NO20G01140, NO20G01140 (gene) Nannochloropsis oceanica

Overview
NameNO20G01140
Unique NameNO20G01140
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2120
Alignment locationchr20:355403..357522 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:355403..357522 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029063SAM-dependent_MTases
IPR019410Nicotinamide_N-MeTfrase-like
Homology
BLAST of NO20G01140 vs. NCBI_GenBank
Match: XP_012205300.1 (hypothetical protein SPRG_10676 [Saprolegnia parasitica CBS 223.65] >KDO23979.1 hypothetical protein SPRG_10676 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 83.6 bits (205), Expect = 2.300e-12
Identity = 84/382 (21.99%), Postives = 146/382 (38.22%), Query Frame = 0
Query:   79 VSELLSIMRLLILCCQDTESAVGVGLFGLHPWIKRVLASDNEEEGQEDDEATEVLREYAEEIASRCARVRGGFPLQRLALCSDSAFSSLHLPVRVPIYSHFRTTTITHAQNHQPGKENESKDLIVLISPIAYRMSSQADTGYFLWPAATILTRFILINSSFFAGKRVMEIGAGLGLCGLVAGRVAKEVLLTDHNLACVRQMQEHVRLNRDDGIGGWEEDRVTSNEGEAAAEAGSAGATLGATVALVHPSTMKVRWLDWDRLEAVSKFTWQVSEKAEEKGIRGGREEEEGAKSEVDEEYDRKENADYHCVSEEEIESFGRPRWSSGLLDVVIGSDCICDEPSAVGVARLLSLTLKPGTGVGYITAPAPQHRYGVHALPRELEA 461
            ++ +  I+ L+     D ++ V     G+H  + ++L  ++           E++++ A  +   C+  +            +++F    LP+  P     R   +  A    P    + +D +VLI  +  RM+ Q  TGY LW AA IL R++ +N   F  + V+E+G+GLGL G+VA   ++++ +TD+    +  +Q +V LN D                          AT  + V++ H        LDWD L+                                                            S+  +D+V+ SD IC+  +A G A ++   LKP  GV Y+       R+GV  L + L A
Sbjct:   68 IARMHEILMLVADVIMDEDNCVHAAQLGMHFVLMKLLMHEH-----------ELIQDGASAVVVNCSSKKAN------TSGVNTSFPFKTLPLEPPT----RAWPLLQA---LPADARDEEDQVVLIRAVKTRMTGQPKTGYLLWGAAVILARWVHLNRELFHERSVLEVGSGLGLSGIVAAAYSQQMTMTDYQQDTLDALQYNVDLNFD--------------------------ATATSHVSMEH--------LDWDHLDL-----------------------------------------------------------SAPKVDIVMASDIICEPSTAEGFANVVRHRLKP-NGVAYLVNATSHSRFGVLHLQKLLLA 331          
BLAST of NO20G01140 vs. NCBI_GenBank
Match: OQR93143.1 (hypothetical protein ACHHYP_02848 [Achlya hypogyna])

HSP 1 Score: 83.6 bits (205), Expect = 2.300e-12
Identity = 58/232 (25.00%), Postives = 107/232 (46.12%), Query Frame = 0
Query:   55 FLEAGGVKALVELLKTHGFDRPIPVSELLSIMRLLILCCQDTESAVGVGLFGLHPWIKRVLASDNEEEGQEDDEATEVLREYAEEIASRCARVRGGFPLQRLALCSDSAFSSLHLPVRVPIYSHFRTTTITHAQNHQPGKENESKDLIVLISPIAYRMSSQADTGYFLWPAATILTRFILINSSFFAGKRVMEIGAGLGLCGLVAGRVAKEVLLTDHNLACVRQMQEHVRLN 287
            FLE   +K L    K+   +  + ++ +  ++ ++    +D ++ V     G+H  + +++  ++           E+++E A  +   C+  +            +++F    LP+  P       T         P    +  D +VLI  +  RM+ Q  TGY LW AA IL R++ +N   F G+ V+E+G+GLGL G+VA   ++E  LTD+    +  +Q +V LN
Sbjct:   45 FLEY-AMKELSAFAKSRAQNDEVTIALIHRLLLVVATVIEDEDNCVHAAQLGMHFVLMKLMMHEH-----------ELIQEGAAAVVVNCSSKKAN------TTGINTSFPFKTLPLEPP-------TRAWPLLQVLPVDNRDKDDQVVLIRAVKTRMTGQPKTGYLLWGAAVILARWVHLNRQLFEGRSVLEVGSGLGLSGIVAAAYSQETRLTDYQQDTLDALQYNVDLN 251          
BLAST of NO20G01140 vs. NCBI_GenBank
Match: XP_009515609.1 (hypothetical protein PHYSODRAFT_537041 [Phytophthora sojae] >EGZ28334.1 hypothetical protein PHYSODRAFT_537041 [Phytophthora sojae])

