NO20G01730, NO20G01730 (gene) Nannochloropsis oceanica

Overview
NameNO20G01730
Unique NameNO20G01730
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1002
Alignment locationchr20:523446..524447 -

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Properties
Property NameValue
DescriptionFgd6 protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:523446..524447 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0032266phosphatidylinositol-3-phosphate binding
GO:0046872metal ion binding
GO:0046872metal ion binding
GO:0032266phosphatidylinositol-3-phosphate binding
Vocabulary: Biological Process
TermDefinition
GO:0000910cytokinesis
GO:0000724double-strand break repair via homologous recombination
GO:0000724double-strand break repair via homologous recombination
GO:0000281mitotic cytokinesis
Vocabulary: INTERPRO
TermDefinition
IPR011011Znf_FYVE_PHD
IPR017455Znf_FYVE-rel
IPR028730ZFYVE26
IPR000306Znf_FYVE
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
[Close]
BLAST of NO20G01730 vs. NCBI_GenBank
Match: XP_005854358.1 (fgd6 protein [Nannochloropsis gaditana CCMP526] >EKU21998.1 fgd6 protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 224.2 bits (570), Expect = 6.100e-55
Identity = 140/322 (43.48%), Postives = 173/322 (53.73%), Query Frame = 0 
Query:    1 MEINANGGEVPLSWRHLQQLDSSSDGPSHRDGVEEDDTHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDLARRGSPQKKRHHVHPQDLDPNACYDVDWVQDDSAFSCMVCTADFSPLLRRKHHCRACGRVVCSSCSRARVLVVGLRGPQKACTDCVRAAEKLRACESISEDFEGATRNTEEVQEGDEGMXXXXXXXXXXXXXXXXXXXXXXXXRTGGFTCSPGGISTSTSNSTARVERKVECGKQDEGATAXXXXXXXXXXXXXXXXXXPRRREKNTRVEGKRSSSSTVGMLAMGFTALAVGSVLALNPKLLSTV 323
            ME + N G VPLSWRH+QQ ++ S        +  +DT                                    GDL+R+   + K+HHVHP +LDP   YDV+WV D+ A SCMVC A+FSPL+RRKHHCRACGRVVCS CS ARVLV+GLRG QKACTDCVR AEKLRACESISED EG  R TEE +E D  M                        R+ G  C         SNS+  VERKVE  KQ+E   A                     ++K  R + K  S++++G+LA+G TALA+GS LA++PKLLS +
Sbjct:    1 MERSPN-GRVPLSWRHVQQFETRSPKSIQAALLRGEDTLSTHSVASRLSNAKSSYSATTFQSFATSNYSGFSAAGDLSRK--MKNKKHHVHPSELDPTVAYDVEWVHDELALSCMVCMAEFSPLMRRKHHCRACGRVVCSGCSSARVLVLGLRGLQKACTDCVRGAEKLRACESISEDSEGGVRLTEEQEENDATM-----------EGLKKNEMTRETERSPGRVCG--------SNSSTHVERKVEGDKQEERQQALENDDEPFPQQAG--------KKKKQRSKDKTFSTASIGLLAVGCTALAIGSALAMSPKLLSGI 292
[Close]
BLAST of NO20G01730 vs. NCBI_GenBank
Match: EWM22069.1 (fgd6 protein [Nannochloropsis gaditana])

HSP 1 Score: 223.0 bits (567), Expect = 1.400e-54
Identity = 140/322 (43.48%), Postives = 172/322 (53.42%), Query Frame = 0 
Query:    1 MEINANGGEVPLSWRHLQQLDSSSDGPSHRDGVEEDDTHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDLARRGSPQKKRHHVHPQDLDPNACYDVDWVQDDSAFSCMVCTADFSPLLRRKHHCRACGRVVCSSCSRARVLVVGLRGPQKACTDCVRAAEKLRACESISEDFEGATRNTEEVQEGDEGMXXXXXXXXXXXXXXXXXXXXXXXXRTGGFTCSPGGISTSTSNSTARVERKVECGKQDEGATAXXXXXXXXXXXXXXXXXXPRRREKNTRVEGKRSSSSTVGMLAMGFTALAVGSVLALNPKLLSTV 323
            ME + N G VPLSWRH+QQ ++ S        +  +DT                                    GDL+R+   + K+HHVHP +LDP   YDV+WV D+ A SCMVC A+FSPL+RRKHHCRACGRVVCS CS ARVLV+GLRG QKACTDCVR AEKLRACESISED EG  R TEE +E D  M                        R+ G  C         SNS+  VERKVE  KQ+E   A                     ++K  R + K  S++ +G+LA+G TALA+GS LA++PKLLS +
Sbjct:    1 MERSPN-GRVPLSWRHVQQFETRSPKSIQAALLRGEDTLSTHSVASRLSNAKSSYSATTFQSFATSNYSGFSAAGDLSRK--MKNKKHHVHPSELDPTVAYDVEWVHDELALSCMVCMAEFSPLMRRKHHCRACGRVVCSGCSSARVLVLGLRGLQKACTDCVRGAEKLRACESISEDSEGGVRLTEEQEENDATM-----------EGLKKNEMTRETERSPGRVCG--------SNSSTHVERKVEGDKQEERQQALENDDEPFPQQAG--------KKKKQRSKDKTFSTAGIGLLAVGCTALAIGSALAMSPKLLSGI 292
[Close]
BLAST of NO20G01730 vs. NCBI_GenBank
Match: OAQ28787.1 (hypothetical protein K457DRAFT_126461 [Mortierella elongata AG-77])

