NO20G01360, NO20G01360 (gene) Nannochloropsis oceanica

Overview
NameNO20G01360
Unique NameNO20G01360
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2643
Alignment locationchr20:404618..407260 +

Link to JBrowse

Properties
Property NameValue
DescriptionRna polymerase ii-associated protein 3
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:404618..407260 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
IPR013026TPR-contain_dom
IPR019734TPR_repeat
Homology
BLAST of NO20G01360 vs. NCBI_GenBank
Match: EWM22097.1 (rna polymerase ii-associated protein 3 [Nannochloropsis gaditana])

HSP 1 Score: 125.6 bits (314), Expect = 7.800e-25
Identity = 181/749 (24.17%), Postives = 259/749 (34.58%), Query Frame = 0
Query:    1 MDIVSELLLAPYPADERSPIPITTDLLDFDFIQNCDDPKVIRCILRRLQGRQDGVYPDLERETLDRLVLLSPTRVQAQVKALRAQPCPVEVAKEEEILQEWSDEMERKDAAMGMKRGVAVGSNRMRNEPGVVVVESSSP------PSRSARTIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAEKEIRDMSECL---RHTPLSL---RPLLAAQKKEDGNKLLKQGEYSEARAAYTLSLGHAPENAVVCANRALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRQVLVVCAAAAAPGEMKGGSGKAGMEEKEAMALLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDDIPAVSAGISLVEQKEEKVAVEEQDAGEERDNPDSSNTPGPQSAAVXXXXXXXXXXXXXXXXXXXXYIWPPPVRPGFQRLPIEEVRDGK-------YVTKAQWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNNRAQAHLKLERWEEAFRDASFVLDQDPGNIKARFRKGKALCRGGAECLATVEALWKKKEAGKEAREEVLRAREKEAESMCVVRKQGM-VGRAKEGLENAVKEMNMILAVESGNAEAQKERRLAKSLLSQYQQL 730
            MD+VSEL LA +  DE+ PI IT  LLD +FIQ+CDDPKV+R ILRRL+  +DG+  DLERE  DRL L SP +V+ +V  LRAQ  P E+A EE  L++W+ E+ ++D A+         +  + +  G  +V+   P      P R  RT+                                                        E+E+R     L   R T  SL   R ++AA  KE+GN   K+GEY++A A+YT SLG    +  VC NRAL                                                L +VL             G     G   +EA+ALL                                                 PA +    +     ++   E   +  E+  P+++  P P +                         +PPP+  GF+R+P+ E   G+            Q                                                                                                      YNNR  A+L+   WEEA RDAS VL+ +P NIKAR+R+GKA CR     +A V              EEVL +     ES+   R   + +  A++ L  A+K+++ IL  +  N EAQKE+ +A+ LLS+ Q +
Sbjct:    1 MDLVSELFLAGH-EDEKPPIRITPALLDANFIQSCDDPKVLRGILRRLKSGKDGLSADLEREVKDRLWLFSPAQVRGKVTTLRAQTPPEEIADEEARLEKWTAEICQRDKAL--------LATAVESSIGGELVDLDRPNSDRLTPVRPMRTVTASRSRVVGAREGTDYRAPTIVSSKSMQEALAPKVEDGNED---------------EEEVRAAESLLAATRQTCDSLPAQRMVMAASLKEEGNAFFKRGEYAKALASYTKSLGFNALDPAVCGNRALVYMRLGEWVKAEVDCTLAIARDPSYAKAWLRRGTIRRQRGKRAEARKDLEEVL-----------RWGAGSMDGKVAREALALLHQMDEEGRACSQDGKDAVQGLRDE----------------------TSAPASTPSSCVPSGPRDR---EGSASKPEKGYPEATPRPVPLADISNETCSMEMPSLEAD--------FPPPLAEGFRRVPVVEGEAGRPSSIRALSTASPQAPREVSLPLHTLHPRASFPQEASGERMRPSNDTLVQTNVSSEGASGGGSAPVKGKRSRNGGPLRETLALKEMGNKALARGDLARAIQYYSEGIERDAGHLPLYNNRCLAYLRQGLWEEARRDASRVLESEPENIKARYRRGKAACRAAESRVARV--------------EEVLGSTAGAGESLKGDRDPTVPLEAAEKALTAALKDLDWILERDKKNTEAQKEQGVARLLLSKLQTM 667          
BLAST of NO20G01360 vs. NCBI_GenBank
Match: XP_008614527.1 (hypothetical protein SDRG_10321 [Saprolegnia diclina VS20] >EQC32125.1 hypothetical protein SDRG_10321 [Saprolegnia diclina VS20])

