NO20G01720, NO20G01720 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO20G01720 vs. NCBI_GenBank
Match: EWM22065.1 (sigma 54 modulation protein ribosomal protein s30ea [Nannochloropsis gaditana]) HSP 1 Score: 393.7 bits (1010), Expect = 4.800e-106 Identity = 212/275 (77.09%), Postives = 236/275 (85.82%), Query Frame = 0 Query: 1 MQIIKAFLLAAAAATTFLLYAEAFMPLPSATKCANKLSLPVPLRALTATSLQPRIGAITPLWATG--EGSGETAFKIQVTGNNIEVTPAMREYVEKKIGKVLSKLPLHDAVNKVDAHLSVVLLAHAAKHSHTAEVTLFMKGGQVLRASEETDYMYASIDLVSHRITRLLRKFKDRKLGKRKEVNFEEDGEAEMEALSEAMAGA-AGEGGFQDPAKGVDMKVVKKKQFDMPAMSTADAIVCLDYIGHDFYVYRNEASDEINVVYKRKQGGVGVIEP 273 MQ+ K AAAAATT +L A+AF+PL ATK ++ + LPV L ALT TSLQPR GA+ PL A+G GET +K+QVTG N+EVTPAMR+YVEKK+GKVL K+P+HDA+NKVD HLSVV LAHAAKHSHT E TLFMKGGQVLRASEETDYMYASIDLVSHRITRLLRKFKDRK+GKRKEVNFEEDGE+EME+L AGA GEGGFQDPAKGVDM+VVK+KQFDMPAMSTADAIVCL+YIGHDFYV+RNE S EINVVYKRK GGVGVIEP Sbjct: 69 MQMTKGLWFAAAAATTLILKADAFLPLQPATKYSSHV-LPVHLAALTPTSLQPRTGAMRPLTASGGDGNGGETTYKVQVTG-NVEVTPAMRDYVEKKLGKVLVKMPVHDAINKVDVHLSVVNLAHAAKHSHTVEATLFMKGGQVLRASEETDYMYASIDLVSHRITRLLRKFKDRKIGKRKEVNFEEDGESEMESLGLTGAGAEGGEGGFQDPAKGVDMRVVKRKQFDMPAMSTADAIVCLEYIGHDFYVFRNEDSGEINVVYKRKLGGVGVIEP 341
BLAST of NO20G01720 vs. NCBI_GenBank
Match: XP_005854360.1 (sigma 54 modulation protein ribosomal protein s30ea [Nannochloropsis gaditana CCMP526] >EKU22000.1 sigma 54 modulation protein ribosomal protein s30ea [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 259.2 bits (661), Expect = 1.400e-65 Identity = 142/192 (73.96%), Postives = 162/192 (84.38%), Query Frame = 0 Query: 1 MQIIKAFLLAAAAATTFLLYAEAFMPLPSATKCANKLSLPVPLRALTATSLQPRIGAITPLWATG--EGSGETAFKIQVTGNNIEVTPAMREYVEKKIGKVLSKLPLHDAVNKVDAHLSVVLLAHAAKHSHTAEVTLFMKGGQVLRASEETDYMYASIDLVSHRITRLLRKFKDRKLGKRKEVNFEEDGEAE 191 MQ+ K AAAAATT +L A+AF+PL ATK ++ + LPV L ALT TSLQPR GA+ PL A+G GET +K+QVTG N+EVTPAMR+YVEKK+GKVL K+P+HDA+NKVD HLSVV LAHAAKHSHT E TLFMKGGQVLRASEETDYMYASIDLVSHRITRLLRKFKDRK+GKRKEVNFEEDGE++ Sbjct: 1 MQMTKGLWFAAAAATTLILKADAFLPLQPATKYSSHV-LPVHLAALTPTSLQPRTGAMRPLTASGGDGNGGETTYKVQVTG-NVEVTPAMRDYVEKKLGKVLVKMPVHDAINKVDVHLSVVNLAHAAKHSHTVEATLFMKGGQVLRASEETDYMYASIDLVSHRITRLLRKFKDRKIGKRKEVNFEEDGESD 190
BLAST of NO20G01720 vs. NCBI_GenBank
Match: CBN78984.1 (ribosomal protein rpS22, plastidal [Ectocarpus siliculosus]) HSP 1 Score: 172.2 bits (435), Expect = 2.300e-39 Identity = 109/227 (48.02%), Postives = 145/227 (63.88%), Query Frame = 0 Query: 53 PRIGAITPLWATGEGSGETAFKIQVTGNNIEVTPAMREYVEKKIGKVLSKLPLHDAVNKVDAHLSVVLLAHAAKHSHTAEVTLFMKGGQVLRASEETDYMYASIDLVSHRITRLLRKFKDRKL-GKRKEVNF----EEDGEAEMEALSEAMAGAAGEGGFQDP--AKGVDMKVVKKKQFDMPAMSTADAIVCLDYIGHDFYVYRNEASDEINVVYKRKQGGVGVIEP 