NO20G01750, NO20G01750 (gene) Nannochloropsis oceanica

Overview
NameNO20G01750
Unique NameNO20G01750
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1369
Alignment locationchr20:528943..530311 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:528943..530311 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005358Puta_zinc/iron-chelating_dom
Homology
[Close]
BLAST of NO20G01750 vs. NCBI_GenBank
Match: EWM22049.1 (Uncharacterized protein family UPF0153 [Nannochloropsis gaditana])

HSP 1 Score: 314.3 bits (804), Expect = 4.400e-82
Identity = 175/318 (55.03%), Postives = 196/318 (61.64%), Query Frame = 0 
Query:   15 SVVESFLLPFRPASPSTLPSL-----QLHQLDGARQLPLSRPIQHLHATES---LEGNAEAGESVDPAASSAPAVPKPFVSRRVRRGPIGAAASLSNKXXXXXXXXXXXXXXXXXXXXXXXXXXAPFIPSSTPMVLKLSNKWACVANCGACCYLAPSERPYLMDYFDDPDDLALYNSMTGDDGWCVHYDKTARACTVFEDRPWFCRVEGETFGKMYGVTPPEMDKFCTSCCREQIADVYGTVSTEMTTFNLAIKHLKGANTAPDXXXXXXXXXXFGKAAQVKALHEAAAAFVKPVVPIDPFTGEESTKVAVKADWINT 325
            + V SF L FRP S  + P+L     Q    +G R+ P   P      T S    E  A + + VD  A+  P  PKPF+SRRVRRGPIGAA S                                  P+STP VLK+S KWACVANCGACCYLAPSERPYL+DYFDDP DLA YNSM GDDGWC+HYDK ARACTVFEDRPWFCRVEG+TF KMYGVT  EMDKFCTSCCREQIADVYGT S EM +FN+AIKHLK A+              FGK A  +A+ EA    V P+VPIDPFT E S K A  ADWI +
Sbjct:   16 AAVHSFPLSFRPVSSFSGPALPPVTRQCLAREGRRR-PFDGPQPLRSGTSSHSAEEREASSRDDVDSRATPVPK-PKPFISRRVRRGPIGAATS----------GIDGASKSSRQVNGSTAIHNKSVTPTSTPAVLKVSKKWACVANCGACCYLAPSERPYLLDYFDDPKDLAAYNSMVGDDGWCIHYDKAARACTVFEDRPWFCRVEGKTFEKMYGVTGSEMDKFCTSCCREQIADVYGTTSGEMLSFNMAIKHLK-ASAGDARSERSKGAGGFGKGA--RAVDEAVGEPVAPIVPIDPFTNEASDKEAAMADWIGS 318
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BLAST of NO20G01750 vs. NCBI_GenBank
Match: CBN74606.1 (Fe-S-cluster oxidoreductase-like [Ectocarpus siliculosus])

HSP 1 Score: 188.3 bits (477), Expect = 3.700e-44
Identity = 82/132 (62.12%), Postives = 98/132 (74.24%), Query Frame = 0 
Query:  140 MVLKLSNKWACVANCGACCYLAPSERPYLMDYFDDPDDLALYNSMTGDDGWCVHYDKTARACTVFEDRPWFCRVEGETFGKMYGVTPPEMDKFCTSCCREQIADVYGTVSTEMTTFNLAIKHL-KGANTAPD 271
            ++LK S++WACV NCGACCYLAP ERP L +Y  DP++  LY SMTG DGWC H+DK +RACTV+ DRP FCRVE ETFG MYGV P +MD FC+SCC EQI+DVYG  S E+  FN A+  L +G    PD
Sbjct:  126 VLLKRSSRWACVKNCGACCYLAPDERPDLAEYLPDPEEFDLYMSMTGSDGWCKHFDKESRACTVYSDRPRFCRVETETFGSMYGVEPEDMDDFCSSCCNEQISDVYGAESKELRVFNEALAALERGERPKPD 257
[Close]
BLAST of NO20G01750 vs. NCBI_GenBank
Match: PLS68614.1 (YkgJ family cysteine cluster protein [Cyanobacteria bacterium M5B4])