HSP 1 Score: 67.0 bits (162), Expect = 3.300e-7
Identity = 84/249 (33.73%), Postives = 127/249 (51.00%), Query Frame = 0
Query:   22 ITTDLLDFDFIQNCDDPKVIRCILRRLQGRQDGVYPDLERETLDRLVLLSPTRVQAQVKALRAQPCPVEVAKEEEILQEWSDEMERKDAAMGMKRGVAVGSNRMRNEPGV--VVVESSSPPSRSARTIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAEKEIRDMSECLRHTPLSLRPLLAAQKKEDGNKLLKQGEYSEARAAYTLSLGHAPENAVVCANRAL 269
            +  ++LD+D+++ C D  +++ IL  LQ  ++G YP LER T  +L+ + P   + +++ L++QP   ++  E+  L  W  +MERK   +  +   A   +  RN P V      + + PS   + +                             XXXXXXXXXXXXXXXXXXXXXXXXX  ++    +S  L    L+ R + A  +K  GN+  K GE  EA   Y+ SL + P +A+V ANRAL
Sbjct:   21 VDVEMLDYDYVEKCTDADLLKNILAVLQSGKEGKYPQLERATEAQLLKVLPKAERDRIERLQSQPSYSDIDSEKAALASWERDMERKLQRLDDE---AQRVSAPRNRPAVRGRAQPTDASPSPLIQEVTTSKAKKQAIPAYDWQSWEKYDVEAAEREXXXXXXXXXXXXXXXXXXXXXXXXXXMKEAQMPLSVDLDVLTLTEREVYALHEKTKGNECFKLGENDEAILYYSRSLAYDPTSAIVHANRAL 266          
BLAST of NO20G01360 vs. NCBI_GenBank
Match: OQR82971.1 (hypothetical protein ACHHYP_15288 [Achlya hypogyna])

HSP 1 Score: 67.0 bits (162), Expect = 3.300e-7
Identity = 58/250 (23.20%), Postives = 101/250 (40.40%), Query Frame = 0
Query:   22 ITTDLLDFDFIQNCDDPKVIRCILRRLQGRQDGVYPDLERETLDRLVLLSPTRVQAQVKALRAQPCPVEVAKEEEILQEWSDEMERKDAAMGMKRGVAVGSNRMRNEPGVVVVESSSPPSRSARTIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAEKEIR---DMSECLRHTPLSLRPLLAAQKKEDGNKLLKQGEYSEARAAYTLSLGHAPENAVVCANRAL 269
            +  ++LD+D+++ C D ++++ IL  LQ  ++G YP LER T  +L+ + P   + +++ LR+QP   ++  E++ L  W  +ME K      +      S   R  P V     +SP +   + +                                                      A  ++      +S  + +   + R + A  +K  GN+  K GE  EA   Y+ SL + P NA+V ANRAL
Sbjct:   21 VDVEMLDYDYVEKCTDVELLKNILAVLQSGKEGKYPQLERATEAQLLKVLPQSERDRIERLRSQPSYSDIDGEKQALASWERDMEAK--LRRFEEEAQHKSAVPRQRPAVRGRPQTSPAAPLVQEVMATTTATKKKQAIPAYDWRAWEKYDVEKAEAELDMEEVRKAEESRKQREELAAHAKRRQAEANMPISVDVENLTPTEREVYALHEKHKGNECFKLGENDEAILYYSRSLAYDPTNAIVHANRAL 268          
BLAST of NO20G01360 vs. NCBI_GenBank
Match: CBJ31857.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 65.5 bits (158), Expect = 9.600e-7
Identity = 31/89 (34.83%), Postives = 53/89 (59.55%), Query Frame = 0
Query:   22 ITTDLLDFDFIQNCDDPKVIRCILRRLQGRQDGVYPDLERETLDRLVLLSPTRVQAQVKALRAQPCPVEVAKEEEILQEWSDEMERKDA 111
            +T ++LD+DF+  C DP +IR I R+L+  ++G YPDL +    RL+   P   ++++  ++A+P P E+ +    L  W +EM R  A
Sbjct:   18 VTIEMLDYDFLDKCTDPGLIRAIARKLKSGEEGHYPDLVKHAETRLLEELPQAERSKILRMKAEPQPDEIHEAISDLHGWEEEMARVPA 106          
BLAST of NO20G01360 vs. NCBI_GenBank
Match: OQS04908.1 (hypothetical protein THRCLA_20762 [Thraustotheca clavata])

