NO20G01810, NO20G01810 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO20G01810 vs. NCBI_GenBank
Match: EWM22040.1 (Peptidase S24/S26A/S26B/S26C, beta-ribbon domain protein [Nannochloropsis gaditana]) HSP 1 Score: 225.7 bits (574), Expect = 1.000e-55 Identity = 105/160 (65.62%), Postives = 127/160 (79.38%), Query Frame = 0 Query: 5 AWFSSGGWRRFVSTLGLLPVAITIHDMVGSIMLVDGSSMQPTLSRDSEGSPNDSRDLILVAKWPTKVWRQYRKGDMVVIRSPLDPNSKVITRLTGTEREWRTRREGFRREPIPEGFCWVTG-----SEDSETYGPIPLALIEGRVSYIVWPPSRMGPVPK 160 A+ SSG RR +STL LPV + +++++GS M VDG SM PTL+ GS SRDL+ VAKWP KVWR+YRKGD+VV+RSP+DP+ +VI RLTG EREWRTRR G R+EPIPEGFCWVTG SEDSETYGP+PLALIEG V+Y+VWP +R+GPVPK Sbjct: 9 AFASSGNVRRLLSTLSFLPVGVAVNELIGSFMFVDGRSMHPTLNPAYSGSYTSSRDLVFVAKWPIKVWRRYRKGDVVVLRSPVDPDVEVIRRLTGREREWRTRRVGMRQEPIPEGFCWVTGDNPLYSEDSETYGPVPLALIEGWVAYVVWPLNRVGPVPK 168
BLAST of NO20G01810 vs. NCBI_GenBank
Match: XP_005649773.1 (LexA/Signal peptidase [Coccomyxa subellipsoidea C-169] >EIE25229.1 LexA/Signal peptidase [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 122.5 bits (306), Expect = 1.200e-24 Identity = 68/152 (44.74%), Postives = 89/152 (58.55%), Query Frame = 0 Query: 12 WRRFVSTLGLLPVAITIHDMVGSIMLVDGSSMQPTLSRDSEGSPNDSRDLILVAKWPTKVWRQYRKGDMVVIRSPLDPNSKVITRLTGTEREWRTRREGFRREPIPEGFCWVTG-----SEDSET-YGPIPLALIEGRVSYIVWPPSRMGPV 158 WR T L+PV I + D++ V G SMQPTL+ +S DL+L KW K++R Y +GD+V++RSP DP+ +I RL E +W T IP+G CWV G S DS + +GP+P+ALIEGRV YI WPPSR G V Sbjct: 6 WR----TAKLVPVVIAVEDLLYGPAYVSGRSMQPTLNPESA----TGHDLVLADKWSIKLYR-YNRGDVVLLRSPEDPDMTLIKRLLALEGDWVTIPGSLELAKIPKGHCWVEGDNPEFSADSRSKFGPVPVALIEGRVQYIFWPPSRAGRV 148
BLAST of NO20G01810 vs. NCBI_GenBank
Match: OAE18524.1 (hypothetical protein AXG93_625s1130 [Marchantia polymorpha subsp. ruderalis] >PTQ38130.1 hypothetical protein MARPO_0053s0064 [Marchantia polymorpha]) HSP 1 Score: 117.5 bits (293), Expect = 3.900e-23 Identity = 59/151 (39.07%), Postives = 93/151 (61.59%), Query Frame = 0 Query: 13 RRFVSTLGL-LPVAITIHDMVGSIMLVDGSSMQPTLSRDSEGSPNDSRDLILVAKWPTKVWRQYRKGDMVVIRSPLDPNSKVITRLTGTEREWRTRREGFRREPIPEGFCWVTG-----SEDSETYGPIPLALIEGRVSYIVWPPSRMGPV 158 RRF+ + + IT+ D GS++ ++G SMQPT + + SP S+D+++V K+ + + + +GD+V RSP DP ++ RL + +W T + IP+G CWV G S DS+ +GPIP+AL+ GRV+++VWPP R+GPV Sbjct: 12 RRFLKGAAVGVAAGITVADRFGSVVRLNGRSMQPTFNPEDSDSP--SKDIVVVEKFCLRNF-SFTRGDVVAFRSPQDPKEYLVKRLIALQEDWITVPGTYEILQIPKGHCWVEGDNVDVSLDSKEFGPIPIALMRGRVTHVVWPPQRLGPV 159
BLAST of NO20G01810 vs. NCBI_GenBank
