NO20G01510, NO20G01510 (gene) Nannochloropsis oceanica

Overview
NameNO20G01510
Unique NameNO20G01510
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1476
Alignment locationchr20:465944..467419 -

Link to JBrowse

Properties
Property NameValue
DescriptionBSD domain-containing protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:465944..467419 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005607BSD
Homology
BLAST of NO20G01510 vs. NCBI_GenBank
Match: EWM22090.1 (BSD domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 151.0 bits (380), Expect = 8.100e-33
Identity = 116/351 (33.05%), Postives = 179/351 (51.00%), Query Frame = 0
Query:   14 MWRILQQDFSEFVAVVAKDSKEVLSAVMQAQDEHDDG---SSSSSRGTITITATDGLSATETDLLRLQHDPRTFTEAVNEVDKEQWVSFVGGLDLSSKATEMACLLKENKDVARMHAKLVRNEGNE---NEEGDKIDTETFWLRYFYRLDRLVRQKRGVTLPSALAGEDDEEEDLSWGXXXXXXXGKE----LKTDKPKTNEQMVDPVVATAAGVLAVVRAEKKHVEEGQQAASTSVYSFPSKIISSPQFNDHDDRTTRPQPVPLQEDVAAGDLNANESTSTNAVEAELARMQNAIRIYKTRTHEVEVDLLGWKKKCAILEGRLEKAQTKKKEITALATDSIAKLRAQQME 355
            MWR  QQD SEFV+VV  D+KE LS+V+Q   EHD+      S  +    + +T  LSA + DLL LQ DP+T+TEA+ E DKE+W  F+  L L +K  E+A LL++ + VAR++  L+ ++      N  G++ID ETFW RYF++++ L+R +R    P  L G DD EEDLSWG       GK+     +   P T     +P  A+ +       +      +   AAS+   S    +++    N++    T+   V    D    + +   STST A+EA    +Q  +  Y+T  + +  ++   K KC  LE +   A  K+  + A  + ++  L+  Q E
Sbjct:    1 MWRTFQQDISEFVSVVTGDAKEALSSVLQTPSEHDNTHVMRKSCDKSNTNLHST--LSAQDEDLLSLQRDPKTYTEAIAEEDKERWQIFLAQLQLDTKQDEIARLLEDQEHVARLYKVLISSDQKHYDGNGTGNQIDHETFWSRYFFKVESLLRPQRDFPPPLNLTGGDD-EEDLSWGDEDEGVSGKKDNSADRVQAPGTEGNNTEPPGASNS-------SSPMEEPDLDHAASS---SHAQNVVADSAVNENG--LTKSNRV-THCDEEREERSDTPSTSTPALEA--PPLQAKVEKYETLINGMRKEISSLKSKCTTLERQCADAIQKEGRVVAQLSGTLTALKQSQDE 333          
BLAST of NO20G01510 vs. NCBI_GenBank
Match: XP_006358434.1 (PREDICTED: BSD domain-containing protein 1 [Solanum tuberosum])

HSP 1 Score: 66.6 bits (161), Expect = 2.000e-7
Identity = 46/158 (29.11%), Postives = 81/158 (51.27%), Query Frame = 0
Query:   29 VAKDSKEVLSAVMQAQDEHDDGSSSSSRGTITITATDGLSATETDLLRLQHDPRTFTEAVNEVDKEQWVSFVGGLDLSSKATEMACLLKENKDVARMHAKLVRNEGNENEEGDKIDTETFWLRYFYRLDRLVRQK--RGVTLPSALAGEDDEEEDLSW 185
            +    K+ L A   A+ E  D + + + G          S  E+ L+ +Q DP TF   ++  D E++  +    +L  K+ E+  L++EN+ +  ++ ++V NE         +D ETFW RYFY++ +L +Q+  R   +  A+A   D+EE+LSW
Sbjct:  134 IISQGKDTLLASSDAEPETPDANRTLNSGR--------YSRFESQLMNIQSDPNTF--CMDPEDLEEYKKWKSEFELKEKSKEVEILIEENESLEGIYKRVVPNE---------VDNETFWCRYFYKVYKLKQQESVRANLVKRAIA--IDDEEELSW 270          
BLAST of NO20G01510 vs. NCBI_GenBank
Match: XP_015088175.1 (PREDICTED: BSD domain-containing protein 1 [Solanum pennellii])