HSP 1 Score: 65.5 bits (158), Expect = 9.600e-7
Identity = 74/251 (29.48%), Postives = 117/251 (46.61%), Query Frame = 0
Query:   22 ITTDLLDFDFIQNCDDPKVIRCILRRLQGRQDGVYPDLERETLDRLVLLSPTRVQAQVKALRAQPCPVEVAKEEEILQEWSDEMERKDAAMGMK----RGVAVGSNRMRNEPGVVVVESSSPPSRSARTIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAEKEIRDMSECLRHTPLSLRPLLAAQKKEDGNKLLKQGEYSEARAAYTLSLGHAPENAVVCANRAL 269
            +  ++LD++F+  C+D ++++ IL  LQ  ++G YP LE+ T ++L+   P   + ++  ++ +P   ++  E   L  W  EME K   + M+       A     +R  P     E +   +   + +                                  XXXXXXXXXXXXXXXXXXXX  ++    +S  L    L+ R + A  +K  GN+  K GE   A   Y+ SL + P+NA+V ANRAL
Sbjct:   19 VDIEMLDYEFVNKCNDVELLKNILAVLQSGKEGRYPHLEQATQNQLLKSLPKAERERIDRMQVKPTISDIDNERRALANWELEMENKSTQLEMEAQQVNKAARSRPAVRGRPNDTPQEKAPVKAPLIQELTEQTKTKKAIPAYDWRAWEKYDVEQAEKELELKEXXXXXXXXXXXXXXXXXXXXRLQEASMPLSVDLESLTLTEREVYALNEKNKGNECFKLGENDSALLYYSRSLAYDPKNAIVYANRAL 269          
BLAST of NO20G01360 vs. NCBI_GenBank
Match: GAX94720.1 (Hypothetical protein PINS_002587 [Pythium insidiosum])

