NO20G01170, NO20G01170 (gene) Nannochloropsis oceanica

Overview
NameNO20G01170
Unique NameNO20G01170
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length970
Alignment locationchr20:360910..361879 +

Link to JBrowse

Properties
Property NameValue
DescriptionTim10-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:360910..361879 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0045039protein import into mitochondrial inner membrane
GO:0016043cellular component organization
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0042721TIM22 mitochondrial import inner membrane insertion complex
GO:0016020membrane
GO:0005739mitochondrion
Vocabulary: INTERPRO
TermDefinition
IPR035427Tim10-like_dom_sf
IPR037376Tim10/12
IPR004217Tim10/DDP_fam_Znf
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Homology
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BLAST of NO20G01170 vs. NCBI_GenBank
Match: EWM22130.1 (tim10-like protein [Nannochloropsis gaditana])

HSP 1 Score: 110.9 bits (276), Expect = 2.300e-21
Identity = 75/81 (92.59%), Postives = 78/81 (96.30%), Query Frame = 0 
Query:   21 LKMAKAEVKMYSDLFNKMCSLCFEKCVSRYNDTDLNLGEMSXXXXXXXXXXXXXXXXXXXLKNFEETAKQQQQAQGVMPPS 102
            LKMAKAEVKMYSDLFNKMCSLCFEKCV+RYNDTDLNLGEMSXXXXXXXXXXXXXXXXXXXLKNFEE AKQQQQAQ  +PP+
Sbjct:   21 LKMAKAEVKMYSDLFNKMCSLCFEKCVARYNDTDLNLGEMSXXXXXXXXXXXXXXXXXXXLKNFEEQAKQQQQAQAGIPPA 101
The following BLAST results are available for this feature:
BLAST of NO20G01170 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22130.12.300e-2192.59tim10-like protein [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002646NSK002646Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G01170.1NO20G01170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594615gene_6330Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Tim10gene8322Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G01170.1NO20G01170.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G01170 ID=NO20G01170|Name=NO20G01170|organism=Nannochloropsis oceanica|type=gene|length=970bp
CCTGACCCCCCCTCACCCCACTTTTCTCACACGCAGACTACGCAAGCAAC
CTTAGCACCACCGACAGGCAGCATGAGCAGCTTTTTTGGGGGCGGAGGTG
GCAGTCAGCCTCCTTCGGCGAGCAATCAGCAGCTAAAGATGGCCAAGGCC
GAGGTCAAGATGTACTCGGACCTATTCAACAAgtaagaaggcccgtgtgt
gttgctgtgctttgcgggcgtgcattctcccttcccggccgcggctctct
tttatttacttctatccatctttttaattctcactgtccatcatgtctat
aacgcgctcgtccctctgaacagcagcgtggacgcagtccctaacccctc
tccctctcttcctttcctgcctgccctccatcccaacagGATGTGCTCCC
TCTGCTTCGAAAAATGCGTATCTCGATACAACGACACAGATCTTAACCTA
GGTGAGATGTCATGCGTGGACCGATGCGTGGGGAAGTACCTAGAGTCACA
CATGAAGGTGGGGGAGGTCCTGAAGAACTTCGAGGAGACTGCCAAACAAC
AACAGCAAGCGCAGGGAGTAATGCCACCTTCCGGTTGAAAAAATCGATGA
AGCGCAAAAGCAGGAGCGGCAATGGGAGCAAGGAGAAAGAGGAGTAGGAT
CTGGGGTTGTACATGTAGGGAAGTGGGGAGGAAGAGAGGACTTGCGGGTG
GTAGGGAAGGGTGTAGACACACAATCAGTCGAGGTGAGAGCGAGAGTGAG
GAATGAGAAGCGGCACTGTGTGTGTGCGAAAGAGAGAGAGCTAGTGTAGG
AGGGAATGATAATAATAAGGGTAAATGAGAAGGTATGGAAGCAGGATTTC
CCCCCTCCTTTGAGTACGAGAGCAAAGAAGGCTCTTGGAAGGAGCAGCAG
GCAATAGGAGCAGAAGCAGAAGCAGCAGTGATTTCCACCAACAAAGAAAG
TAGTCACACACTCTCGAAAA
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protein sequence of NO20G01170.1

>NO20G01170.1-protein ID=NO20G01170.1-protein|Name=NO20G01170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=103bp
MSSFFGGGGGSQPPSASNQQLKMAKAEVKMYSDLFNKMCSLCFEKCVSRY
NDTDLNLGEMSCVDRCVGKYLESHMKVGEVLKNFEETAKQQQQAQGVMPP
SG*
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Synonyms
Publications