NO20G01880, NO20G01880 (gene) Nannochloropsis oceanica

Overview
NameNO20G01880
Unique NameNO20G01880
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2746
Alignment locationchr20:563996..566741 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:563996..566741 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO20G01880 vs. NCBI_GenBank
Match: EWM22030.1 (hypothetical protein Naga_100052g19 [Nannochloropsis gaditana])

HSP 1 Score: 433.0 bits (1112), Expect = 1.400e-117
Identity = 301/646 (46.59%), Postives = 371/646 (57.43%), Query Frame = 0
Query:    9 ALVSAPSVARAASKG-LRGNKPGAAAGSEDLSRHLMWTDPTLGAHHGSGDEGASGSGCVVSAEIASPCNMWAFVNGESLDATMGMGNGASHSTLALSGNISSVTLVLKSFCTAFSLPTVMLGGNPAPQPMVGATFDVCGVSVATDDSWVCINHFPEEGSWSSASFDDSAWPSAVTVDAEGLPSGLTFIGGAPETSDGGAGGGWETFCRKTVSLSEST--GNE--SVPVPXXXXXXXXXXXXXXWITQLTVEGNCSLAHADMHDVSVNFGHLLGLAEEHDVPPVNCTLLGHHSAPALTVPNAS-ACAHVIDPCIFDFSFSGTQDWMTLEMLKKAIHDKTFATIFDTRNSTSIEFCDVREII---ADLLPG-------VGG---------DEGDSTPST-----DVEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSVSLLPGF------------------------------------------------------------------------PSMIECDATVTFELAPQGLGALFQVNGINGPNVTVRATTCVNGTEVDTSLSLFDQDPSDGAYPLASNDNDESCARVPTSSTVSLFMPISIPVFLRVLNLDVEAGGVGLKVKCGVY 553
            +L+S  ++A A SKG LRGN        ED SR L WT+P LGAHHG+  + A    C + AE+ SPCNMWAFVNG+SLDA+MG GNG +HS++AL  N SSVTLVLKSFCT FS P   + G+P   PMV A FDVCG  V TD+SWVCINHFPEEGSWSS  FDDSAWP+AV V+A GLP+G T+I G  E+SD    GGWETFCRKTVSL+E +  G E    P+P              W+  +TVEGNCSL   D+HD+S NFG L GL EEH  PPV C L GH  +P  +  + +  CAH+ DPC+F F F+G Q ++T E++ +A+ D TFA+IFDTRNS+S EFC V+ +     +  PG       VGG         D  ++  S+     DV+       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                                                 P+ +EC  TVTFEL   G G LF+++  N  +V VRATTC+  T+ DT +S++DQ PS+G  P+ASND+D++C   PTSST S  +     V++ V N    AG V LKV CGVY
Sbjct:    8 SLISGVALASAGSKGLLRGNT------QEDSSRRLSWTNPLLGAHHGA--QPAPEEICALKAEVMSPCNMWAFVNGQSLDASMGFGNGPTHSSMALPQNTSSVTLVLKSFCTPFSFPVSAVEGSPV-HPMVAAKFDVCGTDVKTDESWVCINHFPEEGSWSSPDFDDSAWPNAVRVEASGLPTGFTYIAGPTESSDDSPHGGWETFCRKTVSLAEDSEEGAEPPPAPLPVEPALPGHPSSPHAWMMNMTVEGNCSLVDVDIHDLSTNFGFLFGLLEEHGHPPVECVLTGHRPSPEHSPTDTTWPCAHIPDPCLFQFVFTGVQAFLTPEIIMQALEDPTFASIFDTRNSSSSEFCQVQSVTIEDQETTPGPDPSSEDVGGSTVNMPQPLDNSENQVSSPEQPQDVDGSSQEGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSPYIPPTPVECGETVTFELGVDGPGILFKLDSANEGDVKVRATTCLESTKADTVVSVYDQKPSEGVEPIASNDDDDTCEVNPTSSTASTTLLDDSSVYIHVANKGAYAGAVSLKVHCGVY 644          