HSP 1 Score: 76.6 bits (187), Expect = 1.600e-10
Identity = 32/61 (52.46%), Postives = 41/61 (67.21%), Query Frame = 0 
Query:  105 WVQDDSAFSCMVCTADFSPLLRRKHHCRACGRVVCSSCSRARVLVVGLRGPQ--KACTDCV 164
            WV D SA  CM+C+ +F  L RRKHHCRACG+VVC SCS   +L+ G    +  +AC DC+
Sbjct:  984 WVPDQSATRCMICSEEFGTLFRRKHHCRACGKVVCHSCSSRTILIKGAHSEKVGRACDDCI 1044
[Close]
BLAST of NO20G01730 vs. NCBI_GenBank
Match: XP_008869774.1 (hypothetical protein, variant 1 [Aphanomyces invadans] >ETW01926.1 hypothetical protein, variant 1 [Aphanomyces invadans])

HSP 1 Score: 72.8 bits (177), Expect = 2.300e-9
Identity = 37/85 (43.53%), Postives = 46/85 (54.12%), Query Frame = 0 
Query:   79 RRGSPQKKRHHVHPQDLDPNACYDVDWVQDDSAFSCMVCTADFSPLLRRKHHCRACGRVVCSSCSRARVLVVGLRGPQKACTDCV 164
            R    Q KR    P+D   +  Y V WV DD+   CM+C   F    RR HHCR+CG +VCS CS+AR  V GL G  + C  C+
Sbjct:  111 REPEMQWKRVPAPPKDRRTDEPYTVWWVDDDALVGCMICHVPFGMYFRR-HHCRSCGDIVCSDCSKARKDVYGLDGLHRVCDACM 194
[Close]
BLAST of NO20G01730 vs. NCBI_GenBank
Match: XP_008869777.1 (hypothetical protein, variant 4 [Aphanomyces invadans] >ETW01929.1 hypothetical protein, variant 4 [Aphanomyces invadans])

HSP 1 Score: 72.8 bits (177), Expect = 2.300e-9
Identity = 37/85 (43.53%), Postives = 46/85 (54.12%), Query Frame = 0 
Query:   79 RRGSPQKKRHHVHPQDLDPNACYDVDWVQDDSAFSCMVCTADFSPLLRRKHHCRACGRVVCSSCSRARVLVVGLRGPQKACTDCV 164
            R    Q KR    P+D   +  Y V WV DD+   CM+C   F    RR HHCR+CG +VCS CS+AR  V GL G  + C  C+
Sbjct:  111 REPEMQWKRVPAPPKDRRTDEPYTVWWVDDDALVGCMICHVPFGMYFRR-HHCRSCGDIVCSDCSKARKDVYGLDGLHRVCDACM 194
[Close]
BLAST of NO20G01730 vs. NCBI_GenBank
Match: XP_008869778.1 (hypothetical protein, variant 5 [Aphanomyces invadans] >XP_008869779.1 hypothetical protein, variant 6 [Aphanomyces invadans] >ETW01930.1 hypothetical protein, variant 5 [Aphanomyces invadans] >ETW01931.1 hypothetical protein, variant 6 [Aphanomyces invadans])

