NO20G01690, NO20G01690 (gene) Nannochloropsis oceanica

Overview
NameNO20G01690
Unique NameNO20G01690
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1723
Alignment locationchr20:516148..517870 +

Link to JBrowse

Properties
Property NameValue
DescriptionRibosomal pseudouridine
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:516148..517870 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0009451RNA modification
GO:0001522pseudouridine synthesis
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0009982pseudouridine synthase activity
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR020103PsdUridine_synth_cat_dom
IPR006145PsdUridine_synth_RsuA/RluD
Homology
BLAST of NO20G01690 vs. NCBI_GenBank
Match: EWM22063.1 (ribosomal pseudouridine [Nannochloropsis gaditana])

HSP 1 Score: 551.6 bits (1420), Expect = 2.400e-153
Identity = 271/404 (67.08%), Postives = 316/404 (78.22%), Query Frame = 0
Query:   79 ESLQDLQRIADFFPGTIKDNSTAFFHAPQAYATVPEALTAALHIPLDRAVKLHEVGAVYIHRQMKFRRTRFIENFPPISVKEGDLFRVYLFPRRFPECVTDYSSRVVWEDEDVMIVDKPPGCPCSLHVSNALEALDVVASASLGVPLIRMNRLDVVTTGLVPLAKTAQGATRFWEEIRRDRVGKKYKALLTGPVPVGVLEHYMPGKIIHRRPAPRAISRQPLKGWKVCQTRVLSCTPVSFSDLDVAALLDARKEEAKTEEKEGGAHVSASENKILSIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYEVEAELMTGRTHQLRAVFAAEGSPIWQDTMYSPLTSFLLNDEDDPAIESIYPLCVEPTATTGIALQCAGLTFWGKTIEAGRPWWRKKVAKLEG 483
            +SLQDL+ IA FFPGT KDNSTAFFHA   +ATVPEA+  ALH+  DRA KLHE+GAVYI+RQ KFRRT  IE +PP +V EGDLFRVYLFPRRFPEC+ DY+ RV+WE++D+++VDKPPGCPCSLHVSNALEALDV ASASLG+ LIRMNRLDVVT+GLVPLAKTAQGATRFWEEIRRDR+GK+YKALLTGPVPVG+LEHYMPGKIIHRRPAPRAISR+PL GWK+CQTRVLSC PV+FS+L++ A+ D          ++GG   S  E  +                                   LYEVEAEL+TGRTHQLRAVFAAEGSPIWQD+MY+P+TSFLL DE DPAI+++YPLC+EP A+TGIALQCA L+FW +T+ AG PWWR+K    EG
Sbjct:   98 KSLQDLREIASFFPGTPKDNSTAFFHASCEFATVPEAVATALHMSHDRAAKLHEIGAVYIYRQNKFRRTHLIEKYPPSTVLEGDLFRVYLFPRRFPECMIDYTFRVIWENDDLLLVDKPPGCPCSLHVSNALEALDVAASASLGLNLIRMNRLDVVTSGLVPLAKTAQGATRFWEEIRRDRLGKRYKALLTGPVPVGLLEHYMPGKIIHRRPAPRAISRRPLPGWKLCQTRVLSCQPVAFSELNLVAIHDG---------QDGG---SGGEKDL--------------------------------PPSLYEVEAELVTGRTHQLRAVFAAEGSPIWQDSMYAPMTSFLLEDEKDPAIQALYPLCMEPRASTGIALQCARLSFWEQTVHAGAPWWRRKGVNREG 457          
BLAST of NO20G01690 vs. NCBI_GenBank
Match: XP_005854362.1 (ribosomal pseudouridine [Nannochloropsis gaditana CCMP526] >EKU22002.1 ribosomal pseudouridine [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 416.8 bits (1070), Expect = 9.400e-113