HSP 1 Score: 151.4 bits (381), Expect = 5.000e-33
Identity = 61/113 (53.98%), Postives = 82/113 (72.57%), Query Frame = 0 
Query:  147 KWACVANCGACCYLAPSERPYLMDYFDDPDDLALYNSMTGDDGWCVHYDKTARACTVFEDRPWFCRVEGETFGKMYGVTPPEMDKFCTSCCREQIADVYGTVSTEMTTFNLAI 260
            +W CV NCGACCYL P++RP L +YF  P+++A Y ++ G+DGWC+HYD++ R CT++ DRP+FCRVE E F  +YGV P E+++F   CCRE I D+YGT S E   F  AI
Sbjct:    3 QWQCVKNCGACCYLNPADRPSL-EYFLTPEEMAFYLTLVGEDGWCIHYDQSKRECTIYADRPFFCRVEAEVFLALYGVPPEELNEFAIECCREHITDMYGTDSPESQRFEAAI 114
[Close]
BLAST of NO20G01750 vs. NCBI_GenBank
Match: WP_008313840.1 (YkgJ family cysteine cluster protein [Leptolyngbya sp. PCC 6406])

HSP 1 Score: 150.2 bits (378), Expect = 1.100e-32
Identity = 60/113 (53.10%), Postives = 83/113 (73.45%), Query Frame = 0 
Query:  148 WACVANCGACCYLAPSERPYLMDYFDDPDDLALYNSMTGDDGWCVHYDKTARACTVFEDRPWFCRVEGETFGKMYGVTPPEMDKFCTSCCREQIADVYGTVSTEMTTFNLAIK 261
            W C+ +CGACC+L PS+RP L D +  P+DLA Y S+ G DGWC+H+D   R C ++EDRPWFCRV+ +TF  +YG+TP ++D+F  +CC+ QIA+VYG  S EM  F +AI+
Sbjct:    4 WHCIQSCGACCHLDPSDRPDL-DQYLSPEDLAHYLSLVGADGWCIHFDADQRRCGIYEDRPWFCRVQADTFNALYGITPADLDEFAIACCQTQIAEVYGEGSDEMERFEVAIE 115
[Close]
BLAST of NO20G01750 vs. NCBI_GenBank
Match: WP_035985722.1 (YkgJ family cysteine cluster protein [Leptolyngbya sp. KIOST-1])

HSP 1 Score: 147.9 bits (372), Expect = 5.500e-32
Identity = 63/112 (56.25%), Postives = 76/112 (67.86%), Query Frame = 0 
Query:  148 WACVANCGACCYLAPSERPYLMDYFDDPDDLALYNSMTGDDGWCVHYDKTARACTVFEDRPWFCRVEGETFGKMYGVTPPEMDKFCTSCCREQIADVYGTVSTEMTTFNLAI 260
            W CV  CGACC+LAP ERP L  Y  DPD LALY SM G+DGWC+HY+K  R C ++ +RP FCRV   TF  M+GVT  ++D F   CC+E IAD+YG  S EM  FN A+
Sbjct:    4 WQCVKTCGACCFLAPDERPDLESYL-DPDQLALYLSMVGEDGWCIHYNKGDRLCAIYPERPTFCRVTFSTFETMFGVTADQLDDFAIDCCQEHIADIYGDESPEMERFNRAV 114
[Close]
BLAST of NO20G01750 vs. NCBI_GenBank
Match: WP_099534497.1 (YkgJ family cysteine cluster protein [Limnothrix sp. PR1529])

HSP 1 Score: 146.7 bits (369), Expect = 1.200e-31
Identity = 59/112 (52.68%), Postives = 81/112 (72.32%), Query Frame = 0 
Query:  148 WACVANCGACCYLAPSERPYLMDYFDDPDDLALYNSMTGDDGWCVHYDKTARACTVFEDRPWFCRVEGETFGKMYGVTPPEMDKFCTSCCREQIADVYGTVSTEMTTFNLAI 260
            W C+  CGACC+L P+ERP L  Y  +P+DL LY SM G DGWC++YD+  R CT+++DRPWFCRV+ ETF +M+ + P E++ F   CCR+QI+ VYG +S EM  F+ A+
Sbjct:    4 WQCIKGCGACCHLDPNERPDLESYL-EPEDLLLYLSMVGPDGWCMNYDQLNRECTIYDDRPWFCRVQVETFQRMFEIEPAELNDFAIECCRDQISGVYGDLSLEMHRFDRAV 114
[Close]
BLAST of NO20G01750 vs. NCBI_GenBank
Match: WP_073606725.1 (YkgJ family cysteine cluster protein [Phormidium tenue] >OKH50912.1 Fe-S cluster protein [Phormidium tenue NIES-30])