HSP 1 Score: 82.4 bits (202), Expect = 5.200e-12
Identity = 63/222 (28.38%), Postives = 102/222 (45.95%), Query Frame = 0
Query:   80 SELLSIMRLLILCCQDT----ESAVGVGLFGLHPWIKRVLASDNEEEGQEDDEATEVLREYAEEIASRCA----------RVRGGFPLQRLALCSDSAFSSLHLPVRVPIYSHFRTTTITHAQNHQPGKENESKDLIVLISPIAYRMSSQADTGYFLWPAATILTRFILINSSFFAGKRVMEIGAGLGLCGLVAGRVAKEVLLTDHNLACVRQMQEHVRLNR 288
            SE L+I   ++L   +T    ++A  +   G HP + R++ ++NE+           ++E A E+ + C           RVR    ++RL             P  VP+             N    ++     L VLI  +  RM+ Q  TGY LW AA +L R+I  +   F  K V+E+G+GLGL G+VA R A++  LTD+       ++ +V+LN+
Sbjct:   75 SEDLAITHEMLLLLAETVVDEDNATFIARIGAHPLLMRLMENENED-----------IQEAAAEVVTSCTSSPSAITFPHRVRQVGEVERL------------WPRAVPL-------PFDPRDNAPKNEDGSQGTLEVLIRQVPTRMTGQRKTGYLLWGAAFVLARWIHKHRELFEDKSVIEVGSGLGLGGIVAARYARQTTLTDYQSDTCTALEYNVQLNK 266          
BLAST of NO20G01140 vs. NCBI_GenBank
Match: POM65787.1 (Hypothetical protein PHPALM_18446 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 82.4 bits (202), Expect = 5.200e-12
Identity = 62/213 (29.11%), Postives = 96/213 (45.07%), Query Frame = 0
Query:   85 IMRLLILCCQDTESAVGVGLFGLHPWIKRVLASDNEEEGQEDDEATEVLREYAEEIASRCA----------RVRGGFPLQRLALCSDSAFSSLHLPVRVPIYSHFRTTTITHAQNHQPGKENESKDLIVLISPIAYRMSSQADTGYFLWPAATILTRFILINSSFFAGKRVMEIGAGLGLCGLVAGRVAKEVLLTDHNLACVRQMQEHVRLNR 288
            I+ LL     D ++A  V   G H  + R++  DNE+           ++E A E+ + C           RVR    ++R+             P  VP+    R   + +A   Q         L VLI  +  RM+ Q  TGY LW AA +L R+I  +   F G+ V+E+G+GLGL G+ A R A+   LTD+       ++ +V+LN+
Sbjct:   84 ILLLLAETVVDEDNATFVARIGAHSLLLRLMEHDNED-----------IQEAAAEVVAACTSSPSAITFPHRVRQVGEVERM------------WPREVPLPFDPRDNALKNADGSQ-------STLSVLIRQVPTRMTGQRKTGYLLWGAAFVLARWIHKHRDLFVGRSVLEVGSGLGLGGVTAARYARHTTLTDYQADTCTALEYNVQLNK 266          
BLAST of NO20G01140 vs. NCBI_GenBank
Match: XP_024572818.1 (Predicted methyltransferase [Plasmopara halstedii] >CEG36449.1 Predicted methyltransferase [Plasmopara halstedii])