273 PR + PL A + A I VTGNN+EVT ++EYVEKK+ KVL K + +V+KVD HLS V + +H EVT+F K V+RA++ +D MYAS+D V+ RI R LR+FK+RK+ G R E+ E +M+A A A AA E F+D + M VVK K F MPA+S +A+ CL+YIGHDFY++RNE ++E+NVVYKRK GGVG+IEP Sbjct: 47 PRRSNLVPLQAVAGATSRRA-PIIVTGNNVEVTEPLKEYVEKKMAKVLDK--VGSSVSKVDVHLS-VNKNPSVSDNHNTEVTVFSK-NHVIRATDNSDNMYASVDQVTDRIQRKLRRFKERKVAGMRGRSGVGGLSEKTAEKDMDA---AAAEAADEDPFEDKYGDEPEAMAVVKTKSFPMPAISLEEAVTCLEYIGHDFYLFRNEETNEVNVVYKRKSGGVGLIEP 265
BLAST of NO20G01720 vs. NCBI_GenBank
Match: XP_005538163.1 (probable plastid-specific ribosomal protein PSRP-1 precursor [Cyanidioschyzon merolae strain 10D] >BAM82127.1 probable plastid-specific ribosomal protein PSRP-1 precursor [Cyanidioschyzon merolae strain 10D]) HSP 1 Score: 137.9 bits (346), Expect = 4.800e-29 Identity = 93/239 (38.91%), Postives = 131/239 (54.81%), Query Frame = 0 Query: 68 SGETAFKIQVTGNNIEVTPAMREYVEKKIGKVLSKLPLHDAVNKVDAHLSVVLLAH--AAKHSHTAEVTLFMKGGQVLRASEETDYMYASIDLVSHRITRLLRKFKDR-----KLGKRKEVNFEEDGEAEMEALS---EAMAGAAG------------------------EGGFQDPAKGVDMKVVKKKQFDMPAMSTADAIVCLDYIGHDFYVYRNEASDEINVVYKRKQGGVGVIEP 273 S T I VTG+NI++T A+RE+V KIG V+ K P V +V+ HLSV AH K++H EVT + + G+VLRAS + + MYA+IDL + ++ R LRK+K+R EV ED + S E+M G A E ++ +VV+KK+F MP + +A++CLDYI HDFYV+RN + E+NVVY+R+ GGVG+IEP Sbjct: 63 SAPTTTPITVTGDNIDLTSALREHVLDKIGHVVEKFP--GLVTRVEVHLSV---AHNPRIKNAHDCEVTAYAR-GRVLRASVKMENMYAAIDLTADKLKRTLRKYKERLHEHSPTADLVEVALLEDRRTRASSPSAPVESMDGLASVPATSPVPVDDGAPYEGSKHRREVESELEEMGIEPSREVVRKKRFPMPLQTVEEAVLCLDYIDHDFYVFRNADTGEVNVVYRRRHGGVGLIEP 295
BLAST of NO20G01720 vs. NCBI_GenBank
Match: XP_005832168.1 (hypothetical protein GUITHDRAFT_108830 [Guillardia theta CCMP2712] >EKX45188.1 hypothetical protein GUITHDRAFT_108830 [Guillardia theta CCMP2712]) HSP 1 Score: 137.1 bits (344), Expect = 8.100e-29 Identity = 82/210 (39.05%), Postives = 127/210 (60.48%), Query Frame = 0 Query: 68 SGETAFKIQVTGNNIEVTPAMREYVEKKIGKVLSKLPLHDAVNKVDAHLSVVLLAHAAKHSHTAEVTLFMKGGQVLRASEETDYMYASIDLVSHRITRLLRKFKDR-----KLGKRKEVNFEEDGEAEMEALSEAMAGAAGEGGFQDPAKGVDMKVVKKKQFDMPAMSTADAIVCLDYIGHDFYVYRNEASDEINVVYKRKQGGVGVIEP 273 S I ++GNN+E+TPA+++Y+ +K+ LSK + V + DAHL+V + +++ EV + +K G V+RAS+ T MYASID V+ + R LRK+K+R + GK + + F+E+ + ++ +A P DM ++KKK F M +S DA++CLDYI HDFYV++N+ + +I VVYKR GGVG+IEP Sbjct: 2 SSAVKIPITISGNNVELTPALKQYINEKLTNTLSK--VGRLVTRCDAHLTVD-KNPSVENNANFEVVVSVK-GTVMRASKSTHDMYASIDAVADSVKRKLRKYKERIIDAHRQGKPEAMGFDEEEIQGFKDFTQEVAKMEN----SLPVPPADMSLMKKKTFPMEPISVEDAVLCLDYIEHDFYVFKNKENGKIAVVYKRNHGGVGLIEP 203
BLAST of NO20G01720 vs. NCBI_GenBank