BLAST of NO20G01880 vs. NCBI_GenBank
Match: EWM22031.1 (hypothetical protein Naga_100052g19 [Nannochloropsis gaditana])

HSP 1 Score: 426.0 bits (1094), Expect = 1.800e-115
Identity = 290/618 (46.93%), Postives = 356/618 (57.61%), Query Frame = 0
Query:   36 EDLSRHLMWTDPTLGAHHGSGDEGASGSGCVVSAEIASPCNMWAFVNGESLDATMGMGNGASHSTLALSGNISSVTLVLKSFCTAFSLPTVMLGGNPAPQPMVGATFDVCGVSVATDDSWVCINHFPEEGSWSSASFDDSAWPSAVTVDAEGLPSGLTFIGGAPETSDGGAGGGWETFCRKTVSLSEST--GNE--SVPVPXXXXXXXXXXXXXXWITQLTVEGNCSLAHADMHDVSVNFGHLLGLAEEHDVPPVNCTLLGHHSAPALTVPNAS-ACAHVIDPCIFDFSFSGTQDWMTLEMLKKAIHDKTFATIFDTRNSTSIEFCDVREII---ADLLPG-------VGG---------DEGDSTPST-----DVEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSVSLLPGF------------------------------------------------------------------------PSMIECDATVTFELAPQGLGALFQVNGINGPNVTVRATTCVNGTEVDTSLSLFDQDPSDGAYPLASNDNDESCARVPTSSTVSLFMPISIPVFLRVLNLDVEAGGVGLKVKCGVY 553
            ED SR L WT+P LGAHHG+  + A    C + AE+ SPCNMWAFVNG+SLDA+MG GNG +HS++AL  N SSVTLVLKSFCT FS P   + G+P   PMV A FDVCG  V TD+SWVCINHFPEEGSWSS  FDDSAWP+AV V+A GLP+G T+I G  E+SD    GGWETFCRKTVSL+E +  G E    P+P              W+  +TVEGNCSL   D+HD+S NFG L GL EEH  PPV C L GH  +P  +  + +  CAH+ DPC+F F F+G Q ++T E++ +A+ D TFA+IFDTRNS+S EFC V+ +     +  PG       VGG         D  ++  S+     DV+       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                                                 P+ +EC  TVTFEL   G G LF+++  N  +V VRATTC+  T+ DT +S++DQ PS+G  P+ASND+D++C   PTSST S  +     V++ V N    AG V LKV CGVY
Sbjct:   16 EDSSRRLSWTNPLLGAHHGA--QPAPEEICALKAEVMSPCNMWAFVNGQSLDASMGFGNGPTHSSMALPQNTSSVTLVLKSFCTPFSFPVSAVEGSPV-HPMVAAKFDVCGTDVKTDESWVCINHFPEEGSWSSPDFDDSAWPNAVRVEASGLPTGFTYIAGPTESSDDSPHGGWETFCRKTVSLAEDSEEGAEPPPAPLPVEPALPGHPSSPHAWMMNMTVEGNCSLVDVDIHDLSTNFGFLFGLLEEHGHPPVECVLTGHRPSPEHSPTDTTWPCAHIPDPCLFQFVFTGVQAFLTPEIIMQALEDPTFASIFDTRNSSSSEFCQVQSVTIEDQETTPGPDPSSEDVGGSTVNMPQPLDNSENQVSSPEQPQDVDGSSQEGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSPYIPPTPVECGETVTFELGVDGPGILFKLDSANEGDVKVRATTCLESTKADTVVSVYDQKPSEGVEPIASNDDDDTCEVNPTSSTASTTLLDDSSVYIHVANKGAYAGAVSLKVHCGVY 630          