Identity = 196/252 (77.78%), Postives = 226/252 (89.68%), Query Frame = 0
Query:   79 ESLQDLQRIADFFPGTIKDNSTAFFHAPQAYATVPEALTAALHIPLDRAVKLHEVGAVYIHRQMKFRRTRFIENFPPISVKEGDLFRVYLFPRRFPECVTDYSSRVVWEDEDVMIVDKPPGCPCSLHVSNALEALDVVASASLGVPLIRMNRLDVVTTGLVPLAKTAQGATRFWEEIRRDRVGKKYKALLTGPVPVGVLEHYMPGKIIHRRPAPRAISRQPLKGWKVCQTRVLSCTPVSFSDLDVAALLDAR 331
            +SLQDL+ IA FFPGT KDNSTAFFHA   +ATVPEA+  ALH+  DRA KLHE+GAVYI+RQ KFRRT  IE +PP +V EGDLFRVYLFPRRFPEC+ DY+ RV+WE++D+++VDKPPGCPCSLHVSNALEALDV ASASLG+ LIRMNRLDVVT+GLVPLAKTAQGATRFWEEIRRDR+GK+YKALLTGPVPVG+LEHYMPGKIIHRRPAPRAISR+PL GWK+CQTRVLSC PV+FS+L++ A+ D +
Sbjct:   98 KSLQDLREIASFFPGTPKDNSTAFFHASCEFATVPEAVATALHMSHDRAAKLHEIGAVYIYRQNKFRRTHLIEKYPPSTVLEGDLFRVYLFPRRFPECMIDYTFRVIWENDDLLLVDKPPGCPCSLHVSNALEALDVAASASLGLNLIRMNRLDVVTSGLVPLAKTAQGATRFWEEIRRDRLGKRYKALLTGPVPVGLLEHYMPGKIIHRRPAPRAISRRPLPGWKLCQTRVLSCQPVAFSELNLVAIHDGQ 349          
BLAST of NO20G01690 vs. NCBI_GenBank
Match: CEM01712.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 149.1 bits (375), Expect = 3.700e-32
Identity = 128/397 (32.24%), Postives = 175/397 (44.08%), Query Frame = 0
Query:  133 VGAVYIHRQMK--FRRTRFIENFPPISVKEGDLFRVYLFPRRFPECVTDYSSRVVWEDEDVMIVDKPPGCPCSLHVSNALEALDVVASASLGVP-LIRMNRLDVVTTGLVPLAKTAQGATRF--WEEIRR------------------------DRVGKKYKALLTGPVPVGVLEHYM-PGKIIH-RRPAPRAISRQPLKGWKVCQTRVLSCTPV----SFSDLDVAALLDARKEEAKTEEKEGGAHVSASENKILSIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYEVEAELMTGRTHQLRAVFAAEGSPIWQDTMYSPLTSFL---LNDEDDPAIESIYPLCVEPTATTG-----------------IALQCAGLTFWGKTIEAGRPWWR 475
            V A  +  Q+K  +RR R I+    I   E  L RV+L P+R      D+ SRV    E  ++++KP G PC  HVSN  E L   A   L    LI ++RLD+ TTGLV +A+  + A  F  W E R                           + K Y+ L+  P   GV++HYM PG  ++    APR +S  P+ GWK C+  VLSCT V    + S  D +A   + +  A   + E    +S +E ++                                    YE++ EL+TGRTHQLRA FAA G+PI  DTMY+P++ F    L+++D+          V PT T G                 I L  A L   G  IEAG PWWR
Sbjct:  149 VPAATLRAQLKSHYRRNR-IDGAISIKGNERFLIRVHLKPKRQRGVHVDWPSRVRHSCEHFVVLEKPFGLPCQPHVSNYRECLHGAAERGLQEDNLIALHRLDIATTGLVCVARRKKAARHFTRWMEHRSLNGKATHVEEQSADGSAADAERAIGEMRKVYRVLVRKPFDNGVIQHYMPPGPALNLNTQAPRLVSESPIDGWKDCKCVVLSCTDVTDQLTMSASDRSAPPPSDEWPAFAIDAEWDRTISQNEARM---------------------QQRLEGLLQDGASPYYELQVELITGRTHQLRAQFAAMGAPIVGDTMYAPMSGFFVHTLSEKDEQ---------VAPTTTNGPMAAKRLMDTAAEPEIPIGLHAAVLELNGTRIEAGPPWWR 514          
