NO20G01390, NO20G01390 (gene) Nannochloropsis oceanica

Overview
NameNO20G01390
Unique NameNO20G01390
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1065
Alignment locationchr20:424012..425076 +

Link to JBrowse

Properties
Property NameValue
DescriptionAnaphase-promoting complex subunit 11
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:424012..425076 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR024991Apc11
Vocabulary: Molecular Function
TermDefinition
GO:0004842ubiquitin-protein transferase activity
GO:0016740transferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005680anaphase-promoting complex
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
Homology
[Close]
BLAST of NO20G01390 vs. NCBI_GenBank
Match: EWM22080.1 (anaphase-promoting complex subunit 11 [Nannochloropsis gaditana])

HSP 1 Score: 147.5 bits (371), Expect = 1.400e-32
Identity = 57/62 (91.94%), Postives = 60/62 (96.77%), Query Frame = 0 
Query:    1 MKVKIQRWHGVATWRWDVNDERCGICYTAFEACCPDCNIPGDDCPPVWGRCNHAFHMHCIMK 63
            MKVKI+RWH VATW+WDVNDERCGICYTAFEACCPDC+IPGDDCPPVWG CNHAFHMHCIMK
Sbjct:    1 MKVKIKRWHAVATWQWDVNDERCGICYTAFEACCPDCHIPGDDCPPVWGGCNHAFHMHCIMK 62
[Close]
BLAST of NO20G01390 vs. NCBI_GenBank
Match: POM58436.1 (Anaphase-promoting complex subunit 11 domain containing hypothetical protein [Phytophthora palmivora var. palmivora])

HSP 1 Score: 127.9 bits (320), Expect = 1.200e-26
Identity = 48/62 (77.42%), Postives = 54/62 (87.10%), Query Frame = 0 
Query:    1 MKVKIQRWHGVATWRWDVNDERCGICYTAFEACCPDCNIPGDDCPPVWGRCNHAFHMHCIMK 63
            MKV I+RWHGVATW+W V++E CGIC  AFEACCPDC +PGD CPPVWG CNHAFHMHC+MK
Sbjct:    1 MKVTIKRWHGVATWKWGVDEECCGICRYAFEACCPDCTMPGDGCPPVWGACNHAFHMHCLMK 62
[Close]
BLAST of NO20G01390 vs. NCBI_GenBank
Match: POM65884.1 (Anaphase-promoting complex subunit 11 domain containing hypothetical protein [Phytophthora palmivora var. palmivora])

HSP 1 Score: 127.9 bits (320), Expect = 1.200e-26
Identity = 48/62 (77.42%), Postives = 54/62 (87.10%), Query Frame = 0 
Query:    1 MKVKIQRWHGVATWRWDVNDERCGICYTAFEACCPDCNIPGDDCPPVWGRCNHAFHMHCIMK 63
            MKV I+RWHGVATW+W V++E CGIC  AFEACCPDC +PGD CPPVWG CNHAFHMHC+MK
Sbjct:    1 MKVTIKRWHGVATWKWGVDEECCGICRYAFEACCPDCTMPGDGCPPVWGACNHAFHMHCLMK 62
[Close]
BLAST of NO20G01390 vs. NCBI_GenBank
Match: OWZ10335.1 (Anaphase-promoting complex subunit 11 [Phytophthora megakarya])

HSP 1 Score: 126.7 bits (317), Expect = 2.600e-26
Identity = 47/62 (75.81%), Postives = 54/62 (87.10%), Query Frame = 0 
Query:    1 MKVKIQRWHGVATWRWDVNDERCGICYTAFEACCPDCNIPGDDCPPVWGRCNHAFHMHCIMK 63
            MKV I++WHGVATW+W V++E CGIC  AFEACCPDC +PGD CPPVWG CNHAFHMHC+MK
Sbjct:    1 MKVTIKKWHGVATWKWGVDEECCGICRYAFEACCPDCTMPGDGCPPVWGACNHAFHMHCLMK 62
[Close]
BLAST of NO20G01390 vs. NCBI_GenBank
Match: XP_009521384.1 (hypothetical protein PHYSODRAFT_345071 [Phytophthora sojae] >EGZ26096.1 hypothetical protein PHYSODRAFT_345071 [Phytophthora sojae])