Match: EUC57835.1 (inner membrane protease subunit 2 [Rhizoctonia solani AG-3 Rhs1AP] >KEP54731.1 inner membrane protease subunit 2 [Rhizoctonia solani 123E]) HSP 1 Score: 115.5 bits (288), Expect = 1.500e-22 Identity = 57/156 (36.54%), Postives = 90/156 (57.69%), Query Frame = 0 Query: 11 GWRRFVSTLGLLPVAITIHDMVGSIMLVDGSSMQPTLSRDSEGSPNDSRDLILVAKWPTKVWRQYRKGDMVVIRSPLDPNSKVITRLTGTEREWRTRREGF--RREPIPEGFCWVTGSE-----DSETYGPIPLALIEGRVSYIVWPPSRMGPVPK 160 G R + L ++P +T +VG+I +V GSSMQP L+ + RD++LV +W +YR+GD+V +RSPLDPN ++ R+ + + + +P+G+ WV G E DS +GP+PL LIE R++ ++WP R+GPVP+ Sbjct: 3 GRRELLRLLWIIPPTLTFTSLVGTINVVSGSSMQPALNPEGP----YQRDIVLVDRWSIVARHRYRRGDVVSLRSPLDPNLIIVKRILALGGDMLETLPPYPDKEVRVPDGYAWVEGDEPFRSRDSNHFGPVPLGLIESRIALVLWPFKRLGPVPQ 154
BLAST of NO20G01810 vs. NCBI_GenBank
Match: CBJ32256.1 (Imp2 homolog, Inner Membrane Peptidase complex subunit 2 [Ectocarpus siliculosus]) HSP 1 Score: 113.2 bits (282), Expect = 7.300e-22 Identity = 57/145 (39.31%), Postives = 85/145 (58.62%), Query Frame = 0 Query: 17 STLGLLPVAITIHDMVGSIMLVDGSSMQPTLSRDSEGSPNDSRDLILVAKWPTKVWRQ-YRKGDMVVIRSPLDPNSKVITRLTGTEREW-RTRREGFRREPIPEGFCWVTG-----SEDSETYGPIPLALIEGRVSYIVWPPSRM 155 ++L +PVA+ HD++GS + V+G SMQP ++ L +V + + R Y +G +VV R+P DP +V+ RL G + +W R R +PEG+CWV G S DS +GPIPLALIE +V++++WPP RM Sbjct: 12 ASLFAVPVALAFHDVIGSPVQVEGRSMQPAINPHLGPESQQGESLDVVWQDKRSISRHIYERGSIVVFRNPFDPKERVVKRLIGVDGDWVRPRGNKHNLMRVPEGYCWVEGDNHGVSGDSNHFGPIPLALIEAKVTHVLWPPGRM 156
BLAST of NO20G01810 vs. NCBI_GenBank
Match: XP_008871471.1 (signal peptidase I [Aphanomyces invadans] >ETV99695.1 signal peptidase I [Aphanomyces invadans]) HSP 1 Score: 113.2 bits (282), Expect = 7.300e-22 Identity = 63/153 (41.18%), Postives = 87/153 (56.86%), Query Frame = 0 Query: 12 WRRFVS-TLGLLPVAITIHDMVGSIMLVDGSSMQPTLSRDSEGSPNDSRDLILVAKWPTKVWRQYRKGDMVVIRSPLDPNSKVITRLTGTEREWRTRREGFRREPIPEGFCWVTG-----SEDSETYGPIPLALIEGRVSYIVWPPSRMGPVP 159 W R TLG LPV + + +V S V+G SMQPTL+R+ S D++L+ K+ ++ + +GD+VV++SP +P + RL E +W R G RR +P G CWV G SEDS +G +P+ALIE RV IVWPP VP Sbjct: 7 WARTAQLTLGWLPVGVAFNSLVLSWGRVEGKSMQPTLNREDAA----SGDVVLLDKFSVQILHRLVRGDVVVLKSPTNPGENLTKRLIALEGDWVEGRYG-RRVVVPPGKCWVEGDNEDVSEDSNEFGTVPMALIESRVVAIVWPPKHFSIVP 154
BLAST of NO20G01810 vs. NCBI_GenBank
Match: XP_009839812.1 (signal peptidase I [Aphanomyces astaci] >ETV70748.1 signal peptidase I [Aphanomyces astaci]) HSP 1 Score: 110.5 bits (275), Expect = 4.700e-21 Identity = 63/153 (41.18%), Postives = 87/153 (56.86%), Query Frame = 0 Query: 12 WRRFVS-TLGLLPVAITIHDMVGSIMLVDGSSMQPTLSRDSEGSPNDSRDLILVAKWPTKVWRQYRKGDMVVIRSPLDPNSKVITRLTGTEREWRTRREGFRREPIPEGFCWVTG-----SEDSETYGPIPLALIEGRVSYIVWPPSRMGPVP 159 W R TLG LPVAI + + S V G SMQPTL+RD + D +L+ K+ ++ + +GD+VV++SP DP + RL E +W R G +R +P G CWV G SEDS +G +P+ALIE RV I+WPPS + +P Sbjct: 7 WLRVTQLTLGWLPVAIAFNAVGLSWGRVQGKSMQPTLNRDY--ATTTKGDTVLLDKFSVQMLHRLVRGDVVVLKSPTDPGELLTKRLIALEGDWVEGRNG-KRVVVPPGKCWVEGDNEDVSEDSNEFGSVPMALIEARVVAILWPPSHVAKIP 156