BLAST of NO20G01690 vs. NCBI_GenBank
Match: XP_021719668.1 (RNA pseudouridine synthase 6, chloroplastic-like isoform X2 [Chenopodium quinoa])

HSP 1 Score: 134.0 bits (336), Expect = 1.200e-27
Identity = 106/356 (29.78%), Postives = 156/356 (43.82%), Query Frame = 0
Query:  141 QMKFRRTRFIENFPPISVKEGDLFRVYLFPRRFPECV-TDYSSRVVWEDEDVMIVDKPPGCPCSLHVSNALEALDVVASASLGV--PLIRMNRLDVVTTGLVPLAKTAQGATRFWEEIRRDRVGKKYKALLTGPVPVGVLEHYM-PGKIIHRRPAPRAISRQPLKGWKVCQTRVLSCTPVSFSDLDVAALLDARKEEAKTEEKEGGAHVSASENKILSIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYEVEAELMTGRTHQLRAVFAAEGSPIWQDTMYSPLT-----------------SFLLNDEDDPAIESIYPL-CVEPTATTGIALQCAGLTFWGKTIEAGRPWWR 475
            Q  FR T   EN     V+ G   RVY+ PRRFP C   D+ SR++  D++ +I+DKP G       +N  E+    A+ +LG+  PL+  +++D  T G V +A+T + ++ F E+ R  +V K Y AL+  P+  G++ HYM P K+     APR +S +  KGW++CQ  VL C  V + +  +         E K + K+ G  V                                           YE +  L+TGRTHQ+RA  AA G+P+  D+MY P                    +    E   AIE+   L   EP+   G+           +  EAG PWWR
Sbjct:  125 QKTFRITHVNEN-----VEVGTYLRVYVHPRRFPRCYEIDWKSRIIAIDDNYVILDKPAGTSVGGTSNNIEESCANFATRALGLTSPLLTTHQIDNCTEGCVLMARTEEYSSIFHEKFREKKVKKLYLALVAAPISCGIITHYMQPAKL-----APRIVSEEYDKGWQLCQLEVLDCKEVPWPNSTI---------EEKYQIKDCGWPVKT---------------------------------------FAYECKINLLTGRTHQIRAQLAACGAPLIGDSMYMPAALAELTKPGVSPFGKYKREYSCEGERRIAIENWNSLHGKEPSLAIGLQACQISWDDGEQVYEAGSPWWR 422          
BLAST of NO20G01690 vs. NCBI_GenBank
Match: XP_021719667.1 (RNA pseudouridine synthase 6, chloroplastic-like isoform X1 [Chenopodium quinoa])

HSP 1 Score: 134.0 bits (336), Expect = 1.200e-27
Identity = 106/356 (29.78%), Postives = 156/356 (43.82%), Query Frame = 0
Query:  141 QMKFRRTRFIENFPPISVKEGDLFRVYLFPRRFPECV-TDYSSRVVWEDEDVMIVDKPPGCPCSLHVSNALEALDVVASASLGV--PLIRMNRLDVVTTGLVPLAKTAQGATRFWEEIRRDRVGKKYKALLTGPVPVGVLEHYM-PGKIIHRRPAPRAISRQPLKGWKVCQTRVLSCTPVSFSDLDVAALLDARKEEAKTEEKEGGAHVSASENKILSIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYEVEAELMTGRTHQLRAVFAAEGSPIWQDTMYSPLT-----------------SFLLNDEDDPAIESIYPL-CVEPTATTGIALQCAGLTFWGKTIEAGRPWWR 475
            Q  FR T   EN     V+ G   RVY+ PRRFP C   D+ SR++  D++ +I+DKP G       +N  E+    A+ +LG+  PL+  +++D  T G V +A+T + ++ F E+ R  +V K Y AL+  P+  G++ HYM P K+     APR +S +  KGW++CQ  VL C  V + +  +         E K + K+ G  V                                           YE +  L+TGRTHQ+RA  AA G+P+  D+MY P                    +    E   AIE+   L   EP+   G+           +  EAG PWWR