Match: WP_096645900.1 (ribosome-associated translation inhibitor RaiA [Calothrix brevissima] >BAY64726.1 SSU ribosomal protein S30P / sigma 54 modulation protein [Calothrix brevissima NIES-22]) HSP 1 Score: 136.3 bits (342), Expect = 1.400e-28 Identity = 78/199 (39.20%), Postives = 118/199 (59.30%), Query Frame = 0 Query: 74 KIQVTGNNIEVTPAMREYVEKKIGKVLSKLPLHDAVNKVDAHLSVVLLAHAAKHSHTAEVTLFMKGGQVLRASEETDYMYASIDLVSHRITRLLRKFKDRKLGKRKEVNFEEDGEAEMEALSEAMAGAAGEGGFQDPAKGVDMKVVKKKQFDMPAMSTADAIVCLDYIGHDFYVYRNEASDEINVVYKRKQGGVGVIEP 273 K+ + G NIE+T A+R+YV +KI K ++ + N+VD HLSV A + AEVT++ G V+RA E ++ +YASIDLV+ +I R LRK+K+RK K+ + E ++E + G D + +VV+ K F MP M+ A+A+ L +GHDFY++ N ++EINV+Y+R GG GVI+P Sbjct: 2 KLVIHGKNIEITDAIRDYVHQKIEKAVNH--FQNITNEVDVHLSVARNPRIASNKQAAEVTIY-ANGNVIRAEESSENLYASIDLVADKIARQLRKYKERKQDKKTQPTNE-------VVVAEPVVGDL----IGDRTPELPSEVVRTKYFSMPPMTVAEALEQLQLVGHDFYMFLNSDTNEINVIYERNHGGYGVIQP 186
BLAST of NO20G01720 vs. NCBI_GenBank
Match: WP_102185727.1 (ribosome-associated translation inhibitor RaiA [Fischerella thermalis] >PMB46691.1 ribosomal subunit interface protein [Fischerella thermalis CCMEE 5205]) HSP 1 Score: 136.3 bits (342), Expect = 1.400e-28 Identity = 78/199 (39.20%), Postives = 117/199 (58.79%), Query Frame = 0 Query: 74 KIQVTGNNIEVTPAMREYVEKKIGKVLSKLPLHDAVNKVDAHLSVVLLAHAAKHSHTAEVTLFMKGGQVLRASEETDYMYASIDLVSHRITRLLRKFKDRKLGKRKEVNFEEDGEAEMEALSEAMAGAAGEGGFQDPAKGVDMKVVKKKQFDMPAMSTADAIVCLDYIGHDFYVYRNEASDEINVVYKRKQGGVGVIEP 273 K+ + G NIE+T A+REYV +KI K +S + N+VD HLSV AEVT++ G V+RA E ++ +YASIDLV+ +I R LRK+K+R+ K+ +G + +++ + A E + +VV+ K F MP M+ +A+ L +GHDFY++RN A+ EINV+Y+R GG GVI+P Sbjct: 2 KLVIHGKNIEITDAIREYVHQKIEKAVSH--FQNITNEVDVHLSVARNPR-INPKQAAEVTIY-ANGNVIRAEESSENLYASIDLVADKIARQLRKYKERRHDKKTHAQTSIEGVVQQTVVTDLIGNRAPE---------LPEEVVRTKYFAMPPMTVTEALEQLQLVGHDFYMFRNSATGEINVIYERNHGGYGVIQP 187
BLAST of NO20G01720 vs. NCBI_GenBank
Match: WP_016860753.1 (ribosome-associated translation inhibitor RaiA [Fischerella muscicola]) HSP 1 Score: 136.0 bits (341), Expect = 1.800e-28 Identity = 78/199 (39.20%), Postives = 118/199 (59.30%), Query Frame = 0 Query: 74 KIQVTGNNIEVTPAMREYVEKKIGKVLSKLPLHDAVNKVDAHLSVVLLAHAAKHSHTAEVTLFMKGGQVLRASEETDYMYASIDLVSHRITRLLRKFKDRKLGKRKEVNFEEDGEAEMEALSEAMAGAAGEGGFQDPAKGVDMKVVKKKQFDMPAMSTADAIVCLDYIGHDFYVYRNEASDEINVVYKRKQGGVGVIEP 273 K+ + G NIE+T A+REYV +KI K +S + N+VD HLSV +AEVT++ G V+RA E ++ +YASIDLV+ +I R LRK+K+R+ K+ +G + +++ + D A + +VV+ K F MP M+ A+A+ L +GHDFY++RN + EINV+Y+R GG GVI+P Sbjct: 2 KLVIHGKNIEITDAIREYVHQKIEKAVSH--FQNITNEVDVHLSVARNPR-INPKQSAEVTIY-ANGNVIRAEESSENLYASIDLVADKIARQLRKYKERRHEKKTHAQTTIEGVVQQTVVTDLIG---------DRAPELPEEVVRTKYFAMPPMTVAEALEQLQMVGHDFYMFRNSETGEINVIYERNHGGYGVIQP 187