HSP 1 Score: 146.4 bits (368), Expect = 1.600e-31
Identity = 63/112 (56.25%), Postives = 76/112 (67.86%), Query Frame = 0 
Query:  148 WACVANCGACCYLAPSERPYLMDYFDDPDDLALYNSMTGDDGWCVHYDKTARACTVFEDRPWFCRVEGETFGKMYGVTPPEMDKFCTSCCREQIADVYGTVSTEMTTFNLAI 260
            W CV +CGACC+LAP ERP L  Y  +PD LALY SM G+DGWC+HYD   R CT++ DRP FC+V   TF  M+GV   E+D F   CC+E IAD+YG  S EM  FN A+
Sbjct:    4 WQCVKSCGACCFLAPDERPDLDSYL-EPDQLALYLSMVGEDGWCIHYDAGDRLCTIYADRPSFCQVTFSTFETMFGVEADELDDFAIDCCQEHIADIYGEASPEMERFNGAV 114
[Close]
BLAST of NO20G01750 vs. NCBI_GenBank
Match: WP_106903746.1 (YkgJ family cysteine cluster protein, partial [filamentous cyanobacterium CCT1] >PSN11149.1 YkgJ family cysteine cluster protein, partial [filamentous cyanobacterium CCT1])

HSP 1 Score: 146.0 bits (367), Expect = 2.100e-31
Identity = 63/112 (56.25%), Postives = 76/112 (67.86%), Query Frame = 0 
Query:  148 WACVANCGACCYLAPSERPYLMDYFDDPDDLALYNSMTGDDGWCVHYDKTARACTVFEDRPWFCRVEGETFGKMYGVTPPEMDKFCTSCCREQIADVYGTVSTEMTTFNLAI 260
            W CV +CGACC+LAP ERP L  Y D  D LALY S+ G+DGWC+HYDK  R CT++ DRP FCRV   TF  M+GV   E+D F   CC+E IAD+YG  S EM  F+ A+
Sbjct:    4 WQCVKSCGACCFLAPDERPDLESYLDS-DQLALYLSLVGNDGWCIHYDKGDRTCTIYPDRPDFCRVTFSTFETMFGVASDELDDFAIDCCQEHIADIYGDESPEMERFDRAV 114
[Close]
BLAST of NO20G01750 vs. NCBI_GenBank
Match: WP_009342524.1 (MULTISPECIES: YkgJ family cysteine cluster protein [Aphanizomenonaceae] >EFA73512.1 Protein of unknown function UPF0153 [Raphidiopsis brookii D9] >OHY33482.1 Fe-S cluster protein [Cylindrospermopsis raciborskii MVCC14] >OPH11357.1 zinc/iron-chelating domain-containing protein [Cylindrospermopsis raciborskii CENA302] >OSO97421.1 zinc/iron-chelating domain-containing protein [Cylindrospermopsis raciborskii CENA303])