Sbjct:  171 QKTFRITHVNEN-----VEVGTYLRVYVHPRRFPRCYEIDWKSRIIAIDDNYVILDKPAGTSVGGTSNNIEESCANFATRALGLTSPLLTTHQIDNCTEGCVLMARTEEYSSIFHEKFREKKVKKLYLALVAAPISCGIITHYMQPAKL-----APRIVSEEYDKGWQLCQLEVLDCKEVPWPNSTI---------EEKYQIKDCGWPVKT---------------------------------------FAYECKINLLTGRTHQIRAQLAACGAPLIGDSMYMPAALAELTKPGVSPFGKYKREYSCEGERRIAIENWNSLHGKEPSLAIGLQACQISWDDGEQVYEAGSPWWR 468          
BLAST of NO20G01690 vs. NCBI_GenBank
Match: KMZ73083.1 (RNA pseudouridine synthase 6, chloroplastic [Zostera marina])

HSP 1 Score: 133.3 bits (334), Expect = 2.100e-27
Identity = 108/360 (30.00%), Postives = 156/360 (43.33%), Query Frame = 0
Query:  141 QMKFRRTRFIENFPPISVKEGDLFRVYLFPRRFPECV-TDYSSRVVWEDEDVMIVDKPPGCPCSLHVSNALEALDVVASASLG--VPLIRMNRLDVVTTGLVPLAKTAQGATRFWEEIRRDRVGKKYKALLTGPVPVGVLEHYMPGKIIHRRP---APRAISRQPLKGWKVCQTRVLSCTPVSFSDLDVAALLDARKEEAKTEEKEGGAHVSASENKILSIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYEVEAELMTGRTHQLRAVFAAEGSPIWQDTMYSPL------------------TSFLLNDEDDPAIES-IYPLCVEPTATTGIALQCAGLTFWGKTIEAGRPWWRK 476
            Q  FR T+  E     SV+ G   RV++ P+RFP C   D+ SRV+  DE  +++DKP G        N  E+     S +LG  VPL   +++D  T G V LAKT    + F + IR  +V K Y AL   PVP G+L HYM       RP   AP+ +S+  + GW +C+  VLSC  + + D +V         E K   ++ G   S                                          YE E +L+TG+THQ+RA  AA G+PI  D+MY P                   T F   D+   A+ + +     EP    G  LQ + ++++ +   A  PWW++
Sbjct:  165 QKTFRITQVDE-----SVEAGMYLRVHVHPKRFPRCYEIDWKSRVLSVDELYVVLDKPAGISVGGTTDNIEESCVTFTSRALGLTVPLKTTHQIDNCTDGCVVLAKTKDFCSTFHKLIREKKVKKMYLALTAAPVPTGILSHYM-------RPVNFAPKIVSKDCISGWHLCELEVLSCKEIPWPDAEV---------EEKYHIEDCGWDGSKK--------------------------------------VAYECEIDLLTGKTHQIRAQLAAIGAPIIGDSMYMPAVIAERENPCLNPFGQGKKTEFSNEDDRTKAVGNWLSKYGKEPHVAIG--LQASLISWFDRVYYARTPWWKQ 463          
BLAST of NO20G01690 vs. NCBI_GenBank
Match: XP_021766917.1 (RNA pseudouridine synthase 6, chloroplastic-like isoform X1 [Chenopodium quinoa])

HSP 1 Score: 132.9 bits (333), Expect = 2.700e-27
Identity = 106/363 (29.20%), Postives = 157/363 (43.25%), Query Frame = 0
Query:  134 GAVYIHRQMKFRRTRFIENFPPISVKEGDLFRVYLFPRRFPECV-TDYSSRVVWEDEDVMIVDKPPGCPCSLHVSNALEALDVVASASLGV--PLIRMNRLDVVTTGLVPLAKTAQGATRFWEEIRRDRVGKKYKALLTGPVPVGVLEHYM-PGKIIHRRPAPRAISRQPLKGWKVCQTRVLSCTPVSFSDLDVAALLDARKEEAKTEEKEGGAHVSASENKILSIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYEVEAELMTGRTHQLRAVFAAEGSPIWQDTMYSPLT-----------------SFLLNDEDDPAIESIYPL-CVEPTATTGIALQCAGLTFWGKTIEAGRPWWR 475