HSP 1 Score: 65.5 bits (158), Expect = 9.600e-7
Identity = 29/91 (31.87%), Postives = 57/91 (62.64%), Query Frame = 0
Query:   22 ITTDLLDFDFIQNCDDPKVIRCILRRLQGRQDGVYPDLERETLDRLVLLSPTRVQAQVKALRAQPCPVEVAKEEEILQEWSDEMERKDAAM 113
            I  D+LD+ F++ C+D   ++ +L  L+  ++G YP LE+ T DR++ L P + + +++ +RA P   E++ E+E L  W+ E++ K  ++
Sbjct:   26 IHVDMLDYGFVERCNDLDELKGVLAMLRSGKEGRYPXLEKFTEDRILALLPEKERLKIQRMRATPSQEELSSEKEKLSSWTXEIDEKHRSL 116          
The following BLAST results are available for this feature:
BLAST of NO20G01360 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 6
Match NameE-valueIdentityDescription
EWM22097.17.800e-2524.17rna polymerase ii-associated protein 3 [Nannochlor... [more]
XP_008614527.13.300e-733.73hypothetical protein SDRG_10321 [Saprolegnia dicli... [more]
OQR82971.13.300e-723.20hypothetical protein ACHHYP_15288 [Achlya hypogyna... [more]
CBJ31857.19.600e-734.83conserved unknown protein [Ectocarpus siliculosus][more]
OQS04908.19.600e-729.48hypothetical protein THRCLA_20762 [Thraustotheca c... [more]
GAX94720.19.600e-731.87Hypothetical protein PINS_002587 [Pythium insidios... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL023nonsL023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002672NSK002672Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G01360.1NO20G01360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|530183gene_6351Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100039g27gene8340Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G01360.1NO20G01360.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G01360 ID=NO20G01360|Name=NO20G01360|organism=Nannochloropsis oceanica|type=gene|length=2643bp
ATGGATATTGTTTCTGAACTGCTGTTGGCCCCGTACCCAGCCGATGAGCG
TTCCCCCATCCCCATTACTACCGACCTGCTCGACTTCGATTTTATCCAAA
ACTGCGACGATCCCAAGGTTATCCGTTGCATCCTCCGTCGGCTCCAGGGC
AGACAAGATGGTGTCTACCCCGATTTAGAACGGGAAACATTGGACAGGCT
AGTGCTATTGTCCCCTACCCGAGTCCAGGCCCAAGTGAAGGCGTTGCGGG
CGCAGCCGTGCCCGGTAGAGGTCGCCAAGGAGGAAGAGATTTTGCAGGAG
TGGAGTGATGAGATGGAAAGAAAAGATGCCGCGATGGGGATGAAGCGTGG
TGTTGCTGTTGGGAGTAATAGAATGAGGAATGAACCAGGAGTGGTGGTGG
TAGAGTCGAGTAGTCCCCCTTCCCGGTCTGCCAGGACGATTATTACGATG
ACGACGACGAATTCGGGCAGTGCTACAGCACTACCGATTGCAACGGCAAC
AACAGCAGCACCAGCAGGAACCAAAGCATCAGCAACAGCAATCATGGCAG
TAAAAGAGAGGGAGGAGGAATGTGAGGACGAGGACGAGGACGAAAAGGTC
CAAGCTGCGGAAAAGGAAATAAGGGACATGAGCGAATGCCTCCGCCACAC
CCCTCTCTCGCTCCGTCCCCTCCTCGCCGCCCAAAAGAAGGAAGACGGCA
ACAAGCTACTCAAGCAGGGGGAATATTCCGAAGCCCGCGCCGCTTACACT
CTGTCACTCGGCCACGCTCCTGAAAATGCTGTGGTGTGTGCGAATCGGGC
CTTGGCCATGCTGAAACAGGGAATTTTTGACCAAGCTGAAGCGGACTGCA
CAATGGCCATAAATAGAGAGCCCTCATATGCCAAGGCTTGGCTTCGACGA
GGGATGATAAGGCACAAAATGGAAAAACGAGATAAAGCGCGAGGGGATCT
GAGGCAGGTCTTGGTGGTTTGTGCGGCTGCTGCTGCTCCGGGAGAAATGA
AAGGAGGAAGTGGAAAGGCTGGAATGGAGGAAAAGGAAGCAATGGCGCTG
TTGGCGAAGATGGATAAGGAGGACGGGAAGAAAGAGGAAGGAGAAAGAGT
GGGAGGGGGGGAGCCCGCAATGCCACCACCGAGCAGTTCCTCTCCTCCTC
CTCATCTTCCTCCCCCTCCTCCTGCTGCCGACTCTCTTGTCGACGACATA
CCCGCGGTTTCTGCCGGTATTTCGCTAGTGGAGCAAAAGGAGGAAAAGGT
AGCGGTTGAAGAGCAAGATGCAGGCGAGGAGAGGGACAACCCTGACTCGT
CCAACACACCTGGGCCACAATCAGCGGCAGTAGCGGTGGCAGCAGTAGGA
GCAGCGGGGACGGAGGGAGGGAAGGAAGGAGGGAAAGACGGTTATATTTG
GCCTCCTCCTGTACGCCCGGGCTTCCAACGTCTTCCCATCGAGGAAGTAA
GAGACGGAAAATACGTGACGAAAGCACAGTGGCAGCAGCAGCAGCAGCGT
CAGGGGTCGAGTAAGATGGATGGCAGCAGTGCCAAAAGTAGTAGCAGCAA
AAACCACAGCAGCAACAGAAACGACCGAGCTCATATTTTGAAAGAACAAG
GGAACAATGCTTTGTTAGAAAAAAACTACCATTCCGCCATAAAGCACTAT
ACTGAAGCGATTGCCGCCGATGCCGCCAACAGCGACAGCAGCAACAGTTC
CACCACCACTTATTTCAGCGAAAGCAACCACAATACCAGCCGCAGCAGCA
CCGCCACCACCACCACTAAGCTTTCCCTCATCCTGTACAATAATCGCGCA
CAGGCCCACCTCAAACTCGAACGATGGGAGGAGGCTTTCCGAGATGCCTC
ATTCGTCCTCGACCAGGACCCGGGAAATATTAAAGCCCGATTCAGGAAGG
GAAAGGCTTTGTGTAGAGGAGGAGCAGAATGCTTGGCAACAGTGGAGGCA
TTGTGGAAGAAGAAGGAGGCAGGGAAGGAGGCGAGGGAAGAGGTATTGAG
AGCGAGAGAGAAGGAAGCGGAGAGCATGTGTGTTGTTCGGAAACAAGGGA
TGGTGGGAAGGGCGAAGGAGGGATTGGAAAATGCTGTGAAGGAGATGAAC
ATGATTCTTGCGGTAGAAAGCGGCAACGCGGAGGCCCAAAAGGAGAGACG
GTTGGCTAAGTCGCTGTTGAGTCAGTATCAACAGCTTTTTAAACAAGTAG
GACATATGGGCGCTGCTGGAGTGGTAGGCGCGTCATCCATCCCTCCCTCC
TCCTCGCCGCATCCTCCCCCTAATGAACTCAAAACAATTTTGGCAGCGCA
CCGGGCGGAGATTGCCGGTGAAGAACGAGGGAAGGAGGGAGGGACCTCTT
CCATGATGCAAGAAGTGACGACGCGACCTCGAGTCCCACCTGTGGAAGCT
TTTCGAAAAATAGCCGTGGTGGAGGAAGGGAGAAGACAAGAGCAAGATGA
ACAACAAGAGCGACGTCGTCAAGGACAGCAGCTACCCATAACCCCACTCA
AAAACAGTCATTCCTCCATTTTTCCCTCCTCCTCCTCCTCCTCTGTTTTC
TCCTCCGTTTCCTCCCCCCTTTCTTCCGGAAAGAAGAAAATCCCCCCCCC
CCAACAAGCATCTCCGAGCTCGAGACACACTGGCGAACCTTGA
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protein sequence of NO20G01360.1