HSP 1 Score: 145.6 bits (366), Expect = 2.700e-31
Identity = 62/117 (52.99%), Postives = 79/117 (67.52%), Query Frame = 0 
Query:  148 WACVANCGACCYLAPSERPYLMDYFDDPDDLALYNSMTGDDGWCVHYDKTARACTVFEDRPWFCRVEGETFGKMYGVTPPEMDKFCTSCCREQIADVYGTVSTEMTTFNLAIKHLKG 265
            W CV  CGACC+L PS+RPYL DY   P +L+LY  + G+DGWCV++D+  R CT++ DRP FCRVE +TF KMYG+ P E++ F   CC +QI  VYG  S EM  F    KH+ G
Sbjct:    4 WQCVKQCGACCHLDPSDRPYLSDYL-SPTELSLYLRLVGEDGWCVNFDRQTRECTIYRDRPSFCRVESKTFEKMYGIKPEELNDFAIDCCHQQIDSVYGDRSLEMIRF----KHILG 115
[Close]
BLAST of NO20G01750 vs. NCBI_GenBank
Match: WP_006277898.1 (MULTISPECIES: YkgJ family cysteine cluster protein [Cylindrospermopsis] >EFA69285.1 protein of unknown function UPF0153 [Cylindrospermopsis raciborskii CS-505] >KRH98411.1 Fe-S cluster protein [Cylindrospermopsis sp. CR12] >OBU76210.1 Fe-S cluster protein [Cylindrospermopsis raciborskii CS-505] >OHY33544.1 Fe-S cluster protein [Cylindrospermopsis raciborskii CS-508] >PNJ96587.1 zinc/iron-chelating domain-containing protein [Cylindrospermopsis raciborskii C03] >PNJ97555.1 zinc/iron-chelating domain-containing protein [Cylindrospermopsis raciborskii C07] >PNJ97618.1 zinc/iron-chelating domain-containing protein [Cylindrospermopsis raciborskii C04] >PNK05391.1 zinc/iron-chelating domain-containing protein [Cylindrospermopsis raciborskii S14] >PNK08686.1 zinc/iron-chelating domain-containing protein [Cylindrospermopsis raciborskii S10] >PNK10537.1 zinc/iron-chelating domain-containing protein [Cylindrospermopsis raciborskii S07] >PNK15813.1 zinc/iron-chelating domain-containing protein [Cylindrospermopsis raciborskii S06] >PNK19748.1 zinc/iron-chelating domain-containing protein [Cylindrospermopsis raciborskii S01] >PNK20287.1 zinc/iron-chelating domain-containing protein [Cylindrospermopsis raciborskii S05])

