NO20G01590, NO20G01590 (gene) Nannochloropsis oceanica

Overview
NameNO20G01590
Unique NameNO20G01590
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length567
Alignment locationchr20:486545..487111 +

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Properties
Property NameValue
DescriptionAlba DNA/RNA-binding protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:486545..487111 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR036882Alba-like_dom_sf
IPR002775DNA/RNA-bd_Alba-like
Homology
[Close]
BLAST of NO20G01590 vs. NCBI_GenBank
Match: XP_024361551.1 (ribonuclease P protein subunit p25-like [Physcomitrella patens] >XP_024361552.1 ribonuclease P protein subunit p25-like [Physcomitrella patens] >XP_024361553.1 ribonuclease P protein subunit p25-like [Physcomitrella patens] >XP_024361554.1 ribonuclease P protein subunit p25-like [Physcomitrella patens] >XP_024361555.1 ribonuclease P protein subunit p25-like [Physcomitrella patens] >XP_024361556.1 ribonuclease P protein subunit p25-like [Physcomitrella patens] >PNR29110.1 hypothetical protein PHYPA_027802 [Physcomitrella patens])

HSP 1 Score: 112.5 bits (280), Expect = 1.300e-21
Identity = 50/104 (48.08%), Postives = 75/104 (72.12%), Query Frame = 0 
Query:   40 KYRLLACHRDDAPAKTNEVRVTYQGPVKSYLGYAMALFEERGARAVALKGMGRAIHKALTVAEILKRSLPGLHQRTEIGSLPFKEVWAPLEEGLNRVESTRYIS 144
            +Y+ +   R + P   NE+R+T QG +++Y+ YA  L +++GA A+ LK MGRAI+KA+T+AEI+KR + GLHQ T IGS    ++W PLEEGL  +E+TR++S
Sbjct:    3 RYQRVEKPRPEIPISENEIRITTQGKMRNYITYATTLLQDKGASAIVLKAMGRAINKAVTIAEIIKRRIAGLHQNTSIGSTDITDLWEPLEEGLLPLETTRHVS 106
[Close]
BLAST of NO20G01590 vs. NCBI_GenBank
Match: ABR18130.1 (unknown [Picea sitchensis])

HSP 1 Score: 112.1 bits (279), Expect = 1.600e-21
Identity = 52/104 (50.00%), Postives = 71/104 (68.27%), Query Frame = 0 
Query:   40 KYRLLACHRDDAPAKTNEVRVTYQGPVKSYLGYAMALFEERGARAVALKGMGRAIHKALTVAEILKRSLPGLHQRTEIGSLPFKEVWAPLEEGLNRVESTRYIS 144
            +Y+ +   R D P   NE+R+T QG  ++Y+ YAM L  E+GA  + LK MGRAI K +T+AEI+KR +PGLHQ TEI S     +W PLEEGL  +E+TR++S
Sbjct:    3 RYQRVEKPRPDVPISENEIRITTQGMPRNYITYAMTLLREKGASDIILKAMGRAISKTVTIAEIIKRRIPGLHQNTEISSADINYMWEPLEEGLLPLETTRHVS 106
[Close]
BLAST of NO20G01590 vs. NCBI_GenBank
Match: GAQ88218.1 (hypothetical protein KFL_004100060 [Klebsormidium nitens])

HSP 1 Score: 112.1 bits (279), Expect = 1.600e-21
Identity = 49/104 (47.12%), Postives = 74/104 (71.15%), Query Frame = 0 
Query:   40 KYRLLACHRDDAPAKTNEVRVTYQGPVKSYLGYAMALFEERGARAVALKGMGRAIHKALTVAEILKRSLPGLHQRTEIGSLPFKEVWAPLEEGLNRVESTRYIS 144
            +Y+ +   R + P K NE+R+T QG +++Y+ Y++ + +E+GA  + LK MGRAI+K +T+AEILKR + GLHQ T IGS    + W PLEEGL  +E+TR++S
Sbjct:    3 RYQRVEKPRVEEPIKENEIRITTQGKLRNYITYSLTMLQEKGASEIVLKAMGRAINKTVTIAEILKRRIVGLHQNTAIGSTDITDTWQPLEEGLQPIETTRHVS 106
[Close]
BLAST of NO20G01590 vs. NCBI_GenBank
Match: XP_011003072.1 (PREDICTED: ribonuclease P protein subunit p25-like protein [Populus euphratica] >XP_011003073.1 PREDICTED: ribonuclease P protein subunit p25-like protein [Populus euphratica] >XP_011003074.1 PREDICTED: ribonuclease P protein subunit p25-like protein [Populus euphratica])

