NO20G01760, NO20G01760 (gene) Nannochloropsis oceanica

Overview
NameNO20G01760
Unique NameNO20G01760
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2558
Alignment locationchr20:531600..534157 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:531600..534157 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR002781TM_pro_TauE-like
Homology
[Close]
BLAST of NO20G01760 vs. NCBI_GenBank
Match: EWM22034.1 (Protein of unknown function DUF81 [Nannochloropsis gaditana])

HSP 1 Score: 333.2 bits (853), Expect = 9.100e-88
Identity = 183/288 (63.54%), Postives = 223/288 (77.43%), Query Frame = 0 
Query:    1 MAVQSALIWRDVNWELVRLLVTPIVVGTGLGLVALYHIHSLWLKQVLGIIFLSVGCYQIQGEVMRAKGLIAEGGSGERRGQLVVKGSDKEGLRQMGRVLGLASGVLAGLFGTGGPPLMVLVAVTDVGKDEWRASNAVIWLVDNVVRFAYLYAVQRQMALLNDGPSLVSLMIAGGVGVYAGSVLSPMVDGALFRRLLILLMLLGANVMLFAGTPGGVALSGVLSIFSLLILYILALWHQPLLLAKGGNNLAPAGVGMEEEA-GSHRPQRWLGNAGYNQVATREQEEDGE 288
            MAVQSALIWR+VNW+LVRLL+ PI+ GTGLGLVALYH+HSLWLK+VLG++FLSVG YQI  EV+RAKGL   GG   ++GQ++V+G ++ GLR++GRVLGLASG LAGLFGTGG PLM+LVA T V KDEWRASNAVIWLVDNV R  YL AVQRQ++L +D   L+ LM+AGG+GV AGS LS  VD ALFRRLLILLMLLGANVMLFAG P   A+ GV ++    +LY+LALW QP       + LA AG+  +  +     PQRW+G +GY++VAT+ +EE  E
Sbjct:   68 MAVQSALIWREVNWQLVRLLLWPILFGTGLGLVALYHVHSLWLKRVLGLVFLSVGAYQIPAEVLRAKGL--SGGHDGKQGQVLVEGEERAGLRRLGRVLGLASGFLAGLFGTGGAPLMILVAATGVEKDEWRASNAVIWLVDNVFRLLYLQAVQRQISLPDDASRLLLLMLAGGLGVGAGSALSSFVDVALFRRLLILLMLLGANVMLFAGRPLRTAVVGVCAVSLFFLLYLLALWRQPSGPGPWASLLAAAGLAAKSSSVEDWVPQRWVGKSGYSRVATQAEEEREE 353
The following BLAST results are available for this feature:
BLAST of NO20G01760 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22034.19.100e-8863.54Protein of unknown function DUF81 [Nannochloropsis... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002713NSK002713Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G01760.2NO20G01760.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO20G01760.1NO20G01760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594868gene_6395Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100052g3gene8375Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G01760.2NO20G01760.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO20G01760.1NO20G01760.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G01760 ID=NO20G01760|Name=NO20G01760|organism=Nannochloropsis oceanica|type=gene|length=2558bp
CTCTAGATTAGCTCACGCATCCAAGCAGGAGTGTCACCTTGTAAAATAGA
TCTTGCCAGCATCATGGGTAGCAGCGCTCCCTTCGTCCAAGAAGCAGCCC
GCTTCTTCATTATCCTGTTCGCCAACGTACCCATGGGGGTTTGTGGCTTC
GGGGACGCGATTGTAATGCACATGGCCTTGACGCTGTGTGGTATGgtaag
gcgggagggaagaggattgatgatgtggtggctggcggagggagggagtg
aaactaggtgatgacttagctggggtcccccccaaaaagagcggtaacca
ttatccctccacagaccagacagacatggggagacaagtgaaggcacaaa
ttcttgctgccagatcatcactgctcgcttcttcctcgcatcctttttgt
gcgcggaggcctggacatcttcgtccgccatatacttttttctgcaggcc
gtcttctctcctcaacccacctccccagtcagtgccccagtcaccaaacc
tgtccttaaactcacagtctcgttcaatccatccaataccgctttccccc
atttgaatctcaaactttctcttctgtccccacccgccctcccaacaccc
agAGCTTTCCCGGTGTCTGCTCGACCGCCATCTCCGAGGCCGTCTTCAAC
TTGACCGTCGGGGGCCTGGCTGCCATGGCCGTGCAAAGCGCATTGATATG
GAGAGACGTCAATTGGGAGgtgaggagctggacagagggagtgaggaaca
gaggtagggagggcgagagatagggaaaaacgcgggaggaggctggatat
cctaagccattcctggtcaaggaaattttgccttattggctgtgtcgctt
ataatatacacctgattgtttggcgcttcttacatcgactggtcgttcat
cttgagccatggcttttttttgccttttttgtcacgacgcagcatggaga
tacggcatgtaccgacgaaatgcacatcaacttcaccatgctcggccctg
gaatcctaattgcggctcggccaacatttcggccaacatttaaaaccaag
gctgcatctcattttattttccatcacattctctcaccctcctcccctcc
cttccacccaccaacagCTCGTCCGCCTCCTTGTGACCCCCATCGTGGTC
GGTACTGGCCTAGGTCTTGTCGCACTATATCACATCCACTCTCTTTGGCT
CAAGCAAGTCCTTGGGATCATTTTCCTGTCGGTGGGGTGCTACCAAATAC
AGGGTGAAGTTATGCGAGCCAAGGGCTTAATAGCGGAAGGAGGATCAGGA
GAAAGAAGAGGGCAGCTGGTGGTGAAGGGGTCGGACAAGGAGGGGCTGCG
GCAGATGGGGAGAGTGTTGGGACTTGCGTCGGGCGTGCTGGCTGGCTTGT
TTGGCACGGGGGGGCCGCCGTTGATGGTGCTTGTGGCTGTTACGGATGTG
GGGAAGGATGAGTGGCGTGCGAGCAATGCCGTCATTTGGTTGGTCGACAA
TGTGGTCAGATTTGCGTATCTGTATGCGGTGCAACGACAGgtaaatgctt
tggtggggaagggacgatgaaggagaaggaatcgtcgaagggagggggtg
agggaggagggggaagattaaaatgccaagcccgtgctacccccaccact
gaatccttgttcagcgcttctaagatgaagtgtctcattcgtccttaatc
ctcccttccaaccctctccaacctcccaattgcactaaacagATGGCCTT
GCTCAATGACGGTCCCAGCCTTGTGAGTCTGATGATAGCCGGCGGTGTGG
GCGTGTATGCAGGATCGGTTCTTTCTCCAATGGTCGATGGGGCCCTCTTT
CGCCGGCTCCTGATTCTCCTTATGCTGTTGGGTGCGAACGTCATGTTGTT
TGCAGGCACTCCCGGGGGTGTGGCCTTGTCTGGAGTCCTCTCCATTTTTT
CCCTCCTCATTTTGTATATCCTAGCCTTGTGGCATCAACCTCTTTTGCTC
GCCAAGGGAGGTAATAACCTGGCACCGGCGGGCGTGGGAATGGAAGAAGA
GGCGGGTAGTCATCGGCCGCAGCGATGGTTGGGAAACGCTGGATACAACC
AGGTGGCGACCCGGGAGCAGGAGGAAGATGGAGAAGAGGAGACTGATGAG
CTGCTTGTGGACAAGCATGAGGGGAAGGAAAATGTCAATGAAGGAAAGAG
CGGTTGTAAATCTCAAACGACGATTGAGATGGTGGTCGTATGACGACAGG
AGTAAAATTAGGATGCTGATTGCACAAAGGGGCGCGCAACTATCAACGAT
TGATAATGTGGTGACGGAAGGTAGGATAGGGAGATTGCGAAAGAGATTTG
TTGGGGTTAGGAGAAATGCAAAGCATACATGTACAGAGCAAGTGCTTCTT
TACTCATCAAACGAACGGTGCATACATAAACGAATGGATAATGATGACAA
CGAATAAATGAATGTGCTTGCGGGCTGAGAATAGTGGGAGGCGGTTACAA
TTATTGAATTGATGACAAAAATCGAAGTAAAGTAAAAAGTAAATTGTTTT
CTATTGAG
back to top