HSP 1 Score: 65.9 bits (159), Expect = 3.400e-7
Identity = 48/178 (26.97%), Postives = 82/178 (46.07%), Query Frame = 0
Query:   29 VAKDSKEVLSAVMQAQDEHDDGSSSSSRGTITITATDGLSATETDLLRLQHDPRTFTEAVNEVDKEQWVSFVGGLDLSSKATEMACLLKENKDVARMHAKLVRNEGNENEEGDKIDTETFWLRYFYRLDRLVRQKRGVTLPSALAGEDDEEEDLSWGXXXXXXXGKELKTDKPKTNEQ 207
            +    K+ L A   A+ E  D + + + G          S  E+ L+ +Q DP TF   V+  D E++  +    DL   + E+  L++EN  +  ++ ++V NE         +D ETFW RYFY++ +L +Q+         A   D+EE+LSW         ++    K K +E+
Sbjct:  134 IISQGKDTLLASSDAESETPDANRTLNSGR--------YSRFESQLMNIQSDPNTF--CVDPEDLEEYNKWKSEFDLKENSKEVEILIEENGSLEGIYKRVVPNE---------VDNETFWCRYFYKVYKLKQQESVRANLVKRAISIDDEEELSWDVDDEDDNNEQENIAKSKFDEK 292          
BLAST of NO20G01510 vs. NCBI_GenBank
Match: XP_013637329.1 (PREDICTED: BSD domain-containing protein 1 [Brassica oleracea var. oleracea])

HSP 1 Score: 65.1 bits (157), Expect = 5.800e-7
Identity = 57/196 (29.08%), Postives = 91/196 (46.43%), Query Frame = 0
Query:   20 QDFSEFVAVVAKDSKEVLS----AVMQAQDEHDDGSSSSSRGTITITATDGLSATETDLLRLQHDPRTFTEAVNEVDK-EQWVSFVGGLDLSSKATEMACLLKENKDVARMHAKLVRNEGNENEEGDKIDTETFWLRYFYRLDRL--VRQKRGVTLPSALAGEDDEEEDLSWGXXXXXXXGKELKTDKPKTNEQMV 209
            Q   +    V K + +++S    +++ +   H D  SS  RG     +    S  E  LL +Q D  T+    +++ + E+W     G  L  K   +A L+  N+ V  M+ KLV  E         +D ETFW RY+Y++ +L  V + R   +  A++GE  EEEDLSW        G E + D+  + E +V
Sbjct:  144 QAIDDIGGAVWKSTAKIISRGKDSLLSSSSSHPD--SSGDRGYHQALSVKPYSRFEMQLLAIQSDKATYVREPDDLGEFEKWSL---GFKLEEKGDVIADLINGNEGVKEMYVKLVPME---------VDAETFWRRYYYKVHKLEEVEEARVKLVKRAISGE--EEEDLSW-DLDDEGDGTEAEKDRKISEENVV 322          
BLAST of NO20G01510 vs. NCBI_GenBank
Match: XP_013732612.1 (BSD domain-containing protein 1-like [Brassica napus])

HSP 1 Score: 65.1 bits (157), Expect = 5.800e-7
Identity = 57/196 (29.08%), Postives = 91/196 (46.43%), Query Frame = 0
Query:   20 QDFSEFVAVVAKDSKEVLS----AVMQAQDEHDDGSSSSSRGTITITATDGLSATETDLLRLQHDPRTFTEAVNEVDK-EQWVSFVGGLDLSSKATEMACLLKENKDVARMHAKLVRNEGNENEEGDKIDTETFWLRYFYRLDRL--VRQKRGVTLPSALAGEDDEEEDLSWGXXXXXXXGKELKTDKPKTNEQMV 209
            Q   +    V K + +++S    +++ +   H D  SS  RG     +    S  E  LL +Q D  T+    +++ + E+W     G  L  K   +A L+  N+ V  M+ KLV  E         +D ETFW RY+Y++ +L  V + R   +  A++GE  EEEDLSW        G E + D+  + E +V
Sbjct:  144 QAIDDIGGAVWKSTAKIISRGKDSLLSSSSSHPD--SSGDRGYHQALSVKPYSRFEMQLLAIQSDKATYVREPDDLGEFEKWSL---GFKLEEKGDVIADLINGNEGVKEMYVKLVPME---------VDAETFWRRYYYKVHKLEEVEEARVKLVKRAISGE--EEEDLSW-DLDDEGDGTEAEKDRKISEENVV 322          
BLAST of NO20G01510 vs. NCBI_GenBank
Match: XP_004247485.1 (PREDICTED: BSD domain-containing protein 1 [Solanum lycopersicum])

