NO20G01810, NO20G01810 (gene) Nannochloropsis oceanica

Overview
NameNO20G01810
Unique NameNO20G01810
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length674
Alignment locationchr20:543490..544163 +

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Properties
Property NameValue
DescriptionPeptidase S24/S26A/S26B/S26C, beta-ribbon domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:543490..544163 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008236serine-type peptidase activity
GO:0016787hydrolase activity
Vocabulary: Cellular Component
TermDefinition
GO:0042720mitochondrial inner membrane peptidase complex
GO:0016020membrane
GO:0005739mitochondrion
Vocabulary: Biological Process
TermDefinition
GO:0006465signal peptide processing
GO:0006627protein processing involved in protein targeting to mitochondrion
GO:0019538protein metabolic process
GO:0016043cellular component organization
GO:0006810transport
Vocabulary: INTERPRO
TermDefinition
IPR036286LexA/Signal_pep-like_sf
IPR037730IMP2
Homology
BLAST of NO20G01810 vs. NCBI_GenBank
Match: EWM22040.1 (Peptidase S24/S26A/S26B/S26C, beta-ribbon domain protein [Nannochloropsis gaditana])

HSP 1 Score: 225.7 bits (574), Expect = 1.000e-55
Identity = 105/160 (65.62%), Postives = 127/160 (79.38%), Query Frame = 0
Query:    5 AWFSSGGWRRFVSTLGLLPVAITIHDMVGSIMLVDGSSMQPTLSRDSEGSPNDSRDLILVAKWPTKVWRQYRKGDMVVIRSPLDPNSKVITRLTGTEREWRTRREGFRREPIPEGFCWVTG-----SEDSETYGPIPLALIEGRVSYIVWPPSRMGPVPK 160
            A+ SSG  RR +STL  LPV + +++++GS M VDG SM PTL+    GS   SRDL+ VAKWP KVWR+YRKGD+VV+RSP+DP+ +VI RLTG EREWRTRR G R+EPIPEGFCWVTG     SEDSETYGP+PLALIEG V+Y+VWP +R+GPVPK
Sbjct:    9 AFASSGNVRRLLSTLSFLPVGVAVNELIGSFMFVDGRSMHPTLNPAYSGSYTSSRDLVFVAKWPIKVWRRYRKGDVVVLRSPVDPDVEVIRRLTGREREWRTRRVGMRQEPIPEGFCWVTGDNPLYSEDSETYGPVPLALIEGWVAYVVWPLNRVGPVPK 168          
BLAST of NO20G01810 vs. NCBI_GenBank
Match: XP_005649773.1 (LexA/Signal peptidase [Coccomyxa subellipsoidea C-169] >EIE25229.1 LexA/Signal peptidase [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 122.5 bits (306), Expect = 1.200e-24
Identity = 68/152 (44.74%), Postives = 89/152 (58.55%), Query Frame = 0
Query:   12 WRRFVSTLGLLPVAITIHDMVGSIMLVDGSSMQPTLSRDSEGSPNDSRDLILVAKWPTKVWRQYRKGDMVVIRSPLDPNSKVITRLTGTEREWRTRREGFRREPIPEGFCWVTG-----SEDSET-YGPIPLALIEGRVSYIVWPPSRMGPV 158
            WR    T  L+PV I + D++     V G SMQPTL+ +S        DL+L  KW  K++R Y +GD+V++RSP DP+  +I RL   E +W T         IP+G CWV G     S DS + +GP+P+ALIEGRV YI WPPSR G V
Sbjct:    6 WR----TAKLVPVVIAVEDLLYGPAYVSGRSMQPTLNPESA----TGHDLVLADKWSIKLYR-YNRGDVVLLRSPEDPDMTLIKRLLALEGDWVTIPGSLELAKIPKGHCWVEGDNPEFSADSRSKFGPVPVALIEGRVQYIFWPPSRAGRV 148          
BLAST of NO20G01810 vs. NCBI_GenBank
Match: OAE18524.1 (hypothetical protein AXG93_625s1130 [Marchantia polymorpha subsp. ruderalis] >PTQ38130.1 hypothetical protein MARPO_0053s0064 [Marchantia polymorpha])