>NO20G01360.1-protein ID=NO20G01360.1-protein|Name=NO20G01360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=881bp
MDIVSELLLAPYPADERSPIPITTDLLDFDFIQNCDDPKVIRCILRRLQG
RQDGVYPDLERETLDRLVLLSPTRVQAQVKALRAQPCPVEVAKEEEILQE
WSDEMERKDAAMGMKRGVAVGSNRMRNEPGVVVVESSSPPSRSARTIITM
TTTNSGSATALPIATATTAAPAGTKASATAIMAVKEREEECEDEDEDEKV
QAAEKEIRDMSECLRHTPLSLRPLLAAQKKEDGNKLLKQGEYSEARAAYT
LSLGHAPENAVVCANRALAMLKQGIFDQAEADCTMAINREPSYAKAWLRR
GMIRHKMEKRDKARGDLRQVLVVCAAAAAPGEMKGGSGKAGMEEKEAMAL
LAKMDKEDGKKEEGERVGGGEPAMPPPSSSSPPPHLPPPPPAADSLVDDI
PAVSAGISLVEQKEEKVAVEEQDAGEERDNPDSSNTPGPQSAAVAVAAVG
AAGTEGGKEGGKDGYIWPPPVRPGFQRLPIEEVRDGKYVTKAQWQQQQQR
QGSSKMDGSSAKSSSSKNHSSNRNDRAHILKEQGNNALLEKNYHSAIKHY
TEAIAADAANSDSSNSSTTTYFSESNHNTSRSSTATTTTKLSLILYNNRA
QAHLKLERWEEAFRDASFVLDQDPGNIKARFRKGKALCRGGAECLATVEA
LWKKKEAGKEAREEVLRAREKEAESMCVVRKQGMVGRAKEGLENAVKEMN
MILAVESGNAEAQKERRLAKSLLSQYQQLFKQVGHMGAAGVVGASSIPPS
SSPHPPPNELKTILAAHRAEIAGEERGKEGGTSSMMQEVTTRPRVPPVEA
FRKIAVVEEGRRQEQDEQQERRRQGQQLPITPLKNSHSSIFPSSSSSSVF
SSVSSPLSSGKKKIPPPQQASPSSRHTGEP*
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Synonyms
Publications