NO20G01800, NO20G01800 (gene) Nannochloropsis oceanica

Overview
NameNO20G01800
Unique NameNO20G01800
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2167
Alignment locationchr20:541136..543302 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:541136..543302 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO20G01800 vs. NCBI_GenBank
Match: EWM22039.1 (hypothetical protein Naga_100052g9 [Nannochloropsis gaditana])

HSP 1 Score: 476.5 bits (1225), Expect = 9.600e-131
Identity = 238/378 (62.96%), Postives = 277/378 (73.28%), Query Frame = 0 
Query:   90 APSMS-LPGAQQARNFEVRLPWDKRREAREKAEFDVIMRLEETLKALDGRMVLPPDSTFRKWLEKHGKDTETAEPKKEDFQRWLKAAETELAAQSKGQMGVFSRGEWWTEGHGDFQEAIRALYALQLQQLCAELRKSKAVFTPHLPGDRLVKGAMAKAVGVLQAHMDGDFETRLKGTRCRSAGWVVIDDVISAWRLEFLLSLSNLTFLLPSPIAASWTLQDDSPEAKGWLSEQGVEDAVYTVLNPIVATAAVIYPAIPAVKKAHKKAFAKYIKLYLRDQADVPTKIRCTFHWTDPPLESLPTQPPPVPVPKVIDLPGYLATQKENFPDLHLVGAGSMALYRRVREAHYLQKKEDRTTFRTGLIYLVFLGVADAIVSGL 467
            AP  S L   QQ R+F V LPWDKRREAREKAE D I + E  +KALDG +VLPPDS+F KWLE +GKD E A PKKE+FQ+WL AAE+EL  Q+K Q+G+FS GEWW  GH D  +AIR+L++LQLQ LCAEL+KSKAVFTPH+PGD L KG MAK V VLQAH+DGD ETRLK                                       A+W LQDDS E+KGWLSEQG+EDAV+TVLNP++ATAA +YP++P V KA KKAF K+IK Y RD  D+P+K+RC FHWT+PPLESLPT+PP VPVPKVIDLPGYL TQ+ENFPD+H VG GSM LYRRVREA+Y QKKEDR TFRTG +YL+ LG AD  VSGL
Sbjct:   60 APGRSFLSSEQQIRDFHVPLPWDKRREAREKAELDCITKAEGVMKALDGSLVLPPDSSFYKWLEHNGKDVEGAMPKKEEFQKWLSAAESELNTQTKAQVGIFSGGEWWRAGHDDHLQAIRSLHSLQLQHLCAELKKSKAVFTPHIPGDYLGKGTMAKVVAVLQAHLDGDLETRLK---------------------------------------AAWMLQDDSTESKGWLSEQGMEDAVHTVLNPVIATAATLYPSLPGVNKAQKKAFVKFIKSYTRDHTDLPSKLRCVFHWTEPPLESLPTKPPAVPVPKVIDLPGYLKTQEENFPDMHQVGKGSMELYRRVREAYYHQKKEDRDTFRTGAVYLIALGFADVYVSGL 398
The following BLAST results are available for this feature:
BLAST of NO20G01800 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22039.19.600e-13162.96hypothetical protein Naga_100052g9 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002719NSK002719Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G01800.1NO20G01800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO20G01800.2NO20G01800.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO20G01800.3NO20G01800.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|671980gene_6399Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100052g9gene8380Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G01800.1NO20G01800.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO20G01800.2NO20G01800.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO20G01800.3NO20G01800.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G01800 ID=NO20G01800|Name=NO20G01800|organism=Nannochloropsis oceanica|type=gene|length=2167bp