HSP 1 Score: 117.5 bits (293), Expect = 3.900e-23
Identity = 59/151 (39.07%), Postives = 93/151 (61.59%), Query Frame = 0
Query:   13 RRFVSTLGL-LPVAITIHDMVGSIMLVDGSSMQPTLSRDSEGSPNDSRDLILVAKWPTKVWRQYRKGDMVVIRSPLDPNSKVITRLTGTEREWRTRREGFRREPIPEGFCWVTG-----SEDSETYGPIPLALIEGRVSYIVWPPSRMGPV 158
            RRF+    + +   IT+ D  GS++ ++G SMQPT + +   SP  S+D+++V K+  + +  + +GD+V  RSP DP   ++ RL   + +W T    +    IP+G CWV G     S DS+ +GPIP+AL+ GRV+++VWPP R+GPV
Sbjct:   12 RRFLKGAAVGVAAGITVADRFGSVVRLNGRSMQPTFNPEDSDSP--SKDIVVVEKFCLRNF-SFTRGDVVAFRSPQDPKEYLVKRLIALQEDWITVPGTYEILQIPKGHCWVEGDNVDVSLDSKEFGPIPIALMRGRVTHVVWPPQRLGPV 159          
BLAST of NO20G01810 vs. NCBI_GenBank
Match: EUC57835.1 (inner membrane protease subunit 2 [Rhizoctonia solani AG-3 Rhs1AP] >KEP54731.1 inner membrane protease subunit 2 [Rhizoctonia solani 123E])

HSP 1 Score: 115.5 bits (288), Expect = 1.500e-22
Identity = 57/156 (36.54%), Postives = 90/156 (57.69%), Query Frame = 0
Query:   11 GWRRFVSTLGLLPVAITIHDMVGSIMLVDGSSMQPTLSRDSEGSPNDSRDLILVAKWPTKVWRQYRKGDMVVIRSPLDPNSKVITRLTGTEREWRTRREGF--RREPIPEGFCWVTGSE-----DSETYGPIPLALIEGRVSYIVWPPSRMGPVPK 160
            G R  +  L ++P  +T   +VG+I +V GSSMQP L+ +        RD++LV +W      +YR+GD+V +RSPLDPN  ++ R+     +       +  +   +P+G+ WV G E     DS  +GP+PL LIE R++ ++WP  R+GPVP+
Sbjct:    3 GRRELLRLLWIIPPTLTFTSLVGTINVVSGSSMQPALNPEGP----YQRDIVLVDRWSIVARHRYRRGDVVSLRSPLDPNLIIVKRILALGGDMLETLPPYPDKEVRVPDGYAWVEGDEPFRSRDSNHFGPVPLGLIESRIALVLWPFKRLGPVPQ 154          
BLAST of NO20G01810 vs. NCBI_GenBank
Match: CBJ32256.1 (Imp2 homolog, Inner Membrane Peptidase complex subunit 2 [Ectocarpus siliculosus])

HSP 1 Score: 113.2 bits (282), Expect = 7.300e-22
Identity = 57/145 (39.31%), Postives = 85/145 (58.62%), Query Frame = 0
Query:   17 STLGLLPVAITIHDMVGSIMLVDGSSMQPTLSRDSEGSPNDSRDLILVAKWPTKVWRQ-YRKGDMVVIRSPLDPNSKVITRLTGTEREW-RTRREGFRREPIPEGFCWVTG-----SEDSETYGPIPLALIEGRVSYIVWPPSRM 155
            ++L  +PVA+  HD++GS + V+G SMQP ++            L +V +    + R  Y +G +VV R+P DP  +V+ RL G + +W R R        +PEG+CWV G     S DS  +GPIPLALIE +V++++WPP RM
Sbjct:   12 ASLFAVPVALAFHDVIGSPVQVEGRSMQPAINPHLGPESQQGESLDVVWQDKRSISRHIYERGSIVVFRNPFDPKERVVKRLIGVDGDWVRPRGNKHNLMRVPEGYCWVEGDNHGVSGDSNHFGPIPLALIEAKVTHVLWPPGRM 156          
BLAST of NO20G01810 vs. NCBI_GenBank
Match: XP_008871471.1 (signal peptidase I [Aphanomyces invadans] >ETV99695.1 signal peptidase I [Aphanomyces invadans])

HSP 1 Score: 113.2 bits (282), Expect = 7.300e-22
Identity = 63/153 (41.18%), Postives = 87/153 (56.86%), Query Frame = 0
Query:   12 WRRFVS-TLGLLPVAITIHDMVGSIMLVDGSSMQPTLSRDSEGSPNDSRDLILVAKWPTKVWRQYRKGDMVVIRSPLDPNSKVITRLTGTEREWRTRREGFRREPIPEGFCWVTG-----SEDSETYGPIPLALIEGRVSYIVWPPSRMGPVP 159
            W R    TLG LPV +  + +V S   V+G SMQPTL+R+       S D++L+ K+  ++  +  +GD+VV++SP +P   +  RL   E +W   R G RR  +P G CWV G     SEDS  +G +P+ALIE RV  IVWPP     VP
Sbjct:    7 WARTAQLTLGWLPVGVAFNSLVLSWGRVEGKSMQPTLNREDAA----SGDVVLLDKFSVQILHRLVRGDVVVLKSPTNPGENLTKRLIALEGDWVEGRYG-RRVVVPPGKCWVEGDNEDVSEDSNEFGTVPMALIESRVVAIVWPPKHFSIVP 154          
BLAST of NO20G01810 vs. NCBI_GenBank
Match: XP_009839812.1 (signal peptidase I [Aphanomyces astaci] >ETV70748.1 signal peptidase I [Aphanomyces astaci])

