NO20G01340, NO20G01340 (gene) Nannochloropsis oceanica

Overview
NameNO20G01340
Unique NameNO20G01340
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2415
Alignment locationchr20:399712..402126 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:399712..402126 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO20G01340 vs. NCBI_GenBank
Match: EWM22100.1 (hypothetical protein Naga_100039g31 [Nannochloropsis gaditana])

HSP 1 Score: 68.6 bits (166), Expect = 3.700e-8
Identity = 32/37 (86.49%), Postives = 33/37 (89.19%), Query Frame = 0 
Query:    1 MRRLSDLVNPVLGFLSPWKGSAKATTSDPIPRASSSG 38
            MRRLSDLVNPVLGFLSPWKGS  +T SDPIPRASS G
Sbjct:    1 MRRLSDLVNPVLGFLSPWKGSKSSTPSDPIPRASSGG 37
The following BLAST results are available for this feature:
BLAST of NO20G01340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22100.13.700e-886.49hypothetical protein Naga_100039g31 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL023nonsL023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002668NSK002668Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G01340.1NO20G01340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|90603gene_6349Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100039g31gene8338Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G01340.1NO20G01340.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G01340 ID=NO20G01340|Name=NO20G01340|organism=Nannochloropsis oceanica|type=gene|length=2415bp
CCACCCGCCCACCACCCTCCATCACCACCATGCGACGATTGAGCGACTTG
GTAAACCCGgtaagtgcttggtcatggttttctggtttttggcgtatgta
ggcgcctacttggcacgttgcaaacgcgcctcatttggcgcgggcggccc
actttgcgtatgacttgtgtgtcgcaacgacgagtgacgcaggcaggagg
gacgcgtttagggggggggcaccacggtacagctctgtcagcatgctcag
ataagcaatgtcagtcttttttagtccactggggcaaagtgggtcaagca
ggcgagctgcgggccttatggcttgatatgatgcctgcagcgactacgac
agcacattttctgtgtgctgcacaagagcaaggcaatgcgcaggtggtat
caccaccaataagtgcgcgcgccttaacgctccatcatacgtgcccacgc
acaatcctatcccctgttaatcccctctctccctcgccctttccttccaa
tcatcgtgcactacgtacgccgtaagccatcaaaattggcttgggctcgg
atggtgtaattagccgtacacatttccaccctgttgtcacccttgttcag
acgtttcatcccgcccttgtcaccgaccgctcttttcctcccgcctcccg
cctactccacgcacagGTGCTTGGCTTCCTCTCCCCTTGGAAGGGCTCGG
CCAAGGCCACCACCTCCGACCCCATCCCCCGCGCCTCCTCCTCGGGCAGC
AAGAAACCCGCCCCCTCTGCAAGCAAAAAGGCCTCCAGCACGCCCGCTGC
TTCTGCTGCTTCCACTTTGGGGAAGCGTTCCCGTTCCTCCATTGGAAGCA
ACAAGGGTGAAACTCCTGCAGCGAAAAAAACACATCTTTCCTCGATCAAG
AAAAGCGCCCTGAAGAAGTCTGCGGCTAAGAGTGTGAAGAAGAGCAGCAT
CGCTACAACTCCCAAATCCAAGAGTAGCGCGATGAAGCCTCTCAAGTCTG
CGGCCAAGAAGGTGGCTACCCCTCTTGAGAGTGCTGCGAAGAAGCCCAAC
ACCCCCTCGGCAAGTAGCAAGAAGCCTGCCGCCACTGTCGCCCCCGCCGC
CCCTGCTTCACACAAGAAAAAGAGCGTAACAAAACCCGTGGTCAAGAAGG
CAGCGATGCCTGCTTTGgtacgtagaggcctatgaaagaattgtatcaag
taatgtctttgattttttcacagcagagcggcggtttttgccttgcttgt
cgatggtgaatagatctgtacatgtcctttctgtgcgtttgacatcttgt
ctctgatgtatgaacttgtccccgtttaatggagagaacgggctggtctc
ggggggtatggagggagaaggggttgaatcctgtccctgccgtatagtgt
gccggccacgtacctcggcggtgtcacgccgttttcataatcatggcgcc
cggccagctgtaagcgtgcggtaggacaagtctctcgccaacaggcaggg
tgaagtcaatttcttgcattcattcgtctacgcccctctttttcctcaat
ttcgtcatcagGTCGTGCCCCGTCAGCCGAGTGCCCGCGCTGCCAAGGCC
GCGAAGGCCCCTCCCGCCTCCACCACTACGGCGCCCGCGAGCAAGAAGGT
GGTGGCAAAGAAGGCAGCTGCCGCATCTGCGAGCAAGAAGGTGGTAGCTA
AGAAGGTGGCGGCGGCACCTGCGAGCAAGAAGTCGGTGGCTAAGAAGGTG
GCGGCCACACCCGCGAAGAAGGCGACCAAGCCGGCGCTGAAGAAGGCAGC
AGCCCCTAAGAAGTCTGCTGCGGTAGCTGgtacgttttccaagccctccc
aaaagcctgaatttgcgtgttcgtttatttactttttcccctccctttcc
ctgcctccttcacaccatcatgtccacagCGAAGGTGGCTCCCAAGAAGT
CCGCGCCTGCGAAGAAGGCAACTCGGCCAAGCCGCAAGTAAGGAGGAAGT
GGAGTGCGGGAAGGAGGGAGGGGAGAGCGATGAAAGGCAGAAGGTTGTGA
CTTGAGTAACGCGTGGTGTTTGGTGTGATTGTATTCGGCCGGCAGAGGTG
CACAAACAGGAGAAGAAAGAGGATTGAAATGGGGGAGGGAGAAAAAGACG
ATGTGTGGAAGACATCTCGAAGGGCAGGATACAGGCAGGCAAAGAAAGTG
TCCAAGTGTATGGGTAAACTGATAACGAGGGTGAGAAGGGGTATAAAAAT
GAAACATAAGAGAAAGAATATTTTCGTGTTTGTCGTGTGGATGAGTGGAT
GTATGAATAAGTTTGGTTGACACCAACGGCATGAGGAGAGGAGACGAGTG
ACGAAAAAAAGTCCCATAAAGCGTGCAATAAAAAGAGGAAGACAACAACA
ACAACAACAACAACA
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protein sequence of NO20G01340.1

>NO20G01340.1-protein ID=NO20G01340.1-protein|Name=NO20G01340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=287bp
MRRLSDLVNPVLGFLSPWKGSAKATTSDPIPRASSSGSKKPAPSASKKAS
STPAASAASTLGKRSRSSIGSNKGETPAAKKTHLSSIKKSALKKSAAKSV
KKSSIATTPKSKSSAMKPLKSAAKKVATPLESAAKKPNTPSASSKKPAAT
VAPAAPASHKKKSVTKPVVKKAAMPALVVPRQPSARAAKAAKAPPASTTT
APASKKVVAKKAAAASASKKVVAKKVAAAPASKKSVAKKVAATPAKKATK
PALKKAAAPKKSAAVAAKVAPKKSAPAKKATRPSRK*
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Synonyms
Publications