            G      Q  FR T   E+     V+ G   RVY+ PRRFP C   D+ SR++   ++ +I+DKP G       +N  E+    A+ +LG+  PL+  +++D  T G V +A+T + ++ F E+ R  +V K Y AL+  P+  G++ HYM P K+     APR +S +  KGW++CQ  VL C  VS+ +  +         E K + K+ G  V                                           YE +  L+TGRTHQ+RA  AA G+P+  D+MY P                    +   DE   A E+   L   EP+   G+           +  EAG PWWR
Sbjct:  164 GKTVSEAQKTFRITHVNEH-----VEVGTYLRVYVHPRRFPRCYEIDWKSRIIAITDNYVILDKPAGTSVGGTSNNIEESCANFATRALGLTSPLLTTHQIDNCTEGCVVMARTEEYSSIFHEKFREKKVKKIYLALVAAPISCGIITHYMQPAKL-----APRIVSEEYEKGWQLCQLEVLDCKEVSWPNSTI---------EEKYQIKDCGWLVKT---------------------------------------FAYECKINLLTGRTHQIRAQLAACGAPLIGDSMYMPAALAELTKPGVSPFGKYKREYSCEDERRIATENWISLHGKEPSLAIGLQACQISWDNGEQVYEAGSPWWR 468          
BLAST of NO20G01690 vs. NCBI_GenBank
Match: XP_008800212.1 (PREDICTED: RNA pseudouridine synthase 6, chloroplastic [Phoenix dactylifera])

HSP 1 Score: 132.5 bits (332), Expect = 3.500e-27
Identity = 105/343 (30.61%), Postives = 150/343 (43.73%), Query Frame = 0
Query:  158 VKEGDLFRVYLFPRRFPECV-TDYSSRVVWEDEDVMIVDKPPGCPCSLHVSNALEALDVVASASLGV--PLIRMNRLDVVTTGLVPLAKTAQGATRFWEEIRRDRVGKKYKALLTGPVPVGVLEHYMPGKIIHRRP---APRAISRQPLKGWKVCQTRVLSCTPVSFSDLDVAALLDARKEEAKTEEKEGGAHVSASENKILSIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYEVEAELMTGRTHQLRAVFAAEGSPIWQDTMYSPLTS-----------------FLLNDEDDPAIES-IYPLCVEPTATTGIALQCAGLTFWGK--TIEAGRPWWR 475
            V+ G   RV++ P+RFP C   D+ SR++   +  +++DKP          N  E     AS +LG+  PL   +++D  T G V LA+T    + F   IR  +V K Y AL   PVPVG++ HYM       RP   APR +S + + GW +CQ  VL C  V + ++DV              EK  G       +K ++                                  YE +  L+TG+THQ+RA  AA G+PI  D+MY P  +                 F   D+   AIE  I     EP+A  G  LQ + +++ G   + EAG PWWR
Sbjct:  194 VEAGTYLRVHVHPKRFPRCYEIDWKSRIITVTDSYVVLDKPAATSVGGTTDNTEECCATFASRALGLETPLKTTHQIDNCTEGCVVLARTKDFCSIFHGMIREKQVKKFYLALAAAPVPVGIISHYM-------RPVNVAPRLVSEESIGGWHLCQLEVLECKEVPWPNVDV--------------EKSYGIEDCGWPSKDIA----------------------------------YECKINLLTGKTHQVRAQLAAIGAPIVGDSMYMPAAAAEMCNTQINPFGRNRKQFTSEDDRILAIEEWIAQHGKEPSAAIG--LQASHISWDGGKCSYEAGAPWWR 479          
BLAST of NO20G01690 vs. NCBI_GenBank