The following BLAST results are available for this feature:
BLAST of NO20G01880 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM22030.11.400e-11746.59hypothetical protein Naga_100052g19 [Nannochlorops... [more]
EWM22031.11.800e-11546.93hypothetical protein Naga_100052g19 [Nannochlorops... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002728NSK002728Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G01880.1NO20G01880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100052g19gene8388Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G01880.1NO20G01880.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G01880 ID=NO20G01880|Name=NO20G01880|organism=Nannochloropsis oceanica|type=gene|length=2746bp
AACGGACCGGATTTCAGTTGGCGGGCGAAGTCGCCAATTCCAGTATTCGC
TTATGGGCTTATGGGTGCGCAGCCCTTGCTGTCGTTTTCTTTTTGTGGTG
CAGGTGCAAGATGCAAGGTGTTCATGCGCAGGCTATAGGCAGAAGGCTGC
CGGGGGCAGAAAATTCATAAAGACGAGAGCGAGAACGATTCTGGCGGTGT
CGTATTCACGGCGTGTGCGGCATTTGGTTAGTATTTGGTTCATGTGCGTC
TGTGGATGCAGCGGCATGCAGAAGCTTGCAGTCCAGGCTCTCTCTCGAAA
GCTCAGACTTAATATACCGATGGACGCTAAATGCGCACGGCTAAGAACGC
TCTGAGAGATGCACTGCACACAGAGACACAATCGAAGGCGATGTCCTGTT
AGTATGAGACGCTGCTTTGCCTTACTCTGCGTCGACCTCCAACGAAAGGC
CGACCCAGGTTCATCCTTCCATCTTCTTAATTCAAACAGAAGTGACATGA
CATAATATATTACCCATGACACCCCTCACGCGCACCCACACAGCAAGGGT
AATACTAAGGCCATGAAGCTGACTACAGCTCTCATCGCACTGGTGAGCGC
GCCATCTGTGGCCAGGGCCGCCAGCAAAGGCTTGgtaagtgacttgtacg
tgtgtccctcatccgacctgctcctttcctacccgaagcgtccaggcttg
cacgcccctgaagcagacgaaaggctcactcctaccctggtcgttccctt
cttcttaccaacagCGCGGAAACAAGCCTGGTGCTGCGGCGGGTTCTGAG
GACCTGTCTCGTCACCTGATGTGGACGGACCCGACCCTCGGCGCGCACCA
CGGCAGCGGAGACGAGGGCGCCAGCGGCAGTGGCTGCGTCGTGTCGGCGG
AAATCGCTTCGCCGTGCAACATGTGGGCCTTTGTGAACGGCGAGTCGTTG
GACGCGACCATGGGCATGGGCAACGGCGCCTCCCACTCTACGCTTGCCCT
GTCGGGGAACATCAGCAGCGTGACGCTCGTGCTCAAGTCCTTCTGCACGG
CCTTCTCCTTGCCCACTGTTATGTTGGGTGGGAACCCCGCGCCCCAGCCC
ATGGTGGGGGCCACGTTTGATGTGTGTGGCGTGTCCGTGGCGACCGACGA
CTCGTGGGTGTGCATCAACCACTTTCCCGAGGAGGGCAGCTGGAGCTCCG
CCTCCTTCGATGACAGCGCTTGGCCCTCTGCCGTGACGGTAGATGCCGAA
GGGCTTCCCAGTGGGTTGACGTTTATTGGTGGCGCGCCGGAGACGTCCGA
CGGCGGCGCTGGTGGTGGATGGGAGACGTTCTGCCGCAAGACCGTGTCTC