HSP 1 Score: 64.7 bits (156), Expect = 7.600e-7
Identity = 45/156 (28.85%), Postives = 74/156 (47.44%), Query Frame = 0
Query:   29 VAKDSKEVLSAVMQAQDEHDDGSSSSSRGTITITATDGLSATETDLLRLQHDPRTFTEAVNEVDKEQWVSFVGGLDLSSKATEMACLLKENKDVARMHAKLVRNEGNENEEGDKIDTETFWLRYFYRLDRLVRQKRGVTLPSALAGEDDEEEDLSW 185
            +    K+ L A   A+ E  D + + + G          S  E+ L+ +Q DP TF   V+  D E++  +    DL   + E+  L++EN  +  +  ++V NE         +D ETFW RYFY++ +L +Q+         A   D+EE+LSW
Sbjct:  133 IISQGKDTLLASSDAESETPDANQTLNSGR--------YSRFESQLMNIQSDPNTF--CVDPEDLEEYKKWKSEFDLKENSKEVEILIEENGSLEGIFKRVVPNE---------VDNETFWCRYFYKVYKLKQQESVRANLVKRAISIDDEEELSW 269          
BLAST of NO20G01510 vs. NCBI_GenBank
Match: XP_021891371.1 (BSD domain-containing protein 1-A [Carica papaya])

HSP 1 Score: 64.7 bits (156), Expect = 7.600e-7
Identity = 52/169 (30.77%), Postives = 87/169 (51.48%), Query Frame = 0
Query:   24 EFVAVVAKDSKEVLS----AVMQAQDEHD--DGSSSSSRGTITITATDGLSATETDLLRLQHDPRTFTEAVNEVDKEQWVSFVGGLDLSSKATEMACLLKENKDVARMHAKLVRNEGNENEEGDKIDTETFWLRYFYRLDRLVRQK--RGVTLPSALAGEDDEEEDLSW 185
            EF + V K + +++S    A++ A +E D  D +SS + G     ++   S  E+ +  +Q D  T+ E   +V  E++  +  G  L  K  EM  LL+EN  +  ++ K+V N          +D ETFW RYFY++ +L + +  R   +  A++ E  EEE+LSW
Sbjct:  109 EFGSTVLKGTAQIISQGKDAILAADNESDSSDTNSSKNHGAHRSLSSKRYSRFESQISAIQGDANTYCEEPEDV--EEYRKWKLGFVLDEKREEMKRLLEENGSMESVYNKVVPN---------TVDQETFWSRYFYKVHKLKQAEDVRANLVKRAISRE--EEEELSW 264          
BLAST of NO20G01510 vs. NCBI_GenBank
Match: XP_004148869.1 (PREDICTED: BSD domain-containing protein 1 [Cucumis sativus] >KGN44859.1 hypothetical protein Csa_7G392320 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 9.900e-7
Identity = 53/172 (30.81%), Postives = 90/172 (52.33%), Query Frame = 0
Query:   22 FSEFVAVVAKDSKEVLSA---VMQAQDEHDDGSSSSSRGTITITATDG--LSATETDLLRLQHDPRTFTEAVNEV-DKEQWVS-FVGGLDLSSKATEMACLLKENKDVARMHAKLVRNEGNENEEGDKIDTETFWLRYFYRLDRLVRQK--RGVTLPSALAGEDDEEEDLSW 185
            F EF + V K + ++++     +QA D+  D  SS+++      +++    S  +  +  LQ D  T+ +   ++ D E+W S FV    L+ K+ E+  L++EN  +  +H K+V N          +D ETFW RYFY++ +L + +  R   +  A+A E  EEEDLSW
Sbjct:  103 FDEFGSSVLKGTAQIIAQGKNAIQAIDQESDSDSSTNQNLSNQRSSNSKPYSRFDAQVRSLQGDTATYCDEPEDLGDYEKWRSQFV----LNDKSEEIENLIEENGAIDNIHKKVVPN---------VVDNETFWFRYFYKVHKLKQAEDVRANLVKRAIARE--EEEDLSW 259          
The following BLAST results are available for this feature:
BLAST of NO20G01510 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 8
Match NameE-valueIdentityDescription
EWM22090.18.100e-3333.05BSD domain-containing protein [Nannochloropsis gad... [more]
XP_006358434.12.000e-729.11PREDICTED: BSD domain-containing protein 1 [Solanu... [more]
XP_015088175.13.400e-726.97PREDICTED: BSD domain-containing protein 1 [Solanu... [more]
XP_013637329.15.800e-729.08PREDICTED: BSD domain-containing protein 1 [Brassi... [more]
XP_013732612.15.800e-729.08BSD domain-containing protein 1-like [Brassica nap... [more]