Match: XP_024454740.1 (RNA pseudouridine synthase 6, chloroplastic [Populus trichocarpa] >XP_002304926.3 RNA pseudouridine synthase 6, chloroplastic [Populus trichocarpa] >PNT39135.1 hypothetical protein POPTR_004G019100v3 [Populus trichocarpa] >PNT39136.1 hypothetical protein POPTR_004G019100v3 [Populus trichocarpa] >PNT39137.1 hypothetical protein POPTR_004G019100v3 [Populus trichocarpa] >PNT39138.1 hypothetical protein POPTR_004G019100v3 [Populus trichocarpa])

HSP 1 Score: 131.7 bits (330), Expect = 6.000e-27
Identity = 105/346 (30.35%), Postives = 147/346 (42.49%), Query Frame = 0
Query:  158 VKEGDLFRVYLFPRRFPECV-TDYSSRVVWEDEDVMIVDKPPGCPCSLHVSNALEALDVVASASLGV--PLIRMNRLDVVTTGLVPLAKTAQGATRFWEEIRRDRVGKKYKALLTGPVPVGVLEHYMPGKIIHRRP---APRAISRQPLKGWKVCQTRVLSCTPVSFSDLDVAALLDARKEEAKTEEKEGGAHVSASENKILSIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYEVEAELMTGRTHQLRAVFAAEGSPIWQDTMYSPLTSFLL---------------NDEDDPAIE-SIYPLCVEPTATTGIALQCAGLTFW--GKTI-EAGRPWWRKKVA 479
            ++ G   RV++ P+RFP C   D+ SR++   E  +++DKP G        N  E+    A+ +LG+  PL   +++D  T G V LA+T +  + F  +IR   V K Y AL   PVP+GV+ HYM       RP   APR +S + +KGW +CQ  V+ C  V + D             A  EEK                                                 YE +  L+TGRTHQ+RA  AA G+P+  D+MY P     +                 EDD AI    + LC        I LQ   ++ W  GK I  AG PWWR ++A
Sbjct:  181 LEAGMYLRVHVHPKRFPRCYDIDWKSRIIHVTESFVVLDKPAGTSVGGTTDNIEESCATFATRALGLTAPLRTTHQIDNCTEGCVVLARTREDCSVFHGKIREKTVKKLYIALAASPVPIGVVNHYM-------RPINMAPRLVSEEFIKGWHLCQLEVMECKRVPWPD-------------AVMEEK-----------------------------------YCVQDCGWPSKDHAYECKINLLTGRTHQIRAQLAALGAPLVGDSMYMPAAVAEMVSPGCNPFGKYKKQYTSEDDKAIAVEEWVLCHGKEPNVAIGLQACQIS-WDDGKHIYNAGSPWWRCRMA 470          
BLAST of NO20G01690 vs. NCBI_GenBank
Match: XP_006468002.1 (PREDICTED: RNA pseudouridine synthase 6, chloroplastic isoform X1 [Citrus sinensis] >XP_006468003.1 PREDICTED: RNA pseudouridine synthase 6, chloroplastic isoform X1 [Citrus sinensis])

HSP 1 Score: 130.6 bits (327), Expect = 1.300e-26
Identity = 106/350 (30.29%), Postives = 149/350 (42.57%), Query Frame = 0
Query:  158 VKEGDLFRVYLFPRRFPECV-TDYSSRVVWEDEDVMIVDKPPGCPCSLHVSNALEALDVVASASLGV--PLIRMNRLDVVTTGLVPLAKTAQGATRFWEEIRRDRVGKKYKALLTGPVPVGVLEHYMPGKIIHRRP---APRAISRQPLKGWKVCQTRVLSCTPVSFSDLDVAALLDARKEEAKTEEKEGGAHVSASENKILSIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYEVEAELMTGRTHQLRAVFAAEGSPIWQDTMYSP-----LTSFLLN-------------DEDDPAIESIYPLCVEPTATTGIALQCAGLTFWGKTIEAGRPWWRKKVAKLEGV 484