TTTCTGAGAGCACCGGCAATGAGAGTGTGCCTGTCCCTGCCGTGCCGGCC
ACCCCTGCGCTGCCCTCGTTGCCCCCGGTCTGGATCACGCAATTGACTGT
GGAGGGTAACTGCAGCCTGGCTCACGCGGACATGCACGATGTGAGTGTGA
ACTTTGGCCACCTCCTCGGTCTTGCGGAGGAGCACGACGTACCGCCCGTG
AACTGCACCTTGCTGGGCCACCACTCGGCACCCGCTCTGACGGTGCCCAA
CGCGTCTGCGTGCGCGCACGTAATCGACCCTTGCATCTTCGACTTCAGCT
TCAGCGGCACCCAGGACTGGATGACGCTGGAAATGCTGAAGAAGGCCATC
CACGACAAGACTTTCGCCACCATCTTCGACACCCGCAACTCCACGTCCAT
CGAGTTCTGCGATGTGCGTGAAATCATCGCCGATCTGCTGCCTGGGGTGG
GTGGCGACGAGGGGGACTCTACTCCTTCCACAGACGTTGAGGATGGAAGC
AACACGTCCTCCGAATCAGCCTCTCGGCCGGAGGACGGCTCGACTGGTGC
CGAGTCCGGCTCTGAGGATGACGATGATGCGGAGGACGGGGAGGATGAGG
CGGAAGATCCGGCTGTCGAGGATGATGGGTCCGTGAGCTTGCTTCCCGGC
TTTCCTTCGATGATCGAGTGCGACGCGACTGTGACATTCGAGCTTGCCCC
GCAAGGGCTCGGAGCCTTGTTCCAGGTGAACGGCATCAATGGGCCGAACG
TGACGGTGCGGGCCACGACATGCGTGAATGGCACGGAGGTGGACACGAGC
CTCAGCCTGTTTGACCAGGATCCGTCCGACGGCGCGTACCCTCTGGCCAG
CAACGACAACGACGAGAGCTGTGCCAGGGTCCCGACCTCGTCCACGGTCA
GCTTGTTCATGCCCATCAGCATCCCCGTCTTCCTGCGCGTGCTCAACTTG
GACGTGGAAGCGGGAGGCGTGGGCCTCAAAGTAAAGTGCGGAGTTTATTA
AGATAGCAGAGATTAGAGAGGAAGGGTATTGCATGTTGCATGAAGATTTT
CCTCCGTTTTTTTTTTCAATTAAGACGGTATTAGATGAAATGCGCGCAGG
TTTTGGAGACACAGTTGTTTGAGCGAGTGAACGGAAAAAGAAAGGGAAAG
ACACGATAGAGACACGAAGGGAAGAGATGGAGAGATAACTAGGCGTGGAT
GGACAGAAGGGCTACACCCCAAGCAGTTTTACATACATTGATCCTGGCCC
GCGGGAGCAGGGTATTGACGGACACAATTTGAAGACAGATGATCACAATT
CTTGACCGCGGTAGCGGCATGGAAAAAGTATTATTTGGAACAAATCGGAG
GGGTGTAAGAAAGATGAAGAAAGTAAAAGTTGAGCTTTGCCATGAG
back to top

protein sequence of NO20G01880.1

>NO20G01880.1-protein ID=NO20G01880.1-protein|Name=NO20G01880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=553bp
MKLTTALIALVSAPSVARAASKGLRGNKPGAAAGSEDLSRHLMWTDPTLG
AHHGSGDEGASGSGCVVSAEIASPCNMWAFVNGESLDATMGMGNGASHST
LALSGNISSVTLVLKSFCTAFSLPTVMLGGNPAPQPMVGATFDVCGVSVA
TDDSWVCINHFPEEGSWSSASFDDSAWPSAVTVDAEGLPSGLTFIGGAPE
TSDGGAGGGWETFCRKTVSLSESTGNESVPVPAVPATPALPSLPPVWITQ
LTVEGNCSLAHADMHDVSVNFGHLLGLAEEHDVPPVNCTLLGHHSAPALT
VPNASACAHVIDPCIFDFSFSGTQDWMTLEMLKKAIHDKTFATIFDTRNS
TSIEFCDVREIIADLLPGVGGDEGDSTPSTDVEDGSNTSSESASRPEDGS
TGAESGSEDDDDAEDGEDEAEDPAVEDDGSVSLLPGFPSMIECDATVTFE
LAPQGLGALFQVNGINGPNVTVRATTCVNGTEVDTSLSLFDQDPSDGAYP
LASNDNDESCARVPTSSTVSLFMPISIPVFLRVLNLDVEAGGVGLKVKCG
VY*
back to top
Synonyms
Publications