HSP 1 Score: 145.2 bits (365), Expect = 3.600e-31
Identity = 60/109 (55.05%), Postives = 75/109 (68.81%), Query Frame = 0 
Query:  148 WACVANCGACCYLAPSERPYLMDYFDDPDDLALYNSMTGDDGWCVHYDKTARACTVFEDRPWFCRVEGETFGKMYGVTPPEMDKFCTSCCREQIADVYGTVSTEMTTFN 257
            W CV  CGACC+L PS+RPYL DY   P +L+LY  + G+DGWCV++D   R CT++ DRP FCRVE +TF KMYG+ P E++ F   CC +QI  VYG  S EM  FN
Sbjct:    4 WQCVKQCGACCHLDPSDRPYLSDYL-SPTELSLYLRLVGEDGWCVNFDHQTRECTIYRDRPSFCRVESKTFEKMYGIKPEELNDFAIDCCHQQIDSVYGDRSLEMIRFN 111
The following BLAST results are available for this feature:
BLAST of NO20G01750 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22049.14.400e-8255.03Uncharacterized protein family UPF0153 [Nannochlor... [more]
CBN74606.13.700e-4462.12Fe-S-cluster oxidoreductase-like [Ectocarpus silic... [more]
PLS68614.15.000e-3353.98YkgJ family cysteine cluster protein [Cyanobacteri... [more]
WP_008313840.11.100e-3253.10YkgJ family cysteine cluster protein [Leptolyngbya... [more]
WP_035985722.15.500e-3256.25YkgJ family cysteine cluster protein [Leptolyngbya... [more]
WP_099534497.11.200e-3152.68YkgJ family cysteine cluster protein [Limnothrix s... [more]
WP_073606725.11.600e-3156.25YkgJ family cysteine cluster protein [Phormidium t... [more]
WP_106903746.12.100e-3156.25YkgJ family cysteine cluster protein, partial [fil... [more]
WP_009342524.12.700e-3152.99MULTISPECIES: YkgJ family cysteine cluster protein... [more]
WP_006277898.13.600e-3155.05MULTISPECIES: YkgJ family cysteine cluster protein... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002711NSK002711Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G01750.1NO20G01750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594861gene_6394Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100052g2gene8374Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G01750.1NO20G01750.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G01750 ID=NO20G01750|Name=NO20G01750|organism=Nannochloropsis oceanica|type=gene|length=1369bp
GTTGCGTTTGTGGTAGTCGCGGTGATGAGCGAATATGTGTACTGTCGTCG
AATTAATCCGCGTTGATTGCAAAGCCAAAGCAAATGGAAGAAATATCGCC
TCCGCCACTCACAAGGAAAGTTGCCTTGCCCATTTCCTTCCTCGTCAGCC
AATATTGACCTGCACCATTTTTCCCACACATACCCCCGTAGGCTAAACCG
GCAACCGGTCGACTAGGTTGATGATGCAGTGCTTTCTTTTCCTATTCCTT
GTCCTGCTCCTTTCCGTGGTCGAGTCTTTCCTCCTTCCCTTCCGCCCAGC
CTCCCCATCCACCCTACCATCATTGCAGCTACATCAACTAGACGGAGCAA
GGCAGTTGCCGCTTTCCCGACCAATACAACATTTGCATGCCACAGAATCT
TTAGAAGGCAATGCAGAAGCTGGAGAATCCGTCGATCCAGCTGCATCCTC
TGCACCCGCAGTGCCCAAGCCTTTTGTCTCCCGCCGCGTGCGCCGCGGGC
CCATTGGGGCAGCCGCCAGCCTCAGCAACAAGAAGAAAAAATCAGCAGAG
GAAATGGATAAGACTTCTTCCCTCTCTCCAGTTGCCACCACCTCGACTGC
TTCTACTTCCGCACCCTTCATCCCTTCCTCGACCCCCATGGTGCTCAAAC
TGAGTAACAAGTGGGCATGCGTTGCAAACTGCGGGGCTTGTTGCTATCTA
GCCCCTTCGGAACGACCCTACCTCATGGACTACTTCGACGATCCCGATGA
CCTGGCATTGTACAACAGCATGACAGGTGATGATGGTTGGTGCGTGCATT
ACGATAAAACGGCCAGGGCCTGCACGGTATTTGAGGACCGGCCCTGGTTT
TGTCGAGTGGAAGGGGAGACGTTCGGAAAGATGTATGGAGTGACACCCCC
AGAGATGGACAAGTTCTGCACCTCCTGCTGCCGGGAGCAGATTGCTGATG
TGTATGGGACGGTGAGCACAGAAATGACGACTTTCAATCTGGCTATCAAG
CATCTGAAGGGTGCGAACACAGCGCCAGACGATGGGGGCAAGAAGAAGAA
GGGTGGTGGCTTTGGCAAGGCGGCCCAGGTCAAGGCGCTGCACGAGGCGG
CGGCGGCGTTCGTGAAGCCTGTCGTGCCGATCGACCCATTCACAGGAGAA
GAGTCGACTAAGGTGGCCGTCAAGGCAGATTGGATAAATACACAAGAATG
ACGCCGAGGGAAAAAGAAAAGATTAGAAAATTGTATGAAACGAATCCAAA
AAGTGTATGCAAATGAAAATTGAAAGTAGCTCCATTGACGCAAGACAATG
AGACTGACAAGTGAAGCAAGCAGAACAAAGCGGGCATCTCTATGGAATTT
AAACCTTATACATGCGCGG
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protein sequence of NO20G01750.1

>NO20G01750.1-protein ID=NO20G01750.1-protein|Name=NO20G01750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=327bp
MMQCFLFLFLVLLLSVVESFLLPFRPASPSTLPSLQLHQLDGARQLPLSR
PIQHLHATESLEGNAEAGESVDPAASSAPAVPKPFVSRRVRRGPIGAAAS
LSNKKKKSAEEMDKTSSLSPVATTSTASTSAPFIPSSTPMVLKLSNKWAC
VANCGACCYLAPSERPYLMDYFDDPDDLALYNSMTGDDGWCVHYDKTARA
CTVFEDRPWFCRVEGETFGKMYGVTPPEMDKFCTSCCREQIADVYGTVST
EMTTFNLAIKHLKGANTAPDDGGKKKKGGGFGKAAQVKALHEAAAAFVKP
VVPIDPFTGEESTKVAVKADWINTQE*
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Synonyms
Publications