            V+ G   RV++ P+RFP C   D++SR++   E  +++DKP G        N  E+    AS +LG+  PL   +++D  T G V LA+T +  + F  +IR  +V K Y AL T P+PVG++ HYM       RP   APR +S   + GW +CQ  V+ C  V + D                          A+  K  SI                                 YE + +L+TGRTHQ+RA  AA G+PI  D+MY P     L+S  LN             D++   IE I    +EP+   G+              EA  PWWR K     GV
Sbjct:  193 VEAGTYLRVHVHPKRFPRCYDIDWNSRIIAVTESHVVLDKPAGTSVGGTTDNIEESCATFASRALGLTTPLRTTHQIDNCTEGCVVLARTQEYCSIFHRKIREKKVKKLYLALTTAPLPVGIMTHYM-------RPINIAPRLVSEDFITGWYLCQLEVMECKKVPWPD--------------------------ATVGKAYSI----------------------EDCGWPSRDYAYECKIKLLTGRTHQVRAQLAACGAPIVGDSMYMPAAIAQLSSPGLNPFGKCQKEYASDDDKEMAVIEWISQHGMEPSVAIGLQACHISWDDGECCYEARSPWWRCKCNVGSGV 487          
The following BLAST results are available for this feature:
BLAST of NO20G01690 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22063.12.400e-15367.08ribosomal pseudouridine [Nannochloropsis gaditana][more]
XP_005854362.19.400e-11377.78ribosomal pseudouridine [Nannochloropsis gaditana ... [more]
CEM01712.13.700e-3232.24unnamed protein product [Vitrella brassicaformis C... [more]
XP_021719668.11.200e-2729.78RNA pseudouridine synthase 6, chloroplastic-like i... [more]
XP_021719667.11.200e-2729.78RNA pseudouridine synthase 6, chloroplastic-like i... [more]
KMZ73083.12.100e-2730.00RNA pseudouridine synthase 6, chloroplastic [Zoste... [more]
XP_021766917.12.700e-2729.20RNA pseudouridine synthase 6, chloroplastic-like i... [more]
XP_008800212.13.500e-2730.61PREDICTED: RNA pseudouridine synthase 6, chloropla... [more]
XP_024454740.16.000e-2730.35RNA pseudouridine synthase 6, chloroplastic [Popul... [more]
XP_006468002.11.300e-2630.29PREDICTED: RNA pseudouridine synthase 6, chloropla... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL023nonsL023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002703NSK002703Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G01690.1NO20G01690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594846gene_6387Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100244g6gene8368Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G01690.1NO20G01690.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G01690 ID=NO20G01690|Name=NO20G01690|organism=Nannochloropsis oceanica|type=gene|length=1723bp
ATGATTATGACCACAAGCACGGTCGCAGCTACTACTATGCGGCGGCAAGT
TGCTGCCTTTACGCGAGTGCCGGCAAGCAGAAAGCACCACTTTTCGAATG
GTTCACCAGCACCACCAACGTCCATCCTCCAGTCTCTATTCTTCTGTCCT