protein sequence of NO20G01760.2

>NO20G01760.2-protein ID=NO20G01760.2-protein|Name=NO20G01760.2|organism=Nannochloropsis oceanica|type=polypeptide|length=323bp
MAVQSALIWRDVNWELVRLLVTPIVVGTGLGLVALYHIHSLWLKQVLGII
FLSVGCYQIQGEVMRAKGLIAEGGSGERRGQLVVKGSDKEGLRQMGRVLG
LASGVLAGLFGTGGPPLMVLVAVTDVGKDEWRASNAVIWLVDNVVRFAYL
YAVQRQMALLNDGPSLVSLMIAGGVGVYAGSVLSPMVDGALFRRLLILLM
LLGANVMLFAGTPGGVALSGVLSIFSLLILYILALWHQPLLLAKGGNNLA
PAGVGMEEEAGSHRPQRWLGNAGYNQVATREQEEDGEEETDELLVDKHEG
KENVNEGKSGCKSQTTIEMVVV*
back to top

protein sequence of NO20G01760.1

>NO20G01760.1-protein ID=NO20G01760.1-protein|Name=NO20G01760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=391bp
MGSSAPFVQEAARFFIILFANVPMGVCGFGDAIVMHMALTLCGMSFPGVC
STAISEAVFNLTVGGLAAMAVQSALIWRDVNWELVRLLVTPIVVGTGLGL
VALYHIHSLWLKQVLGIIFLSVGCYQIQGEVMRAKGLIAEGGSGERRGQL
VVKGSDKEGLRQMGRVLGLASGVLAGLFGTGGPPLMVLVAVTDVGKDEWR
ASNAVIWLVDNVVRFAYLYAVQRQMALLNDGPSLVSLMIAGGVGVYAGSV
LSPMVDGALFRRLLILLMLLGANVMLFAGTPGGVALSGVLSIFSLLILYI
LALWHQPLLLAKGGNNLAPAGVGMEEEAGSHRPQRWLGNAGYNQVATREQ
EEDGEEETDELLVDKHEGKENVNEGKSGCKSQTTIEMVVV*
back to top
Synonyms
Publications