HSP 1 Score: 125.9 bits (315), Expect = 4.500e-26
Identity = 48/62 (77.42%), Postives = 53/62 (85.48%), Query Frame = 0 
Query:    1 MKVKIQRWHGVATWRWDVNDERCGICYTAFEACCPDCNIPGDDCPPVWGRCNHAFHMHCIMK 63
            MKV I+RWHGVATW W V++E CGIC  AFEACCPDC +PGD CPPVWG CNHAFHMHC+MK
Sbjct:    9 MKVTIKRWHGVATWTWGVDEECCGICRYAFEACCPDCAMPGDGCPPVWGACNHAFHMHCLMK 70
[Close]
BLAST of NO20G01390 vs. NCBI_GenBank
Match: XP_008896325.1 (hypothetical protein PPTG_04211 [Phytophthora parasitica INRA-310] >ETI35990.1 hypothetical protein F443_17814 [Phytophthora parasitica P1569] >ETL82885.1 hypothetical protein L917_17069 [Phytophthora parasitica] >ETM36118.1 hypothetical protein L914_17139 [Phytophthora parasitica] >ETN18688.1 hypothetical protein PPTG_04211 [Phytophthora parasitica INRA-310] >ETO64709.1 hypothetical protein F444_17851 [Phytophthora parasitica P1976])

HSP 1 Score: 124.8 bits (312), Expect = 1.000e-25
Identity = 46/62 (74.19%), Postives = 54/62 (87.10%), Query Frame = 0 
Query:    1 MKVKIQRWHGVATWRWDVNDERCGICYTAFEACCPDCNIPGDDCPPVWGRCNHAFHMHCIMK 63
            MKV I+RWHGVATW+W V++E CGIC  AFEACCP+C +PGD CPPVWG CNHAFHMHC++K
Sbjct:    1 MKVTIKRWHGVATWKWGVDEECCGICRYAFEACCPECTMPGDGCPPVWGACNHAFHMHCLVK 62
[Close]
BLAST of NO20G01390 vs. NCBI_GenBank
Match: ETK76225.1 (hypothetical protein L915_17343 [Phytophthora parasitica] >ETL29663.1 hypothetical protein L916_17236 [Phytophthora parasitica] >ETP05808.1 hypothetical protein F441_17691 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 124.8 bits (312), Expect = 1.000e-25
Identity = 46/62 (74.19%), Postives = 54/62 (87.10%), Query Frame = 0 
Query:    1 MKVKIQRWHGVATWRWDVNDERCGICYTAFEACCPDCNIPGDDCPPVWGRCNHAFHMHCIMK 63
            MKV I+RWHGVATW+W V++E CGIC  AFEACCP+C +PGD CPPVWG CNHAFHMHC++K
Sbjct:   17 MKVTIKRWHGVATWKWGVDEECCGICRYAFEACCPECTMPGDGCPPVWGACNHAFHMHCLVK 78
[Close]
BLAST of NO20G01390 vs. NCBI_GenBank
Match: ETP33918.1 (hypothetical protein F442_17671 [Phytophthora parasitica P10297])

HSP 1 Score: 124.8 bits (312), Expect = 1.000e-25
Identity = 46/62 (74.19%), Postives = 54/62 (87.10%), Query Frame = 0 
Query:    1 MKVKIQRWHGVATWRWDVNDERCGICYTAFEACCPDCNIPGDDCPPVWGRCNHAFHMHCIMK 63
            MKV I+RWHGVATW+W V++E CGIC  AFEACCP+C +PGD CPPVWG CNHAFHMHC++K
Sbjct:   17 MKVTIKRWHGVATWKWGVDEECCGICRYAFEACCPECTMPGDGCPPVWGACNHAFHMHCLVK 78
[Close]
BLAST of NO20G01390 vs. NCBI_GenBank
Match: XP_020904846.1 (anaphase-promoting complex subunit 11-like [Exaiptasia pallida])

HSP 1 Score: 122.9 bits (307), Expect = 3.800e-25
Identity = 46/62 (74.19%), Postives = 52/62 (83.87%), Query Frame = 0 
Query:    1 MKVKIQRWHGVATWRWDVNDERCGICYTAFEACCPDCNIPGDDCPPVWGRCNHAFHMHCIMK 63
            MKVKI+RW GVATWRW  ND+ CGIC  AF+ CCPDC IPGDDCP VWG+C+H FHMHCI+K
Sbjct:    1 MKVKIKRWIGVATWRWVANDDSCGICRMAFDGCCPDCKIPGDDCPLVWGKCSHVFHMHCILK 62
[Close]
BLAST of NO20G01390 vs. NCBI_GenBank
Match: AAL13436.1 (anaphase promoting complex subunit 11 [Arabidopsis thaliana])