HSP 1 Score: 72.8 bits (177), Expect = 2.300e-9
Identity = 37/85 (43.53%), Postives = 46/85 (54.12%), Query Frame = 0 
Query:   79 RRGSPQKKRHHVHPQDLDPNACYDVDWVQDDSAFSCMVCTADFSPLLRRKHHCRACGRVVCSSCSRARVLVVGLRGPQKACTDCV 164
            R    Q KR    P+D   +  Y V WV DD+   CM+C   F    RR HHCR+CG +VCS CS+AR  V GL G  + C  C+
Sbjct:  111 REPEMQWKRVPAPPKDRRTDEPYTVWWVDDDALVGCMICHVPFGMYFRR-HHCRSCGDIVCSDCSKARKDVYGLDGLHRVCDACM 194
[Close]
BLAST of NO20G01730 vs. NCBI_GenBank
Match: XP_021878729.1 (hypothetical protein BCR41DRAFT_398970 [Lobosporangium transversale] >ORZ09102.1 hypothetical protein BCR41DRAFT_398970 [Lobosporangium transversale])

HSP 1 Score: 72.8 bits (177), Expect = 2.300e-9
Identity = 31/61 (50.82%), Postives = 40/61 (65.57%), Query Frame = 0 
Query:  105 WVQDDSAFSCMVCTADFSPLLRRKHHCRACGRVVCSSCSRARVLVVGLRGPQ--KACTDCV 164
            WV D SA  CM+C+ +F  L RRKHHCRACG+VVC SCS   +L+      +  +AC DC+
Sbjct: 1026 WVPDHSATRCMICSEEFGTLFRRKHHCRACGKVVCHSCSSRNILIRSGNSEKVGRACDDCI 1086
[Close]
BLAST of NO20G01730 vs. NCBI_GenBank
Match: XP_008610323.1 (hypothetical protein SDRG_06325 [Saprolegnia diclina VS20] >EQC36217.1 hypothetical protein SDRG_06325 [Saprolegnia diclina VS20])

HSP 1 Score: 72.4 bits (176), Expect = 3.000e-9
Identity = 36/94 (38.30%), Postives = 52/94 (55.32%), Query Frame = 0 
Query:   94 DLDPNACYDVDWVQDDSAFSCMVCTADFSPLLRRKHHCRACGRVVCSSCSRARVLVVGLRGPQKACTDCVRAAEKL-----RACESISEDFEGA 183
            DL P   Y VDWV+D+   +C +C   F   +RR HHCR CG +VC+ C+ AR  V GL G ++ C  C+     +     RA E + +D +G+
Sbjct:   10 DLKPGEAYAVDWVRDEDVHACALCATAFGFFVRR-HHCRGCGHIVCAECAVARREVYGLLGLERVCDACLSNGVWVDPVARRALEKLEQDEDGS 102
[Close]
BLAST of NO20G01730 vs. NCBI_GenBank
Match: XP_008610324.1 (hypothetical protein, variant [Saprolegnia diclina VS20] >EQC36218.1 hypothetical protein, variant [Saprolegnia diclina VS20])

HSP 1 Score: 72.4 bits (176), Expect = 3.000e-9
Identity = 36/94 (38.30%), Postives = 52/94 (55.32%), Query Frame = 0 
Query:   94 DLDPNACYDVDWVQDDSAFSCMVCTADFSPLLRRKHHCRACGRVVCSSCSRARVLVVGLRGPQKACTDCVRAAEKL-----RACESISEDFEGA 183
            DL P   Y VDWV+D+   +C +C   F   +RR HHCR CG +VC+ C+ AR  V GL G ++ C  C+     +     RA E + +D +G+
Sbjct:   10 DLKPGEAYAVDWVRDEDVHACALCATAFGFFVRR-HHCRGCGHIVCAECAVARREVYGLLGLERVCDACLSNGVWVDPVARRALEKLEQDEDGS 102
[Close]
BLAST of NO20G01730 vs. NCBI_GenBank
Match: OQS04583.1 (DNA polymerase lambda [Thraustotheca clavata])

