NO20G01250, NO20G01250 (gene) Nannochloropsis oceanica

Overview
NameNO20G01250
Unique NameNO20G01250
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2946
Alignment locationchr20:381227..384172 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:381227..384172 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO20G01250 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL023nonsL023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002656NSK002656Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G01250.1NO20G01250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G01250.1NO20G01250.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G01250 ID=NO20G01250|Name=NO20G01250|organism=Nannochloropsis oceanica|type=gene|length=2946bp
AACAAAAAAGAGCACGCAGTCAACTGATTTGCATATTACCCCCCCTGGTA
GATGGGTAGATGAGGTCGTGCCTGATTGTATGTTACTGGAAAATTAGACC
CGAAACCAGCAATTTGCTAAAGCAAATAGCATAATCATCATTGTTTCCTA
GACGACCAGATTCTCAAGGTGCATTTCCAGGTTGAAACTAGTACCTGAAT
CGGTGTGTGTTGGGAGGTCGACAGAACTGTGACGGTCACCACACATAAAA
TAATAATTATCTCCCCACTCACGCCCCCACCTTGTACCAGACACCCACCT
CACTGGCAGCGTCCACAAATCTATGGAATTCTCGTCCGCTGTCACCTCGG
CCACCGCCGCCGCGGGGACACGGGTGCAGAAATTGTGTAATAGGTATGAA
CAAGACTTGTCAGTCGCGTTCCCCTTGCAAGCCCTCCAGCCGGTCGTCGG
AAGCGAAGCGGGAAACGCTGCCGCACCCGCCTCCAGCAACGGCACCAGGA
CTCTAACATCGTCCAGTTGGCTTACGGATGAGGCCTACCAGACGTATTCG
GTGCGGGGGGGCACGGATAAATGGCGGGATAATCTGCGGCGGAGGGTGGA
GATGCACAAGTTCCAAAGCATGCACGGGGAGAGTGAACTGGTCAAGGCCA
TCATGCAGACACGCGGTCGGAGTGGCACTGGGAATATGGGGGGGAAGGGC
GGTGGTGGTGGGGGGAATAAGGTGGAATGGAAGCACGAGCAGCACGGCGG
TGCTAGTGGTGGTGGGAGGGGGGGAGGGAAGCGACGGCGTGGATGGGAGC
AACGCAGTGTGAACTTGTATGGCGGAGGACGGGGCGAGAAAGGAGGCCCA
CAAAGGCAAGACGACGACCAATACGACGAGGACAGTGGGCTACCAGGAGC
AGGGGGAGGAGAAATGGCGATGGGACGTCTTATTAAATTGGGCCCTGTGG
CGAAGCTGCGCAATTCGTCGTTGACCTTACAAGAGCACAAAACCTTCCAA
GCCCTCTCCCGAAAGCAATTTCGCTACGATCAACAGCTGGACATGGACGC
CCGTCCCCTCACTGCAGAGGAACGACAGACGCTCGAGAAACTGGCGCCCC
TGGTTCGCGCCGAGCAAGCTAAATACGGGGAGCTATTGAGTAAGTGGAAG
GAAAGCGGGCGTGCTCCTTACAAGATGCTGGAAAAACACGTCGGGCCTCA
TGTGGATGCTTACTTGCAAGCAATGCGATTGCATCAACTTGCCAGCATCC
CACAATACTACCAGATGCATTTCAAGAGCCCTTTGAAGCCGGAGGAAGGG
CTTGGGGAGAGAATGGAGCCTGCCTTTATTGGCGGGATCAAGGCCGCGGA
TGTTTTGAAGAAGAGGGTGCATGTGCCTCCTTTGCCTGTCGACGTGGGTC
ATGTCAAGGAGGATAAAAGAGAGGACAAAGACAAGGAGGAGGAAGAGGAA
AAAGAAAAGGAAAAAAAGGACAAGGACAGCAGCGACAGCAGTACAGTAGA
AGCCGCTGCTGCCCCTTCTCCTGCGTCCTCCTCCTTCTCCGAGAGAGGCC
TACACTGGTCTCCACGCGATGCCCGCCGATGGGACAGAATGGCAAAATGG
GGAAAAAAAGATTATGTTTTTGAAGAAGGGGATATACTAGTCGACTTCCG
