDDDAEDGEDEAEDPAVEDDGSVSLLPGFPSMIECDATVTFE
LAPQGLGALFQVNGINGPNVTVRATTCVNGTEVDTSLSLFDQDPSDGAYP
LASNDNDESCARVPTSSTVSLFMPISIPVFLRVLNLDVEAGGVGLKVKCG
VY*
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Synonyms
Publications