NO20G01240, NO20G01240 (gene) Nannochloropsis oceanica

Overview
NameNO20G01240
Unique NameNO20G01240
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1653
Alignment locationchr20:379574..381226 +

Link to JBrowse

Properties
Property NameValue
DescriptionrRNA processing
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:379574..381226 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013730Fyv7/TAP26
Homology
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BLAST of NO20G01240 vs. NCBI_GenBank
Match: EWM22084.1 (rRNA processing [Nannochloropsis gaditana])

HSP 1 Score: 75.9 bits (185), Expect = 2.400e-10
Identity = 80/239 (33.47%), Postives = 100/239 (41.84%), Query Frame = 0 
Query:   55 ISLERFAGGKRWTGSDKITKKEREFVHKKALLKSYHKLLKKEGFEPSSNSSSVKNARSGSIIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPFLRARQQALEKRHXXXXXXXXXXXXXXXXXXXXXIRKARHALMSRKTKKGQPIMKTRISNILEKLKKESK 294
            IS+E FA GKRWT S K+T+KE+EF+HKKALLKSY KLLKKEGF PS +++        S++                                                                                                          PF RARQ AL K+      XXXXXXXXXXXXXXXX    RH L+S+ T++GQPIMKTRI  IL++L++E +
Sbjct:   54 ISVEHFAAGKRWTKSQKVTRKEKEFIHKKALLKSYRKLLKKEGFGPSLSTAQESGPGGMSLV----------------PEGPLGEVSGGKRRLPPEIEKIGTEDEGLERCDTGPGRGELRKRTRMEAEESDGDSGGPPAAYRGDGGSSPQPGPARLRKGLKGTKAKPDPFARARQHALAKKEEAEEEXXXXXXXXXXXXXXXXXXXERHVLLSKTTRRGQPIMKTRIHGILDRLEREGR 276
The following BLAST results are available for this feature:
BLAST of NO20G01240 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22084.12.400e-1033.47rRNA processing [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL023nonsL023Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002655NSK002655Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G01240.1NO20G01240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594646gene_6337Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100039g41gene8331Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G01240.1NO20G01240.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G01240 ID=NO20G01240|Name=NO20G01240|organism=Nannochloropsis oceanica|type=gene|length=1653bp
ATGGTTATGTGCTTGTCACTCTGTGAATATGTGCGCGGAGTGTGCGAAGG
AGCGGTGGGATGGGTGAGATGCGACGCGAGATGACGACGTCTAGGATGCA
TGCTAAAACGCATAGGAAGGCAGTAAGAGGCTATCATCACAACCATGCTC
GAGGCGACACAACACTCACATTTCTTATTCTCTTTTTGGATCAAACGAGG
CCCGTCTGATGTGTGCGGTGGTCGCCATCGTAAGTGAGCGCCGCGCATTT
CCAAGAGAAGATACTCGCGGCGTTGCTTCTTCGTCTTCGACCTCCCACCC
CTCGTCCACTCCCTCTATTTTGTTAATAACAAACGTACGCATCAGCGAGT
CCAGCACATGTACATGCTTGCGGGACAAACTTTTATGTGTGGACAATGCA
CTGGGTATGCTGGGGCTCGTTCATTTTGCCTGCACTTCTCAAAGAAATCG
CACAATCTCGTGACTTTCGCATTTCTATTTCCTTGGCCCACACGACAGGC
AAGTAAGCAGGCATGCGAGGCAAGCAAGGAGGAGGACGCGGGCGGACCTG
GTCCCCAAGGGGCAGCAGCTCTAGGGGAGGACGAGGCAGCTTTACAGGTA
GAGGCAGTGGCCGAAGAGGCGGTGGCCGTGGTGGTAGTGGGAAGAGGGTA
CCTGGTGGGAGGGTGGGAGGAGGCATCAGTCTGGAGCGTTTTGCGGGTGG
CAAGCGGTGGACAGGCAGTGACAAGATAACCAAAAgtaagtttagatgga
cgattgtgaacggaaaatgggaaagggaagggggagatgtattgtccgct
tgcttgttggccccctgcctctaaacgcatctcccatccctcccttcttc
ctagaccatacactacgtctgcctggcttccatccatcactcacaatttt
acacccatatcactctactcttacagAGGAAAGAGAATTTGTGCACAAGA
AGGCCCTACTCAAATCTTACCACAAGCTGTTAAAAAAAGAAGGCTTTGAA
CCCTCCTCTAACTCCTCATCTGTCAAGAATGCCAGAAGTGGCAGCATCAT
CAGGAAGAGCAGCGATAGCAGCAACAGCAGCAGCTATGCGCAGAGAATGC
AGACGATTAATTACTCTCAAGACGAAGATAAGGAGAAAGAGGAAGAGGAG
GAGGACGAGGAAGAGGAGGAGGAAGAGGACGAGGAAGGGGCTAGGGAGTC
GTCACATGACGACAAGATGGATGGACGTAGGCGCGTCTACGAAGAGGCCA
AGGAGAAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGATCATCAGTCCCGAAAGAG
AAAGAAGGCAAAACCGGACCCGTTCCTCCGTGCGCGGCAACAAGCACTGG
AGAAGCGCCACGAGTACGAAGCAGAGATACAGCGTCACAGAGAGAAAGTC
CAAGCAAGAGAGAAGAGCATGAAAATTCGCAAGGCCCGGCATGCATTGAT
GAGTAGAAAGACGAAGAAAGGGCAACCGATCATGAAGACGAGGATAAGCA
ACATCTTGGAGAAGTTGAAGAAGGAGTCGAAACAGCCGCGGCAGCAGCTG
CAGCGCTGAGAGAGGAGAAAGAAAGAAATAAGCACAAGTGTACATACGAT
GAT
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protein sequence of NO20G01240.1

>NO20G01240.1-protein ID=NO20G01240.1-protein|Name=NO20G01240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=302bp
MRGKQGGGRGRTWSPRGSSSRGGRGSFTGRGSGRRGGGRGGSGKRVPGGR
VGGGISLERFAGGKRWTGSDKITKKEREFVHKKALLKSYHKLLKKEGFEP
SSNSSSVKNARSGSIIRKSSDSSNSSSYAQRMQTINYSQDEDKEKEEEEE
DEEEEEEEDEEGARESSHDDKMDGRRRVYEEAKEKEEEEEEEEEEEEEEE
EEEEEEEEGDHQSRKRKKAKPDPFLRARQQALEKRHEYEAEIQRHREKVQ
AREKSMKIRKARHALMSRKTKKGQPIMKTRISNILEKLKKESKQPRQQLQ
R*
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Synonyms
Publications