BLAST of NO20G01720 vs. NCBI_GenBank
Match: WP_089129674.1 (ribosome-associated translation inhibitor RaiA [Tolypothrix sp. NIES-4075] >GAX44030.1 sigma 54 modulation protein/ribosomal protein S30EA [Tolypothrix sp. NIES-4075]) HSP 1 Score: 136.0 bits (341), Expect = 1.800e-28 Identity = 78/201 (38.81%), Postives = 119/201 (59.20%), Query Frame = 0 Query: 74 KIQVTGNNIEVTPAMREYVEKKIGKVLSKLPLHDAVNKVDAHLSVVLLAHAAKHS--HTAEVTLFMKGGQVLRASEETDYMYASIDLVSHRITRLLRKFKDRKLGKRKEVNFEEDGEAEMEALSEAMAGAAGEGGFQDPAKGVDMKVVKKKQFDMPAMSTADAIVCLDYIGHDFYVYRNEASDEINVVYKRKQGGVGVIEP 273 K+ + G NIE+T +REYV +KI K S + N+VD HLSV A +++ +AEVT++ G V+RA E ++ +YASIDLV+ +I R LRK+K+R+ K+ +G + E +++ + D + +VV+ K F MP M+ A+A+ L +GHDFY++ N +DEINV+Y+R GG GVI P Sbjct: 2 KLVIHGKNIEITDGIREYVHQKIEKAASH--FQNLTNEVDVHLSV---ARNPRNNTRQSAEVTIY-ANGSVIRAEESSENLYASIDLVADKIARQLRKYKERRQDKKTNAQITIEGVVQPEVVTDLIG---------DRTPELPSEVVRTKYFSMPPMTVAEALEQLQLVGHDFYMFHNSETDEINVIYERNHGGYGVIHP 187
BLAST of NO20G01720 vs. NCBI_GenBank
Match: WP_026723497.1 (ribosome-associated translation inhibitor RaiA [Fischerella sp. PCC 9431]) HSP 1 Score: 134.8 bits (338), Expect = 4.000e-28 Identity = 77/199 (38.69%), Postives = 117/199 (58.79%), Query Frame = 0 Query: 74 KIQVTGNNIEVTPAMREYVEKKIGKVLSKLPLHDAVNKVDAHLSVVLLAHAAKHSHTAEVTLFMKGGQVLRASEETDYMYASIDLVSHRITRLLRKFKDRKLGKRKEVNFEEDGEAEMEALSEAMAGAAGEGGFQDPAKGVDMKVVKKKQFDMPAMSTADAIVCLDYIGHDFYVYRNEASDEINVVYKRKQGGVGVIEP 273 K+ + G NIE+T A+REYV +KI K +S + N+VD HLSV +AEVT++ G V+RA E ++ +YASIDLV+ +I R LRK+K+R+ K+ +G + +++ + D A + +VV+ K F MP M+ +A+ L +GHDFY++RN + EINV+Y+R GG GVI+P Sbjct: 2 KLVIHGKNIEITDAIREYVHQKIEKAVSH--FQNITNEVDVHLSVARNPR-INPKQSAEVTIY-ANGNVIRAEESSENLYASIDLVADKIARQLRKYKERRHEKKTHAQSTIEGVVQQTVITDLIG---------DRAPELPEEVVRTKYFAMPPMTVTEALEQLQMVGHDFYMFRNSETGEINVIYERNHGGYGVIQP 187 The following BLAST results are available for this feature:
BLAST of NO20G01720 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO20G01720 ID=NO20G01720|Name=NO20G01720|organism=Nannochloropsis oceanica|type=gene|length=4518bpback to top protein sequence of NO20G01720.1 >NO20G01720.1-protein ID=NO20G01720.1-protein|Name=NO20G01720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=275bpback to top protein sequence of NO20G01720.2 >NO20G01720.2-protein ID=NO20G01720.2-protein|Name=NO20G01720.2|organism=Nannochloropsis oceanica|type=polypeptide|length=243bpback to top protein sequence of NO20G01720.3 >NO20G01720.3-protein ID=NO20G01720.3-protein|Name=NO20G01720.3|organism=Nannochloropsis oceanica|type=polypeptide|length=232bpback to top Synonyms
Publications
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