HSP 1 Score: 110.5 bits (275), Expect = 4.700e-21
Identity = 63/153 (41.18%), Postives = 87/153 (56.86%), Query Frame = 0
Query:   12 WRRFVS-TLGLLPVAITIHDMVGSIMLVDGSSMQPTLSRDSEGSPNDSRDLILVAKWPTKVWRQYRKGDMVVIRSPLDPNSKVITRLTGTEREWRTRREGFRREPIPEGFCWVTG-----SEDSETYGPIPLALIEGRVSYIVWPPSRMGPVP 159
            W R    TLG LPVAI  + +  S   V G SMQPTL+RD   +     D +L+ K+  ++  +  +GD+VV++SP DP   +  RL   E +W   R G +R  +P G CWV G     SEDS  +G +P+ALIE RV  I+WPPS +  +P
Sbjct:    7 WLRVTQLTLGWLPVAIAFNAVGLSWGRVQGKSMQPTLNRDY--ATTTKGDTVLLDKFSVQMLHRLVRGDVVVLKSPTDPGELLTKRLIALEGDWVEGRNG-KRVVVPPGKCWVEGDNEDVSEDSNEFGSVPMALIEARVVAILWPPSHVAKIP 156          
BLAST of NO20G01810 vs. NCBI_GenBank
Match: ORY00765.1 (mitochondrial inner membrane peptidase complex catalytic subunit 2 [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 110.5 bits (275), Expect = 4.700e-21
Identity = 63/145 (43.45%), Postives = 81/145 (55.86%), Query Frame = 0
Query:   23 PVAITIHDMVGSIMLVDGSSMQPTLSRDSEGSPNDSRDLILVAKWPTKVWRQYRKGDMVVIRSPLDPNSKVITRLTGTEREW-RT--RREGFRREPIPEGFCWVTGSE-----DSETYGPIPLALIEGRVSYIVWPPSRMGPVPK 160
            PV+I   D + S+  V G SMQPT + D+       RD +++ KW     R Y  GD+V ++SP+DPN  VI R+   E +  RT    E      IP G+CWV G E     DS  YGP+PL LI  +VS IVWPPSR G VP+
Sbjct:   16 PVSIFFLDHICSVATVSGRSMQPTFNPDTNLL---KRDKVILNKWSAS-RRNYSTGDVVALKSPIDPNRTVIKRIIAVEGDLVRTFPPNEDSSLVRIPRGYCWVEGDEPMHSRDSNVYGPVPLGLITAKVSTIVWPPSRFGSVPR 156          
BLAST of NO20G01810 vs. NCBI_GenBank
Match: XP_024384761.1 (mitochondrial inner membrane protease subunit 2-like [Physcomitrella patens] >PNR48726.1 hypothetical protein PHYPA_013203 [Physcomitrella patens])

HSP 1 Score: 110.5 bits (275), Expect = 4.700e-21
Identity = 57/141 (40.43%), Postives = 88/141 (62.41%), Query Frame = 0
Query:   24 VAITIHDMVGSIMLVDGSSMQPTLSRDSEGSPND--SRDLILVAKWPTKVWRQYRKGDMVVIRSPLDPNSKVITRLTGTEREWRTRREGFRREPIPEGFCWVTG-----SEDSETYGPIPLALIEGRVSYIVWPPSRMGPV 158
            V IT+ D +GS+  + G SMQPTL+  +E  P    + DL+ + K   + +  + +GD+VV RSPL+P   ++ RL   + +W T    +    +P+G CWV G     S DS+++GPIPL L++G+V+++VWPPSR GPV
Sbjct:   22 VGITLSDRIGSVATMHGRSMQPTLN-PAEDDPWGYLNADLLFLEKLSLRTY-NFSRGDVVVFRSPLEPKMWLVKRLIALQGDWVTVPGTYDILQVPKGHCWVEGDNAEISLDSKSFGPIPLGLMKGKVTHVVWPPSRFGPV 160          
BLAST of NO20G01810 vs. NCBI_GenBank
Match: XP_020181861.1 (mitochondrial inner membrane protease subunit 2-like [Aegilops tauschii subsp. tauschii])