HSP 1 Score: 110.5 bits (275), Expect = 4.800e-21
Identity = 49/104 (47.12%), Postives = 73/104 (70.19%), Query Frame = 0 
Query:   40 KYRLLACHRDDAPAKTNEVRVTYQGPVKSYLGYAMALFEERGARAVALKGMGRAIHKALTVAEILKRSLPGLHQRTEIGSLPFKEVWAPLEEGLNRVESTRYIS 144
            +Y+ +   R DAP   NE+R+T QG ++SY+ YAM+L +E+G+  +  K MGRAI+K +T+ E++KR + GLHQ T IGS    + W PLEEGL  +E+TR++S
Sbjct:    3 RYQRVEKPRADAPIDENEIRITSQGRMRSYISYAMSLLQEKGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQITSIGSTDITDTWEPLEEGLLPLETTRHVS 106
[Close]
BLAST of NO20G01590 vs. NCBI_GenBank
Match: XP_010061099.1 (PREDICTED: ribonuclease P protein subunit p25-like protein isoform X1 [Eucalyptus grandis] >XP_010061100.1 PREDICTED: ribonuclease P protein subunit p25-like protein isoform X1 [Eucalyptus grandis] >XP_010061101.1 PREDICTED: ribonuclease P protein subunit p25-like protein isoform X1 [Eucalyptus grandis] >XP_018732276.1 PREDICTED: ribonuclease P protein subunit p25-like protein isoform X1 [Eucalyptus grandis] >KCW67995.1 hypothetical protein EUGRSUZ_F01689 [Eucalyptus grandis] >KCW67996.1 hypothetical protein EUGRSUZ_F01689 [Eucalyptus grandis] >KCW67997.1 hypothetical protein EUGRSUZ_F01689 [Eucalyptus grandis])

HSP 1 Score: 110.2 bits (274), Expect = 6.200e-21
Identity = 47/104 (45.19%), Postives = 74/104 (71.15%), Query Frame = 0 
Query:   40 KYRLLACHRDDAPAKTNEVRVTYQGPVKSYLGYAMALFEERGARAVALKGMGRAIHKALTVAEILKRSLPGLHQRTEIGSLPFKEVWAPLEEGLNRVESTRYIS 144
            +Y+ +   R++ P   NE+R+T QG ++SY+ YAM L +E+G++ +  K MGRAI+K +T+ E++KR + GLHQ T IGS+   + W PLEEGL  +E+TR++S
Sbjct:    3 RYQRVEKPREETPIDENEIRITSQGRMRSYITYAMTLLQEKGSKEIVFKAMGRAINKTVTIVELIKRRIVGLHQVTSIGSIDITDTWEPLEEGLVTLETTRHVS 106
[Close]
BLAST of NO20G01590 vs. NCBI_GenBank
Match: XP_018732277.1 (PREDICTED: ribonuclease P protein subunit p25-like protein isoform X2 [Eucalyptus grandis])