GAAGAAGCGCATGATGCCTGTCTGCGTTAATAGGAAGGGCATTTGGTGGG
CCAGACATGATTCACCCAAAAGTAAAGTGATGGACACATATAAGATGCTA
TGATCTTTGCGCGTGGTTGTGGGACTCAAAGGATGGCCTAAAATATGTGT
TTGACGCTGCATTTGCCCCATCAGGATCGTCGACTCTTCAGTTGGGGAGG
TCGCTGTGAGCGAGTGATACCTTGAGCGTTCGATGGCGGTGCCCACACTG
TTACCAATGACTAGACACGGCCGTGGGACACCATGGGACACATACAAACC
ATTCGCTGCGTTGCCTTGTCTGCCACGTGATGTCTCAATCATCCCATCGC
ACCCAGATTAGCTTATATATCACGGGAGGACGAAGCAGGCTGCCATCCAG
CTCCCATCATCACCCTACCATGGTCCGGCGGCTCGTGGCCAGCGTCCTGG
TTTCTCCATCGACCGCTGCAGCCCGAATATTGTCGTCGTCATCCTCGTCA
TCCTCGTCCTCAGCATGCCAGCGGGTTCTTCAGACCAACGCAGGAATCAG
TGGTAGCATCACTACGAGCACCAGCACTAGCCACCGGCGGCGGAGGGCGC
CTTCGATGTCCCTGCCCGGTGCCCAGCAGGCGCGAAATTTTGAAGTACGC
TTGCCATGGGACAAACGGAGAGgtacggtgaagggaactacagtgccggg
attgtgacataattcctctgtttgagtcacccatgaacaattatcattcc
acacctcacacgtatacaaagAGGCCCGTGAAAAGGCGGAGTTCGACGTG
ATTATGCGGTTAGAGGAAACACTCAAGGCTCTTGATGGACGCATGGTTTT
GCCACCAGgtaaggcatggatctttggagaaaatggtaaagaaggaaaga
aaggatgaccacgaaaagggaggctcattttttgtaccgcatttctctta
ccacaacccaccattacagATTCAACATTCCGTAAGTGGCTAGAAAAACA
CGGTAAGGACACAGAAACAGCCGAACCGAAGAAGGAAGACTTTCAACGCT
GGTTGAAGGCGGCGGAGACGGAGCTGGCCGCGCAGAGCAAGGGACAAATG
GGTGTCTTCTCACGGGGCGAGTGGTGGACCGAAGGGCATGGAGACTTCCA
AGAAGCGATCCGAGCGCTGTATGCCCTTCAATTGCAGCAGCTGTGTGCAG
AGCTGCGTAAGAGTAAGGCGGTTTTTACACCTCATCTTCCCGgtaggttt
gtgtgtgtggataataggaatgcaaatcatgtagggagagaattcgacat
cgaccttgcgactttctgtccactcatgaatgaagtatcttgcatgaatg
ctctagGCGATCGGCTGGTGAAGGGGGCCATGGCCAAGGCGGTCGGAGTG
CTCCAAGCACACATGGACGGCGATTTTGAGACGCGATTGAAAGGTACACG
TTGCCGCTCGGCTGGGTGGGTTGTGATAGATGATGTGATATCTGCCTGGC
GTCTTGAGTTCCTCCTATCGCTCAGTAATTTAACTTTCCTCCTTCCATCC
CCCATTGCAGCCTCCTGGACGCTGCAAGATGACAGCCCGGAGGCAAAAGG
CTGGCTGTCCGAACAAGGCGTGGAAGACGCCGTCTATACTGTCCTTAACC
CCATCGTCGCCACTGCCGCCGTTATCTACCCCGCCATCCCCGCTGTAAAA
AAGGCCCACAAAAAGGCGTTCGCGAAGTACATCAAGCTCTACTTGCGGGA
CCAGGCCGACGTCCCCACGAAGATTCGGTGCACTTTCCACTGGACGGATC
CACCCCTCGAGAGCCTCCCAACCCAGCCCCCGCCCGTGCCTGTCCCCAAA
GTCATCGACCTGCCTGGTTACCTCGCAACGCAGAAAGAAAACTTTCCCGA
CCTGCACCTGGTGGGAGCGGGCTCCATGGCGTTGTATCGGCGGGTGAGGG
AGGCACACTACCTCCAGAAGAAGGAGGATCGCACCACATTTAGGACTGGC
CTGATTTACCTTGTCTTCCTGGGTGTGGCTGATGCTATTGTAAGTGGGCT
ATGACGGGGACAAAAAGACACGGTGTCCTAGATGGTCACCGCGATGAACG
TTGGTGGAAAGGGGAATTAGACCACTTCAAAACAAAATGAATTTAAATGT
AATCGAGCTGAGCGTGA
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protein sequence of NO20G01800.1