HSP 1 Score: 110.2 bits (274), Expect = 6.200e-21
Identity = 58/141 (41.13%), Postives = 82/141 (58.16%), Query Frame = 0
Query:   24 VAITIHDMVGSIMLVDGSSMQPTLSRDSEGSPNDSRDLILVAKWPTKVWRQYRKGDMVVIRSPLDPNSKVITRLTGTEREWRTRREGFRREPIPEGFCWVTG-----SEDSETYGPIPLALIEGRVSYIVWPPSRMGPVPK 160
            + IT+ D   S+  V G SM+PTL    +G+  D R+  +V + P      Y +G++VV  SP D  S+ I RL G   +W +  +      IPEG CWV G     S DS +YGP+PL L++GRV+++VWPPS+MG V K
Sbjct:   19 IGITVSDRYFSVAAVHGGSMRPTL----DGTTADGREYAVVKRSPL---YDYSRGEVVVFVSPADHRSRTIKRLIGLPGDWISVPDKEEIRQIPEGHCWVEGDNGSASWDSRSYGPVPLGLVQGRVTHVVWPPSKMGRVDK 152          
The following BLAST results are available for this feature:
BLAST of NO20G01810 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22040.11.000e-5565.63Peptidase S24/S26A/S26B/S26C, beta-ribbon domain p... [more]
XP_005649773.11.200e-2444.74LexA/Signal peptidase [Coccomyxa subellipsoidea C-... [more]
OAE18524.13.900e-2339.07hypothetical protein AXG93_625s1130 [Marchantia po... [more]
EUC57835.11.500e-2236.54inner membrane protease subunit 2 [Rhizoctonia sol... [more]
CBJ32256.17.300e-2239.31Imp2 homolog, Inner Membrane Peptidase complex sub... [more]
XP_008871471.17.300e-2241.18signal peptidase I [Aphanomyces invadans] >ETV9969... [more]
XP_009839812.14.700e-2141.18signal peptidase I [Aphanomyces astaci] >ETV70748.... [more]
ORY00765.14.700e-2143.45mitochondrial inner membrane peptidase complex cat... [more]
XP_024384761.14.700e-2140.43mitochondrial inner membrane protease subunit 2-li... [more]
XP_020181861.16.200e-2141.13mitochondrial inner membrane protease subunit 2-li... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002720NSK002720Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G01810.1NO20G01810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100052g10gene8381Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G01810.1NO20G01810.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G01810 ID=NO20G01810|Name=NO20G01810|organism=Nannochloropsis oceanica|type=gene|length=674bp
CAGGGCAATCATCAAGCCGCGGCCAGTCCGTCTTAGTTCGCCCGGGCTTA
CCGACTAACCACAGCCTTCTCAAGCAACGCTTCAACCCACATGACGGCCG
GCGCATGGTTTTCGTCTGGGGGATGGCGCCGGTTCGTTTCCACCCTTGGT
CTCCTCCCCGTGGCAATCACAATTCACGATATGGTAGGATCAATCATGTT
AGTGGACGGTAGCTCCATGCAGCCGACCCTTAGCCGAGACAGTGAAGGAA
GTCCAAATGACTCAAGGGATTTGATACTGGTGGCAAAGTGGCCGACCAAG
GTATGGCGGCAGTACCGCAAGGGAGACATGGTGGTAATTCGGAGCCCGCT
TGATCCAAATAGCAAGGTGATCACGCGGCTGACGGGGACTGAGCGGGAAT
GGCGAACACGCCGTGAAGGGTTTCGAAGAGAGCCGATACCTGAAGGCTTT
TGCTGGGTAACGGGTTCGGAGGATTCAGAAACATACGGTCCCATTCCCCT
GGCTCTTATAGAAGGCCGCGTCAGTTACATCGTTTGGCCACCGTCTCGTA
TGGGTCCCGTGCCCAAGTAATCTCCCGGTACGAGTCCCGTCTGAGGAGAT
GTGAGGGGGTGATGTACAGAAAAGAAACAAGGAAGCGATGTGCCTGGTTG
CTCACATGAAGAGGGCCAAACGGA
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protein sequence of NO20G01810.1

>NO20G01810.1-protein ID=NO20G01810.1-protein|Name=NO20G01810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=160bp
MTAGAWFSSGGWRRFVSTLGLLPVAITIHDMVGSIMLVDGSSMQPTLSRD
SEGSPNDSRDLILVAKWPTKVWRQYRKGDMVVIRSPLDPNSKVITRLTGT
EREWRTRREGFRREPIPEGFCWVTGSEDSETYGPIPLALIEGRVSYIVWP
PSRMGPVPK*
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Synonyms
Publications