HSP 1 Score: 110.2 bits (274), Expect = 6.200e-21
Identity = 47/104 (45.19%), Postives = 74/104 (71.15%), Query Frame = 0 
Query:   40 KYRLLACHRDDAPAKTNEVRVTYQGPVKSYLGYAMALFEERGARAVALKGMGRAIHKALTVAEILKRSLPGLHQRTEIGSLPFKEVWAPLEEGLNRVESTRYIS 144
            +Y+ +   R++ P   NE+R+T QG ++SY+ YAM L +E+G++ +  K MGRAI+K +T+ E++KR + GLHQ T IGS+   + W PLEEGL  +E+TR++S
Sbjct:    3 RYQRVEKPREETPIDENEIRITSQGRMRSYITYAMTLLQEKGSKEIVFKAMGRAINKTVTIVELIKRRIVGLHQVTSIGSIDITDTWEPLEEGLVTLETTRHVS 106
[Close]
BLAST of NO20G01590 vs. NCBI_GenBank
Match: XP_024358400.1 (ribonuclease P protein subunit p25-like protein [Physcomitrella patens] >XP_024358401.1 ribonuclease P protein subunit p25-like protein [Physcomitrella patens] >XP_024358402.1 ribonuclease P protein subunit p25-like protein [Physcomitrella patens] >XP_024358403.1 ribonuclease P protein subunit p25-like protein [Physcomitrella patens] >PNR33172.1 hypothetical protein PHYPA_025115 [Physcomitrella patens])

HSP 1 Score: 110.2 bits (274), Expect = 6.200e-21
Identity = 49/104 (47.12%), Postives = 73/104 (70.19%), Query Frame = 0 
Query:   40 KYRLLACHRDDAPAKTNEVRVTYQGPVKSYLGYAMALFEERGARAVALKGMGRAIHKALTVAEILKRSLPGLHQRTEIGSLPFKEVWAPLEEGLNRVESTRYIS 144
            +Y+ +   R + P   NE+R+T QG +++Y+ YA  L +E+GA  + LK MGRAI+K +T+AEI+KR + GLHQ T IGS    ++W PLEEGL  +E+TR++S
Sbjct:    3 RYQRVEKPRPEIPINENEIRITTQGKMRNYITYATTLLQEKGASEIVLKAMGRAINKTVTIAEIIKRRIAGLHQNTSIGSTDITDLWEPLEEGLLPLETTRHVS 106
[Close]
BLAST of NO20G01590 vs. NCBI_GenBank
Match: CBI18930.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 109.4 bits (272), Expect = 1.100e-20
Identity = 47/104 (45.19%), Postives = 73/104 (70.19%), Query Frame = 0 
Query:   40 KYRLLACHRDDAPAKTNEVRVTYQGPVKSYLGYAMALFEERGARAVALKGMGRAIHKALTVAEILKRSLPGLHQRTEIGSLPFKEVWAPLEEGLNRVESTRYIS 144
            +Y+ +   R++ P   NE+R+T QG ++SY+ YAM+L +E+G+  +  K MGRAI+K +T+ E++KR + GLHQ T IGS    + W PLEEGL  +E+TR++S
Sbjct:  260 RYQRVEKPREETPIDENEIRITSQGRMRSYITYAMSLLQEKGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTSIGSTDITDTWEPLEEGLLPLETTRHVS 363
[Close]
BLAST of NO20G01590 vs. NCBI_GenBank
Match: XP_002284740.2 (PREDICTED: uncharacterized protein LOC100254082 [Vitis vinifera] >XP_010664145.1 PREDICTED: uncharacterized protein LOC100254082 [Vitis vinifera] >CAN73522.1 hypothetical protein VITISV_004987 [Vitis vinifera])

HSP 1 Score: 109.4 bits (272), Expect = 1.100e-20
Identity = 47/104 (45.19%), Postives = 73/104 (70.19%), Query Frame = 0 
Query:   40 KYRLLACHRDDAPAKTNEVRVTYQGPVKSYLGYAMALFEERGARAVALKGMGRAIHKALTVAEILKRSLPGLHQRTEIGSLPFKEVWAPLEEGLNRVESTRYIS 144
            +Y+ +   R++ P   NE+R+T QG ++SY+ YAM+L +E+G+  +  K MGRAI+K +T+ E++KR + GLHQ T IGS    + W PLEEGL  +E+TR++S
Sbjct:    3 RYQRVEKPREETPIDENEIRITSQGRMRSYITYAMSLLQEKGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTSIGSTDITDTWEPLEEGLLPLETTRHVS 106
[Close]
BLAST of NO20G01590 vs. NCBI_GenBank
Match: APT68000.1 (alba [Marchantia polymorpha])