TACCCTCCTTACGCTTGCCGATCCAAGCACTGCCTGGATGATTCCCTTTT
CAGTGCAGACAGTCGGAGGGAAGGGCGAGGGAGGGAAAGAGGGAGGGAGG
GAGGGAGGAAAGAAGGTGTTGGTTATGCTTACCCCTTTGTTGCCCCCCAC
AATGAGTTGGAGGGAGAGGGCGGAGCTTTTCTATCAGGAGGTGGTGCCAC
AGCAACTAGCCGTGACCAGAGGGGAGGAGGGGAGGAGGGAAAAAGGAAAG
GAGGAAGGGGAGGAGGAGGAGGAGGACCGGACTTTGTCCTTGGAAGCATG
GCAGCTGGCTCAGCTTAAAGTGGTGGTTGCCTCCGACCGGGTGGCGCTGA
GCATGGCAGGAGCCGAAGTAGGGGGAAGAGGAGAAGCAGGAGCAGGAGCA
GGAGCAGGAGCAGGAGCAAGAGCAGGAGCAGAAGCAGAAAAACACGCGGG
AGTGGCAGCAGCAGGACCAGAAGGTGAAGAAGGAGAAGGTTTGGAAGCGC
TTTTGTCAGTCGAAGTCGACTATACCCTCGAGTGGAGCGAAGAAGAAGCA
CGCTACCCCCACGGCCTAATCCGCCACCTTCTATTCAATTGGGTGGCCGG
GCACGCCTCCCCGTACCTTGCGATAGTCGACGGGAAGAACCGCACTCTGG
CCAAGGTGATAGACAGGCGGGAGATGCCCGGATGGCTGCAATGGCAGGGG
GAGGGAAGGGCGGCATGGGCCATGGGAGAGGTGGTGACCAGGCTGGTTCA
TATCTTGGGGTTGCTGCACAAACAGGCCGAGGGGGACTTTGTCGTGAAAC
ATGACCCGGAAGAGAAGGAGATGGTGGTCTATCATCATATCCCGGGGTGG
GAGGGGGGGGGGGGAGGGAGGGGGCGAGGGAGGGTTGGATTTGCATGCGT
ACATACGGGCATCGGGGAAGGCGGAGGAGAAGGCGGCGGGCGCTTGGAGG
GTGTGGAAGTGGTCCTCAGTCGAACAACACATACCAGGAACCTTCGTACC
CCGCTAGGGAGCCGTTGGCTGTCTTTCCATCCTTCCCGACCCTCCTCCCT
CCCTCCTTTGTGACTGGTTTTGGGAAGGAGGGATAGAAGCAGGAAAATAG
GGAAAGAGGGGAATGAAATGTGTGAAGAAGATGGGTGAGGCAATGGATGA
AGCACATTTTTGCCACGGTAGGGAGGGAGAAGGGAAGGAGAGAGGCGGAA
AGGGGGAAAGGAAGGTGAGATGAGAGACGAAAACACCGGATGGAAAAGCA
TTGACGACGCAACATATTTGTGAAATTGATGATGCAACAACAAGTA
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protein sequence of NO20G01250.1

>NO20G01250.1-protein ID=NO20G01250.1-protein|Name=NO20G01250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=797bp
MEFSSAVTSATAAAGTRVQKLCNRYEQDLSVAFPLQALQPVVGSEAGNAA
APASSNGTRTLTSSSWLTDEAYQTYSVRGGTDKWRDNLRRRVEMHKFQSM
HGESELVKAIMQTRGRSGTGNMGGKGGGGGGNKVEWKHEQHGGASGGGRG
GGKRRRGWEQRSVNLYGGGRGEKGGPQRQDDDQYDEDSGLPGAGGGEMAM
GRLIKLGPVAKLRNSSLTLQEHKTFQALSRKQFRYDQQLDMDARPLTAEE
RQTLEKLAPLVRAEQAKYGELLSKWKESGRAPYKMLEKHVGPHVDAYLQA
MRLHQLASIPQYYQMHFKSPLKPEEGLGERMEPAFIGGIKAADVLKKRVH
VPPLPVDVGHVKEDKREDKDKEEEEEKEKEKKDKDSSDSSTVEAAAAPSP
ASSSFSERGLHWSPRDARRWDRMAKWGKKDYVFEEGDILVDFRTLLTLAD
PSTAWMIPFSVQTVGGKGEGGKEGGREGGKKVLVMLTPLLPPTMSWRERA
ELFYQEVVPQQLAVTRGEEGRREKGKEEGEEEEEDRTLSLEAWQLAQLKV
VVASDRVALSMAGAEVGGRGEAGAGAGAGAGARAGAEAEKHAGVAAAGPE
GEEGEGLEALLSVEVDYTLEWSEEEARYPHGLIRHLLFNWVAGHASPYLA
IVDGKNRTLAKVIDRREMPGWLQWQGEGRAAWAMGEVVTRLVHILGLLHK
QAEGDFVVKHDPEEKEMVVYHHIPGWEGGGGGRGRGRVGFACVHTGIGEG
GGEGGGRLEGVEVVLSRTTHTRNLRTPLGSRWLSFHPSRPSSLPPL*
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Synonyms
Publications