HSP 1 Score: 71.6 bits (174), Expect = 5.100e-9
Identity = 33/75 (44.00%), Postives = 46/75 (61.33%), Query Frame = 0 
Query:   88 HHVHPQDLDPNACYDVDWVQDDSAFSCMVCTADFSPLLRRKHHCRACGRVVCSSCSRARVLVVGLRGPQKACTDC 163
            HHV+    +     DV WV + ++  C +C A F  + +R+HHCR CG++VCSSCSR R L+ G R   + CTDC
Sbjct:  710 HHVYELGYE-RTLLDVHWVPNTASSLCCLCFASFGLVSKRRHHCRLCGQLVCSSCSRHRSLLKGSRQLFRTCTDC 783
The following BLAST results are available for this feature:
BLAST of NO20G01730 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005854358.16.100e-5543.48fgd6 protein [Nannochloropsis gaditana CCMP526] >E... [more]
EWM22069.11.400e-5443.48fgd6 protein [Nannochloropsis gaditana][more]
OAQ28787.11.600e-1052.46hypothetical protein K457DRAFT_126461 [Mortierella... [more]
XP_008869774.12.300e-943.53hypothetical protein, variant 1 [Aphanomyces invad... [more]
XP_008869777.12.300e-943.53hypothetical protein, variant 4 [Aphanomyces invad... [more]
XP_008869778.12.300e-943.53hypothetical protein, variant 5 [Aphanomyces invad... [more]
XP_021878729.12.300e-950.82hypothetical protein BCR41DRAFT_398970 [Lobosporan... [more]
XP_008610323.13.000e-938.30hypothetical protein SDRG_06325 [Saprolegnia dicli... [more]
XP_008610324.13.000e-938.30hypothetical protein, variant [Saprolegnia diclina... [more]
OQS04583.15.100e-944.00DNA polymerase lambda [Thraustotheca clavata][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL023nonsL023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002706NSK002706Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G01730.1NO20G01730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G01730.1NO20G01730.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G01730 ID=NO20G01730|Name=NO20G01730|organism=Nannochloropsis oceanica|type=gene|length=1002bp
ATGGAGATCAATGCCAATGGCGGTGAGGTACCCCTGAGCTGGCGACATCT
CCAGCAGCTTGACAGCAGTAGTGATGGCCCCAGCCACCGCGACGGGGTCG
AGGAGGACGACACGCACTCCATGCACTCCCTGGCCAGCCGCGTCTCTAAC
GCTGGCAGTGCCTACTCAGCCGCCACCTTTTACAGCTTCAGTACCTCCAA
CTACTCGGGGTTTTCCGGTGCAGGCGATCTGGCACGACGTGGCTCTCCGC
AAAAGAAGCGCCATCACGTCCACCCGCAAGACTTGGATCCCAATGCGTGT
TACGACGTTGATTGGGTGCAAGATGATTCGGCCTTCTCCTGCATGGTCTG
CACGGCTGATTTCTCTCCCCTCTTGCGCCGCAAGCACCATTGCCGTGCCT
GTGGCCGTGTGGTGTGTTCTAGCTGCTCCAGGGCGCGTGTTTTGGTGGTG
GGTTTACGAGGACCACAGAAGGCATGCACGGATTGTGTACGTGCAGCCGA
GAAACTGCGGGCGTGTGAGAGCATCAGTGAGGATTTTGAAGGAGCGACTC
GTAATACCGAGGAAGTGCAGGAAGGAGATGAAGGAATGGAGAGGGTAGAG
GAGGAAGGAGAAGAAGAGGAAGAAGAAGATGGGGGTGAGGAAGAGGATGA
GAAAGGCTGCAGAACTGGTGGGTTCACTTGCAGCCCCGGTGGAATAAGCA
CCAGCACCAGCAACAGCACGGCTCGCGTGGAACGGAAAGTGGAGTGCGGG
AAGCAAGATGAGGGTGCCACAGCTGCTGCTGCTGCCAAGAAGCTGCAAGA
GATACTGGGGGATGAGGAGGAGTTCATTCCTCGTCGGAGGGAGAAAAATA
CGAGGGTTGAGGGGAAGCGGTCATCGTCGTCGACCGTTGGGATGTTGGCC
ATGGGGTTTACAGCCCTGGCTGTGGGCTCGGTGTTAGCATTGAATCCAAA
GTTGCTCTCGACGGTATCGGCGGTGATAGGACGGGTGGGGGGGAGGAGGT
GA
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protein sequence of NO20G01730.1

>NO20G01730.1-protein ID=NO20G01730.1-protein|Name=NO20G01730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=334bp
MEINANGGEVPLSWRHLQQLDSSSDGPSHRDGVEEDDTHSMHSLASRVSN
AGSAYSAATFYSFSTSNYSGFSGAGDLARRGSPQKKRHHVHPQDLDPNAC
YDVDWVQDDSAFSCMVCTADFSPLLRRKHHCRACGRVVCSSCSRARVLVV
GLRGPQKACTDCVRAAEKLRACESISEDFEGATRNTEEVQEGDEGMERVE
EEGEEEEEEDGGEEEDEKGCRTGGFTCSPGGISTSTSNSTARVERKVECG
KQDEGATAAAAAKKLQEILGDEEEFIPRRREKNTRVEGKRSSSSTVGMLA
MGFTALAVGSVLALNPKLLSTVSAVIGRVGGRR*
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Synonyms
Publications