HSP 1 Score: 109.4 bits (272), Expect = 1.100e-20
Identity = 48/104 (46.15%), Postives = 73/104 (70.19%), Query Frame = 0 
Query:   40 KYRLLACHRDDAPAKTNEVRVTYQGPVKSYLGYAMALFEERGARAVALKGMGRAIHKALTVAEILKRSLPGLHQRTEIGSLPFKEVWAPLEEGLNRVESTRYIS 144
            +Y+ +   R + P   NE+R+T QG +++Y+ YA  L +++GA  + LK MGRAI+K +T+AEI+KR + GLHQ T IGS    ++W PLEEGL  +E+TR++S
Sbjct:    3 RYQRVEKPRPETPISENEIRITTQGKMRNYITYATTLLQDKGASEIVLKAMGRAINKTVTIAEIIKRRIAGLHQNTSIGSTDITDLWQPLEEGLLPLETTRHVS 106
The following BLAST results are available for this feature:
BLAST of NO20G01590 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_024361551.11.300e-2148.08ribonuclease P protein subunit p25-like [Physcomit... [more]
ABR18130.11.600e-2150.00unknown [Picea sitchensis][more]
GAQ88218.11.600e-2147.12hypothetical protein KFL_004100060 [Klebsormidium ... [more]
XP_011003072.14.800e-2147.12PREDICTED: ribonuclease P protein subunit p25-like... [more]
XP_010061099.16.200e-2145.19PREDICTED: ribonuclease P protein subunit p25-like... [more]
XP_018732277.16.200e-2145.19PREDICTED: ribonuclease P protein subunit p25-like... [more]
XP_024358400.16.200e-2147.12ribonuclease P protein subunit p25-like protein [P... [more]
CBI18930.31.100e-2045.19unnamed protein product, partial [Vitis vinifera][more]
XP_002284740.21.100e-2045.19PREDICTED: uncharacterized protein LOC100254082 [V... [more]
APT68000.11.100e-2046.15alba [Marchantia polymorpha][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL023nonsL023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G01590.1NO20G01590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594782gene_6375Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G01590.1NO20G01590.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G01590 ID=NO20G01590|Name=NO20G01590|organism=Nannochloropsis oceanica|type=gene|length=567bp
ATGGAGTTGCCGTGTGACAAACAACAGTTTTCTGTACCCTCCGGTCAGAG
CGACAACTTTGGCGCCGCCGGTGTCCAGGTCTCTATCTCCGCCCCTGCCC
CACAACGCTACCGTAGCAAATACCGCCTCTTGGCCTGTCATCGGGATGAT
GCACCTGCCAAGACCAACGAAGTACGCGTCACCTACCAAGGACCAGTTAA
GAGTTACCTGGGCTATGCCATGGCCCTGTTCGAGGAGCGCGGTGCCCGGG
CCGTGGCGCTGAAAGGCATGGGGAGGGCCATCCACAAGGCCTTGACGGTT
GCCGAAATTTTGAAACGCAGCTTGCCTGGACTCCATCAACGCACTGAAAT
TGGATCCCTGCCGTTCAAAGAGGTGTGGGCACCGTTGGAGGAAGGCTTGA
ATCGCGTCGAGTCGACGCGTTACATTTCTTCACGCTATCGAAAGATCCTC
CTCCCCTCGACATTCGCCATTTTTGCCGAATAATCGTCCAACGTGCGTTA
AGACTTGAAGGGGGCGGATCGGTCAGCCATATGAGAAGCTGCCATAAAGA
GGACTCCCCTTGGTCCC
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protein sequence of NO20G01590.1

>NO20G01590.1-protein ID=NO20G01590.1-protein|Name=NO20G01590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=161bp
MELPCDKQQFSVPSGQSDNFGAAGVQVSISAPAPQRYRSKYRLLACHRDD
APAKTNEVRVTYQGPVKSYLGYAMALFEERGARAVALKGMGRAIHKALTV
AEILKRSLPGLHQRTEIGSLPFKEVWAPLEEGLNRVESTRYISSRYRKIL
LPSTFAIFAE*
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Synonyms
Publications