CCCCGTCGCGCCCTCTGCTCGGCTCCCTCCGGCGCCACCACTACCATTCC
CCCCAAGCCAGCAGCAGCCATGAAACACTCAAGAGAATCCTTACAAGACC
TACAACGAATTGCTGACTTTTTCCCTGGTACCATCAAGGACAACAGTACC
GCCTTTTTCCACGCGCCTCAGGCATATGCTACCGTCCCCGAGGCTTTGAC
TGCCGCCCTGCACATCCCACTCGACCGCGCCGTGAAGCTCCACGAGGTCG
GTGCTGTATACATACACCGTCAAATGAAATTTAGACGCACACGTTTCATC
GAAAATTTCCCTCCAATTTCTGTGAAAGAAGGAGATTTGTTTCGTGTGTA
TCTTTTCCCGCGGCGGTTCCCGGAATGTGTGACTGATTACAGCTCGCGGG
TTGTGTGGGAGGATGAGGATGTGATGATTGTTGATAAGCCGCCTGGGTGT
CCTTGTTCTTTGCATGTATCAAATGCATTGGAGGCACTGGATGTAGTGGC
GTCAGCGAGTTTGGGGGTGCCTCTAATAAGgtaggtagtttgcccaggag
gagtgcgatggacgggtaaaccaaagggctttcgtttttgtttttgcttt
tttttaaatctcctcttgtttgtgtccatcaaggagaattgcccttactc
aagcgctatctttccaccccattctgtatagAATGAACCGGCTCGACGTC
GTCACGACCGGCCTGGTCCCGTTGGCCAAGACTGCTCAAGGGGCCACCCG
TTTTTGGGAGGAAATCAGACGAGACCGCGTGGGGAAGAAATACAAAGCAC
TACTGACGGGTCCTGTACCTGTGGGTGTGTTGGAGCACTACATGCCAGgt
aagtcatgtattgtttgtctcgtattggtacctctcgagagtttgcccac
tcaccacgcactcgcctgcgattttttatttgcccgtttccctctttcac
cgctatctaaagGGAAAATCATCCACCGCCGACCCGCGCCTCGTGCCATA
AGCCGGCAGCCACTCAAAGGGTGGAAGGTGTGTCAAACCCGCGTCTTGTC
CTGCACTCCCGTGTCATTCTCTGACTTGGATGTAGCTGCCCTTCTTGACG
CCCGTAAGGAGGAGGCAAAGACGGAAGAGAAAGAGGGAGGGGCTCATGTT
TCCGCCTCGGAGAACAAAATTCTGAGCATTCTCTCTTCCTTCAAAACTTC
CTCCACCGCTTCCTCTGCCTATACCTCCTTCGCTTCCTCTTCCTCAGCTT
CCTTCTCCTCCTCCACCTCCTCTGCCCTCTACGAAGTGGAAGCCGAGCTA
ATGACAGGCCGCACTCACCAGCTCCGCGCTGTGTTCGCGGCAGAGGGCAG
TCCTATCTGGCAAGATACGATGTATTCCCCCCTAACGTCCTTTCTGCTAA
ACGATGAGGACGACCCGGCGATCGAGTCTATATACCCTTTGTGCGTGGAG
CCCACGGCGACGACGGGCATCGCGTTGCAGTGCGCGGGATTGACTTTTTG
GGGGAAGACGATCGAGGCAGGACGTCCCTGGTGGAGAAAGAAGGTAGCCA
AATTGGAAGGGGTTATGGAGTAG
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protein sequence of NO20G01690.1

>NO20G01690.1-protein ID=NO20G01690.1-protein|Name=NO20G01690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=486bp
MIMTTSTVAATTMRRQVAAFTRVPASRKHHFSNGSPAPPTSILQSLFFCP
PRRALCSAPSGATTTIPPKPAAAMKHSRESLQDLQRIADFFPGTIKDNST
AFFHAPQAYATVPEALTAALHIPLDRAVKLHEVGAVYIHRQMKFRRTRFI
ENFPPISVKEGDLFRVYLFPRRFPECVTDYSSRVVWEDEDVMIVDKPPGC
PCSLHVSNALEALDVVASASLGVPLIRMNRLDVVTTGLVPLAKTAQGATR
FWEEIRRDRVGKKYKALLTGPVPVGVLEHYMPGKIIHRRPAPRAISRQPL
KGWKVCQTRVLSCTPVSFSDLDVAALLDARKEEAKTEEKEGGAHVSASEN
KILSILSSFKTSSTASSAYTSFASSSSASFSSSTSSALYEVEAELMTGRT
HQLRAVFAAEGSPIWQDTMYSPLTSFLLNDEDDPAIESIYPLCVEPTATT
GIALQCAGLTFWGKTIEAGRPWWRKKVAKLEGVME*
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Synonyms
Publications