NO20G01360, NO20G01360 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO20G01360 vs. NCBI_GenBank
Match: EWM22097.1 (rna polymerase ii-associated protein 3 [Nannochloropsis gaditana]) HSP 1 Score: 125.6 bits (314), Expect = 7.800e-25 Identity = 181/749 (24.17%), Postives = 259/749 (34.58%), Query Frame = 0 Query: 1 MDIVSELLLAPYPADERSPIPITTDLLDFDFIQNCDDPKVIRCILRRLQGRQDGVYPDLERETLDRLVLLSPTRVQAQVKALRAQPCPVEVAKEEEILQEWSDEMERKDAAMGMKRGVAVGSNRMRNEPGVVVVESSSP------PSRSARTIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAEKEIRDMSECL---RHTPLSL---RPLLAAQKKEDGNKLLKQGEYSEARAAYTLSLGHAPENAVVCANRALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRQVLVVCAAAAAPGEMKGGSGKAGMEEKEAMALLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDDIPAVSAGISLVEQKEEKVAVEEQDAGEERDNPDSSNTPGPQSAAVXXXXXXXXXXXXXXXXXXXXYIWPPPVRPGFQRLPIEEVRDGK-------YVTKAQWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNNRAQAHLKLERWEEAFRDASFVLDQDPGNIKARFRKGKALCRGGAECLATVEALWKKKEAGKEAREEVLRAREKEAESMCVVRKQGM-VGRAKEGLENAVKEMNMILAVESGNAEAQKERRLAKSLLSQYQQL 730 MD+VSEL LA + DE+ PI IT LLD +FIQ+CDDPKV+R ILRRL+ +DG+ DLERE DRL L SP +V+ +V LRAQ P E+A EE L++W+ E+ ++D A+ + + + G +V+ P P R RT+ E+E+R L R T SL R ++AA KE+GN K+GEY++A A+YT SLG + VC NRAL L +VL G G +EA+ALL PA + + ++ E + E+ P+++ P P + +PPP+ GF+R+P+ E G+ Q YNNR A+L+ WEEA RDAS VL+ +P NIKAR+R+GKA CR +A V EEVL + ES+ R + + A++ L A+K+++ IL + N EAQKE+ +A+ LLS+ Q + Sbjct: 1 MDLVSELFLAGH-EDEKPPIRITPALLDANFIQSCDDPKVLRGILRRLKSGKDGLSADLEREVKDRLWLFSPAQVRGKVTTLRAQTPPEEIADEEARLEKWTAEICQRDKAL--------LATAVESSIGGELVDLDRPNSDRLTPVRPMRTVTASRSRVVGAREGTDYRAPTIVSSKSMQEALAPKVEDGNED---------------EEEVRAAESLLAATRQTCDSLPAQRMVMAASLKEEGNAFFKRGEYAKALASYTKSLGFNALDPAVCGNRALVYMRLGEWVKAEVDCTLAIARDPSYAKAWLRRGTIRRQRGKRAEARKDLEEVL-----------RWGAGSMDGKVAREALALLHQMDEEGRACSQDGKDAVQGLRDE----------------------TSAPASTPSSCVPSGPRDR---EGSASKPEKGYPEATPRPVPLADISNETCSMEMPSLEAD--------FPPPLAEGFRRVPVVEGEAGRPSSIRALSTASPQAPREVSLPLHTLHPRASFPQEASGERMRPSNDTLVQTNVSSEGASGGGSAPVKGKRSRNGGPLRETLALKEMGNKALARGDLARAIQYYSEGIERDAGHLPLYNNRCLAYLRQGLWEEARRDASRVLESEPENIKARYRRGKAACRAAESRVARV--------------EEVLGSTAGAGESLKGDRDPTVPLEAAEKALTAALKDLDWILERDKKNTEAQKEQGVARLLLSKLQTM 667
BLAST of NO20G01360 vs. NCBI_GenBank
Match: XP_008614527.1 (hypothetical protein SDRG_10321 [Saprolegnia diclina VS20] >EQC32125.1 hypothetical protein SDRG_10321 [Saprolegnia diclina VS20]) HSP 1 Score: 67.0 bits (162), Expect = 3.300e-7 Identity = 84/249 (33.73%), Postives = 127/249 (51.00%), Query Frame = 0 Query: 22 ITTDLLDFDFIQNCDDPKVIRCILRRLQGRQDGVYPDLERETLDRLVLLSPTRVQAQVKALRAQPCPVEVAKEEEILQEWSDEMERKDAAMGMKRGVAVGSNRMRNEPGV--VVVESSSPPSRSARTIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAEKEIRDMSECLRHTPLSLRPLLAAQKKEDGNKLLKQGEYSEARAAYTLSLGHAPENAVVCANRAL 269 + ++LD+D+++ C D +++ IL LQ ++G YP LER T +L+ + P + +++ L++QP ++ E+ L W +MERK + + A + RN P V + + PS + + XXXXXXXXXXXXXXXXXXXXXXXXX ++ +S L L+ R + A +K GN+ K GE EA Y+ SL + P +A+V ANRAL Sbjct: 21 VDVEMLDYDYVEKCTDADLLKNILAVLQSGKEGKYPQLERATEAQLLKVLPKAERDRIERLQSQPSYSDIDSEKAALASWERDMERKLQRLDDE---AQRVSAPRNRPAVRGRAQPTDASPSPLIQEVTTSKAKKQAIPAYDWQSWEKYDVEAAEREXXXXXXXXXXXXXXXXXXXXXXXXXXMKEAQMPLSVDLDVLTLTEREVYALHEKTKGNECFKLGENDEAILYYSRSLAYDPTSAIVHANRAL 266
BLAST of NO20G01360 vs. NCBI_GenBank