>NO20G01800.1-protein ID=NO20G01800.1-protein|Name=NO20G01800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=428bp
MSQSSHRTQISLYITGGRSRLPSSSHHHPTMVRRLVASVLVSPSTAAARI
LSSSSSSSSSSACQRVLQTNAGISGSITTSTSTSHRRRRAPSMSLPGAQQ
ARNFEVRLPWDKRREAREKAEFDVIMRLEETLKALDGRMVLPPDSTFRKW
LEKHGKDTETAEPKKEDFQRWLKAAETELAAQSKGQMGVFSRGEWWTEGH
GDFQEAIRALYALQLQQLCAELRKSKAVFTPHLPGDRLVKGAMAKAVGVL
QAHMDGDFETRLKASWTLQDDSPEAKGWLSEQGVEDAVYTVLNPIVATAA
VIYPAIPAVKKAHKKAFAKYIKLYLRDQADVPTKIRCTFHWTDPPLESLP
TQPPPVPVPKVIDLPGYLATQKENFPDLHLVGAGSMALYRRVREAHYLQK
KEDRTTFRTGLIYLVFLGVADAIVSGL*
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protein sequence of NO20G01800.2

>NO20G01800.2-protein ID=NO20G01800.2-protein|Name=NO20G01800.2|organism=Nannochloropsis oceanica|type=polypeptide|length=303bp
MRLEETLKALDGRMVLPPDSTFRKWLEKHGKDTETAEPKKEDFQRWLKAA
ETELAAQSKGQMGVFSRGEWWTEGHGDFQEAIRALYALQLQQLCAELRKS
KAVFTPHLPGDRLVKGAMAKAVGVLQAHMDGDFETRLKASWTLQDDSPEA
KGWLSEQGVEDAVYTVLNPIVATAAVIYPAIPAVKKAHKKAFAKYIKLYL
RDQADVPTKIRCTFHWTDPPLESLPTQPPPVPVPKVIDLPGYLATQKENF
PDLHLVGAGSMALYRRVREAHYLQKKEDRTTFRTGLIYLVFLGVADAIVS
GL*
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protein sequence of NO20G01800.3

>NO20G01800.3-protein ID=NO20G01800.3-protein|Name=NO20G01800.3|organism=Nannochloropsis oceanica|type=polypeptide|length=467bp
MSQSSHRTQISLYITGGRSRLPSSSHHHPTMVRRLVASVLVSPSTAAARI
LSSSSSSSSSSACQRVLQTNAGISGSITTSTSTSHRRRRAPSMSLPGAQQ
ARNFEVRLPWDKRREAREKAEFDVIMRLEETLKALDGRMVLPPDSTFRKW
LEKHGKDTETAEPKKEDFQRWLKAAETELAAQSKGQMGVFSRGEWWTEGH
GDFQEAIRALYALQLQQLCAELRKSKAVFTPHLPGDRLVKGAMAKAVGVL
QAHMDGDFETRLKGTRCRSAGWVVIDDVISAWRLEFLLSLSNLTFLLPSP
IAASWTLQDDSPEAKGWLSEQGVEDAVYTVLNPIVATAAVIYPAIPAVKK
AHKKAFAKYIKLYLRDQADVPTKIRCTFHWTDPPLESLPTQPPPVPVPKV
IDLPGYLATQKENFPDLHLVGAGSMALYRRVREAHYLQKKEDRTTFRTGL
IYLVFLGVADAIVSGL*
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Synonyms
Publications