BLAST of NO20G01810 vs. NCBI_GenBank
Match: ORY00765.1 (mitochondrial inner membrane peptidase complex catalytic subunit 2 [Basidiobolus meristosporus CBS 931.73]) HSP 1 Score: 110.5 bits (275), Expect = 4.700e-21 Identity = 63/145 (43.45%), Postives = 81/145 (55.86%), Query Frame = 0 Query: 23 PVAITIHDMVGSIMLVDGSSMQPTLSRDSEGSPNDSRDLILVAKWPTKVWRQYRKGDMVVIRSPLDPNSKVITRLTGTEREW-RT--RREGFRREPIPEGFCWVTGSE-----DSETYGPIPLALIEGRVSYIVWPPSRMGPVPK 160 PV+I D + S+ V G SMQPT + D+ RD +++ KW R Y GD+V ++SP+DPN VI R+ E + RT E IP G+CWV G E DS YGP+PL LI +VS IVWPPSR G VP+ Sbjct: 16 PVSIFFLDHICSVATVSGRSMQPTFNPDTNLL---KRDKVILNKWSAS-RRNYSTGDVVALKSPIDPNRTVIKRIIAVEGDLVRTFPPNEDSSLVRIPRGYCWVEGDEPMHSRDSNVYGPVPLGLITAKVSTIVWPPSRFGSVPR 156
BLAST of NO20G01810 vs. NCBI_GenBank
Match: XP_024384761.1 (mitochondrial inner membrane protease subunit 2-like [Physcomitrella patens] >PNR48726.1 hypothetical protein PHYPA_013203 [Physcomitrella patens]) HSP 1 Score: 110.5 bits (275), Expect = 4.700e-21 Identity = 57/141 (40.43%), Postives = 88/141 (62.41%), Query Frame = 0 Query: 24 VAITIHDMVGSIMLVDGSSMQPTLSRDSEGSPND--SRDLILVAKWPTKVWRQYRKGDMVVIRSPLDPNSKVITRLTGTEREWRTRREGFRREPIPEGFCWVTG-----SEDSETYGPIPLALIEGRVSYIVWPPSRMGPV 158 V IT+ D +GS+ + G SMQPTL+ +E P + DL+ + K + + + +GD+VV RSPL+P ++ RL + +W T + +P+G CWV G S DS+++GPIPL L++G+V+++VWPPSR GPV Sbjct: 22 VGITLSDRIGSVATMHGRSMQPTLN-PAEDDPWGYLNADLLFLEKLSLRTY-NFSRGDVVVFRSPLEPKMWLVKRLIALQGDWVTVPGTYDILQVPKGHCWVEGDNAEISLDSKSFGPIPLGLMKGKVTHVVWPPSRFGPV 160
BLAST of NO20G01810 vs. NCBI_GenBank
Match: XP_020181861.1 (mitochondrial inner membrane protease subunit 2-like [Aegilops tauschii subsp. tauschii]) HSP 1 Score: 110.2 bits (274), Expect = 6.200e-21 Identity = 58/141 (41.13%), Postives = 82/141 (58.16%), Query Frame = 0 Query: 24 VAITIHDMVGSIMLVDGSSMQPTLSRDSEGSPNDSRDLILVAKWPTKVWRQYRKGDMVVIRSPLDPNSKVITRLTGTEREWRTRREGFRREPIPEGFCWVTG-----SEDSETYGPIPLALIEGRVSYIVWPPSRMGPVPK 160 + IT+ D S+ V G SM+PTL +G+ D R+ +V + P Y +G++VV SP D S+ I RL G +W + + IPEG CWV G S DS +YGP+PL L++GRV+++VWPPS+MG V K Sbjct: 19 IGITVSDRYFSVAAVHGGSMRPTL----DGTTADGREYAVVKRSPL---YDYSRGEVVVFVSPADHRSRTIKRLIGLPGDWISVPDKEEIRQIPEGHCWVEGDNGSASWDSRSYGPVPLGLVQGRVTHVVWPPSKMGRVDK 152 The following BLAST results are available for this feature:
BLAST of NO20G01810 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO20G01810 ID=NO20G01810|Name=NO20G01810|organism=Nannochloropsis oceanica|type=gene|length=674bpback to top protein sequence of NO20G01810.1 >NO20G01810.1-protein ID=NO20G01810.1-protein|Name=NO20G01810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=160bpback to top Synonyms
Publications
|