HSP 1 Score: 122.1 bits (305), Expect = 6.500e-25
Identity = 44/62 (70.97%), Postives = 50/62 (80.65%), Query Frame = 0 
Query:    1 MKVKIQRWHGVATWRWDVNDERCGICYTAFEACCPDCNIPGDDCPPVWGRCNHAFHMHCIMK 63
            MKVKI RWH VA+W WD  DE CGIC  AF+ CCPDC +PGDDCP +WG CNHAFH+HCI+K
Sbjct:    1 MKVKILRWHAVASWTWDAQDETCGICRMAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILK 62
The following BLAST results are available for this feature:
BLAST of NO20G01390 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22080.11.400e-3291.94anaphase-promoting complex subunit 11 [Nannochloro... [more]
POM58436.11.200e-2677.42Anaphase-promoting complex subunit 11 domain conta... [more]
POM65884.11.200e-2677.42Anaphase-promoting complex subunit 11 domain conta... [more]
OWZ10335.12.600e-2675.81Anaphase-promoting complex subunit 11 [Phytophthor... [more]
XP_009521384.14.500e-2677.42hypothetical protein PHYSODRAFT_345071 [Phytophtho... [more]
XP_008896325.11.000e-2574.19hypothetical protein PPTG_04211 [Phytophthora para... [more]
ETK76225.11.000e-2574.19hypothetical protein L915_17343 [Phytophthora para... [more]
ETP33918.11.000e-2574.19hypothetical protein F442_17671 [Phytophthora para... [more]
XP_020904846.13.800e-2574.19anaphase-promoting complex subunit 11-like [Exaipt... [more]
AAL13436.16.500e-2570.97anaphase promoting complex subunit 11 [Arabidopsis... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL023nonsL023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G01390.1NO20G01390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO20G01390.2NO20G01390.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594713gene_6355Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G01390.1NO20G01390.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO20G01390.2NO20G01390.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G01390 ID=NO20G01390|Name=NO20G01390|organism=Nannochloropsis oceanica|type=gene|length=1065bp
ACAGGTTGAGACTGTTAGCTGGGAGGAAACAAGGAAGGAAGGAAGGAAGG
AAGGACGAACGCCATTGTTTTCTTCATCATCACCCGCACACAGTCCGTCT
CATGAAGGTCAAGATCCAAAGgtaagttttgtggtgggctcgctctggat
ggcgcttacgagacgagttgtagtgaatattattattcacggacatctga
tcgggtgccttccgttgtccaactcaactgacctcccttttccccatttt
cgaccattcccgtgtacctcgacccccgacatagGTGGCATGGCGTGGCC
ACCTGGCGGTGGGATGTCAATGATGAGCGCTGTGGCATTTGCTACACGGC
ATTCGAAGCCTGTTGTCCGGATTGCAACATTCCCGGGGATGACTGCCCGC
CGGTGTGGGGTCGGTGCAACCATGCCTTTCACATGCACTGCATCATGAAG
GTACGTGAATGAATGAGGAGAATGGAAGCAGAACGCACGGAAGCGCTTCG
AAAAGGTGAATGATGGATATACAGGTAGAATGCACATATCACTGGCATAT
ACAGCAGTGAAAAATTACGGAGAGAGGGGGAGAGAGAGCAGCACATCAAC
ATAATGAACTTTTGTGGCACTTTCCTCCGACCTGTCCCTTTTTTGCTTCT
TGGATTCTACATTTCTTTCTTATTCTTCTTTGTCCTTCTTGATAACTCAC
ACAGTGGCTCAATAGTCAGGCGAACGCCAATAAACAAACCTGCCCGGCCT
GTCGTCAAAAATGGGAGTTTCGTGGCTGAGAGGCGACAGCACTTGTGAAT
GAAAAGTAAAGGAAAAATAAATGAACAGCGTCGAAAAAGACAAATCTACT
GAAAAGTATTCAATAGTTTAACGTACCGATGTCTCACGTCTGCTGCCGCT
GCTGCGGTGGTGGTGGAAAAAAGAGATTGAAAGGAAAAGGTAGAACCGCC
TGTACATAATTACATGGAAGAGCTGAAGAGCAACGAGGATGAGGGGGAAA
AAAAAAGGAAAAGCACAAAGGCGGTGGTAGCAGACCAGAAATGTACGCAC
ATGCGCACATTTCCA
back to top

protein sequence of NO20G01390.1

>NO20G01390.1-protein ID=NO20G01390.1-protein|Name=NO20G01390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=87bp
MKVKIQRWHGVATWRWDVNDERCGICYTAFEACCPDCNIPGDDCPPVWGR
CNHAFHMHCIMKWLNSQANANKQTCPACRQKWEFRG*
back to top

protein sequence of NO20G01390.2

>NO20G01390.2-protein ID=NO20G01390.2-protein|Name=NO20G01390.2|organism=Nannochloropsis oceanica|type=polypeptide|length=66bp
MKVKIQRWHGVATWRWDVNDERCGICYTAFEACCPDCNIPGDDCPPVWGR
CNHAFHMHCIMKVRE*
back to top
Synonyms
Publications