Match: OQR82971.1 (hypothetical protein ACHHYP_15288 [Achlya hypogyna]) HSP 1 Score: 67.0 bits (162), Expect = 3.300e-7 Identity = 58/250 (23.20%), Postives = 101/250 (40.40%), Query Frame = 0 Query: 22 ITTDLLDFDFIQNCDDPKVIRCILRRLQGRQDGVYPDLERETLDRLVLLSPTRVQAQVKALRAQPCPVEVAKEEEILQEWSDEMERKDAAMGMKRGVAVGSNRMRNEPGVVVVESSSPPSRSARTIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAEKEIR---DMSECLRHTPLSLRPLLAAQKKEDGNKLLKQGEYSEARAAYTLSLGHAPENAVVCANRAL 269 + ++LD+D+++ C D ++++ IL LQ ++G YP LER T +L+ + P + +++ LR+QP ++ E++ L W +ME K + S R P V +SP + + + A ++ +S + + + R + A +K GN+ K GE EA Y+ SL + P NA+V ANRAL Sbjct: 21 VDVEMLDYDYVEKCTDVELLKNILAVLQSGKEGKYPQLERATEAQLLKVLPQSERDRIERLRSQPSYSDIDGEKQALASWERDMEAK--LRRFEEEAQHKSAVPRQRPAVRGRPQTSPAAPLVQEVMATTTATKKKQAIPAYDWRAWEKYDVEKAEAELDMEEVRKAEESRKQREELAAHAKRRQAEANMPISVDVENLTPTEREVYALHEKHKGNECFKLGENDEAILYYSRSLAYDPTNAIVHANRAL 268
BLAST of NO20G01360 vs. NCBI_GenBank
Match: CBJ31857.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 65.5 bits (158), Expect = 9.600e-7 Identity = 31/89 (34.83%), Postives = 53/89 (59.55%), Query Frame = 0 Query: 22 ITTDLLDFDFIQNCDDPKVIRCILRRLQGRQDGVYPDLERETLDRLVLLSPTRVQAQVKALRAQPCPVEVAKEEEILQEWSDEMERKDA 111 +T ++LD+DF+ C DP +IR I R+L+ ++G YPDL + RL+ P ++++ ++A+P P E+ + L W +EM R A Sbjct: 18 VTIEMLDYDFLDKCTDPGLIRAIARKLKSGEEGHYPDLVKHAETRLLEELPQAERSKILRMKAEPQPDEIHEAISDLHGWEEEMARVPA 106
BLAST of NO20G01360 vs. NCBI_GenBank
Match: OQS04908.1 (hypothetical protein THRCLA_20762 [Thraustotheca clavata]) HSP 1 Score: 65.5 bits (158), Expect = 9.600e-7 Identity = 74/251 (29.48%), Postives = 117/251 (46.61%), Query Frame = 0 Query: 22 ITTDLLDFDFIQNCDDPKVIRCILRRLQGRQDGVYPDLERETLDRLVLLSPTRVQAQVKALRAQPCPVEVAKEEEILQEWSDEMERKDAAMGMK----RGVAVGSNRMRNEPGVVVVESSSPPSRSARTIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAEKEIRDMSECLRHTPLSLRPLLAAQKKEDGNKLLKQGEYSEARAAYTLSLGHAPENAVVCANRAL 269 + ++LD++F+ C+D ++++ IL LQ ++G YP LE+ T ++L+ P + ++ ++ +P ++ E L W EME K + M+ A +R P E + + + + XXXXXXXXXXXXXXXXXXXX ++ +S L L+ R + A +K GN+ K GE A Y+ SL + P+NA+V ANRAL Sbjct: 19 VDIEMLDYEFVNKCNDVELLKNILAVLQSGKEGRYPHLEQATQNQLLKSLPKAERERIDRMQVKPTISDIDNERRALANWELEMENKSTQLEMEAQQVNKAARSRPAVRGRPNDTPQEKAPVKAPLIQELTEQTKTKKAIPAYDWRAWEKYDVEQAEKELELKEXXXXXXXXXXXXXXXXXXXXRLQEASMPLSVDLESLTLTEREVYALNEKNKGNECFKLGENDSALLYYSRSLAYDPKNAIVYANRAL 269
BLAST of NO20G01360 vs. NCBI_GenBank
Match: GAX94720.1 (Hypothetical protein PINS_002587 [Pythium insidiosum]) HSP 1 Score: 65.5 bits (158), Expect = 9.600e-7 Identity = 29/91 (31.87%), Postives = 57/91 (62.64%), Query Frame = 0 Query: 22 ITTDLLDFDFIQNCDDPKVIRCILRRLQGRQDGVYPDLERETLDRLVLLSPTRVQAQVKALRAQPCPVEVAKEEEILQEWSDEMERKDAAM 113 I D+LD+ F++ C+D ++ +L L+ ++G YP LE+ T DR++ L P + + +++ +RA P E++ E+E L W+ E++ K ++ Sbjct: 26 IHVDMLDYGFVERCNDLDELKGVLAMLRSGKEGRYPXLEKFTEDRILALLPEKERLKIQRMRATPSQEELSSEKEKLSSWTXEIDEKHRSL 116 The following BLAST results are available for this feature:
BLAST of NO20G01360 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 6
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO20G01360 ID=NO20G01360|Name=NO20G01360|organism=Nannochloropsis oceanica|type=gene|length=2643bpback to top protein sequence of NO20G01360.1 >NO20G01360.1-protein ID=NO20G01360.1-protein|Name=NO20G01360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=881bpback to top Synonyms
Publications
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