XP_004247485.17.600e-728.85PREDICTED: BSD domain-containing protein 1 [Solanu... [more]
XP_021891371.17.600e-730.77BSD domain-containing protein 1-A [Carica papaya][more]
XP_004148869.19.900e-730.81PREDICTED: BSD domain-containing protein 1 [Cucumi... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL023nonsL023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002684NSK002684Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G01510.1NO20G01510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594757gene_6367Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G01510.1NO20G01510.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G01510 ID=NO20G01510|Name=NO20G01510|organism=Nannochloropsis oceanica|type=gene|length=1476bp
ATGCCACCAACCCGACGCACAGATCCTCTCATCGCAGAGATGTGGCGCAT
TCTGCAGCAAGATTTTTCCGAGTTTGTTGCCGTAGTGGCCAAGGACAGCA
AGGAAGTCCTGTCCGCAGTCATGCAAGCCCAAGACGAACACGATGACGGC
AGCAGCAGCAGCAGTCGTGGGACTATCACGATCACCGCCACCGATGGCCT
CTCTGCCACGGAGACGGACTTGTTGAGGTTGCAGCATGACCCAAGAACCT
TTACTGAGGCAGTTAACGAGGTGGACAAGGAACAATGGGTCTCCTTTGTT
GGCGGGCTCGACCTGAGTAGCAAGGCTACAGAGATGGCCTGCTTGCTCAA
GGAAAACAAGGACGTTGCACGCATGCACGCCAAGCTTGTCAGAAACGAAG
GGAATGAAAATGAGGAGGGAGATAAAATCGATACAGAGACATTCTGGCTG
CGGTATTTTTACAGGCTGGACCGTTTAGTGCGACAAAAGCGGGGGGTAAC
CTTGCCTTCGGCCTTAGCAGGTGAGGATGACGAGGAGGAGGATCTGTCGT
GGGGAGACGATGAGGACGAGGACGAAGGGAAGGAGCTGAAGACTGACAAA
CCGAAGACCAATGAGCAGATGGTTGATCCAGTGGTGGCAACGGCAGCAGG
AGTTCTTGCCGTCGTTCGTGCCGAGAAGAAGCATGTGGAAGAGGGACAGC
AGGCTGCCTCTACATCCGTATACAGCTTTCCTTCGAAAATCATTTCTTCT
CCACAATTTAATGATCACGATGATAGAACTACCAGGCCACAGCCAGTCCC
GCTTCAGGAAGATGTAGCCGCGGGGGACCTCAACGCTAATGAAAGTACCA
GCACCAACGCTGTTGAGGCAGAGCTGGCTCGCATGCAGAATGCAATTAGG
ATATACAAAACACGGACTCACGAAGTGGAGGTGGACCTTCTGGGATGGAA
AAAGAAGTGCGCCATTTTGGAAGGGCGACTGGAGAAGGCGCAAACCAAGA
AAAAGGAAATCACAGCGTTAGCGACCGATTCCATCGCGAAGCTTCGAGCC
CAGCAAATGGAGCACAAGAAGTTGCAGCAGCAGCACGAAGAGCTAAAACT
GCAGCATGATCAGCTGCAGCAGCAGTTCCAAGATCGGGAGCAGCAGCATT
TGCCACTCTCGCGGTGGCCGCAGCGGGAAAAGTCACTCACACACATTGAC
GGGGTGAATGGTATTGAGTGAGAAGAGGAGGAGGGGGAGGAGCAGATAGG
CGAGGAGCTAGAAGCATGGTCGTGAGAAAATGTAGATGATTAAAGAGCGA
GTACAATCGATATATAGCGATGTATGGGAATTCAATATGCCTGGTTGGGT
GACCACTTCGCATTTCTTTCGCTGCTGCTTTTCCTCGTCTCATTCTGGTT
GACACAGCCTTCCTCCTTGGGACCGCAAAGCATGGCCAAATCGTAGCGTT
TACAAAAACGCAACACTAAATCAAAA
back to top

protein sequence of NO20G01510.1

>NO20G01510.1-protein ID=NO20G01510.1-protein|Name=NO20G01510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=407bp
MPPTRRTDPLIAEMWRILQQDFSEFVAVVAKDSKEVLSAVMQAQDEHDDG
SSSSSRGTITITATDGLSATETDLLRLQHDPRTFTEAVNEVDKEQWVSFV
GGLDLSSKATEMACLLKENKDVARMHAKLVRNEGNENEEGDKIDTETFWL
RYFYRLDRLVRQKRGVTLPSALAGEDDEEEDLSWGDDEDEDEGKELKTDK
PKTNEQMVDPVVATAAGVLAVVRAEKKHVEEGQQAASTSVYSFPSKIISS
PQFNDHDDRTTRPQPVPLQEDVAAGDLNANESTSTNAVEAELARMQNAIR
IYKTRTHEVEVDLLGWKKKCAILEGRLEKAQTKKKEITALATDSIAKLRA
QQMEHKKLQQQHEELKLQHDQLQQQFQDREQQHLPLSRWPQREKSLTHID
GVNGIE*
back to top
Synonyms
Publications