HSP 1 Score: 76.6 bits (187), Expect = 2.900e-10
Identity = 60/204 (29.41%), Postives = 88/204 (43.14%), Query Frame = 0
Query:   85 IMRLLILCCQDTESAVGVGLFGLHPWIKRVLASDNEEEGQEDDEATEVLREYAEEIASRCARVRGGFPLQRLALCSDSAFSSLHLPVRVPIYSHFRTTTITHAQNHQPGKENES-KDLIVLISPIAYRMSSQADTGYFLWPAATILTRFILINSSFFAGKRVMEIGAGLGLCGLVAGRVAKEVLLTDHNLACVRQMQEHVRLNR 288
            I+ LL L   D + A  +   G HP + R++     E G ED      + E A ++ + C                +       L   +P+            ++  P   +ES   L VLI  +  RM+ Q  TGY LW AA IL R+I  +   F  K V+E+G+GLGL G+ A R A    LTD+       +  +VRLN+
Sbjct:   83 ILLLLALTVVDEDHATYIARIGAHPLLMRLM-----EHGNED------IEEAAAKVVTACTSSPSAVTFPHRVREIEEVELLWPLAALLPL----------DPRDDVPKSADESTSTLQVLIRQVPTRMTGQNKTGYRLWGAAFILARWIHKHRDMFVNKSVLEVGSGLGLGGITAARYANHTTLTDYQSDTCSALSYNVRLNK 265          
BLAST of NO20G01140 vs. NCBI_GenBank
Match: GAX20907.1 (hypothetical protein FisN_1Lh439 [Fistulifera solaris])

HSP 1 Score: 75.5 bits (184), Expect = 6.400e-10
Identity = 40/96 (41.67%), Postives = 58/96 (60.42%), Query Frame = 0
Query:  198 SKDLIVLISPIAYRMSSQADTGYFLWPAATILTRFILINSSFFAGKRVMEIGAGLGLCGLVAGRVAKE-------VLLTDHNLACVRQMQEHVRLN 287
            S+ + VLI  +  R S+Q D G+ LWP+A IL+R+++   S   GKRV+EIGAG GL GLVA  + +        V+LTD N   +  +Q ++ LN
Sbjct:   41 SQSVQVLIHQVTDRQSAQEDVGFVLWPSALILSRWLVTEPSVLEGKRVLEIGAGCGLTGLVAALLQQRCSNKNSCVVLTDFNATVLNNLQRNINLN 136          
BLAST of NO20G01140 vs. NCBI_GenBank
Match: XP_002286806.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED96447.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 75.1 bits (183), Expect = 8.300e-10
Identity = 63/226 (27.88%), Postives = 103/226 (45.58%), Query Frame = 0
Query:   81 ELLSIMRLLILCCQ----DTESAVGVGLFGLHPWIKRVL--------ASDNEEEGQEDDEATEVLREYAEEIASRCARVRGGFPLQRLALCSDSAFSSLHLPVRVPIYSHFRTTTITHAQNHQPGKENESKD--LIVLISPIAYRMSSQADTGYFLWPAATILTRFILINSSFFAGKRVMEIGAGLGLCGLVAGRVAKE------VLLTDHNLACVRQMQEHVRLN 287
            E+ ++ RLL L  +    D+     +G  G    I R+          S+++   +ED +A   L++   EI S C R                AF+   L  R+P+  +    +I          +NE  D    VLI+ +  R S+Q D G+ +WP+A +L+R++L N      K V+EIGAG  L G+VA  + KE      +L+TD N   +  + +++ LN
Sbjct:  122 EIKALQRLLDLLVRVSLLDSTLGEEIGRSGSQSIISRIFEQLKQCISISESDGSCEEDLDALMDLQDAVCEIYSPCIR--------------GMAFTDDELRRRLPLIYNLTPVSI----------DNEEPDEYTTVLINQVTKRQSAQIDVGFVMWPSAIVLSRWLLSNRHVLKDKNVLEIGAGCALTGIVAASLMKEDNTTQQILITDFNDTVLENISQNIHLN 323          
BLAST of NO20G01140 vs. NCBI_GenBank
Match: XP_004353780.1 (hypothetical protein DFA_12143 [Cavenderia fasciculata] >EGG14371.1 hypothetical protein DFA_12143 [Cavenderia fasciculata])

HSP 1 Score: 73.6 bits (179), Expect = 2.400e-9
Identity = 32/75 (42.67%), Postives = 53/75 (70.67%), Query Frame = 0
Query:  212 MSSQADTGYFLWPAATILTRFILINSSFFAGKRVMEIGAGLGLCGLVAGRVAKEVLLTDHNLACVRQMQEHVRLN 287
            +++Q  TG   WPAA+IL  FI IN++ F  K+V+E+G G+G+CGLVA +    +L+TD +L+ + Q+ +++ LN
Sbjct:   73 INTQPSTGLLPWPAASILFNFIAINNNLFNNKKVLELGTGVGVCGLVASKFCASILMTDGDLSTLGQLSDNLDLN 147          
BLAST of NO20G01140 vs. NCBI_GenBank
Match: CBJ33500.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 72.0 bits (175), Expect = 7.000e-9
Identity = 33/66 (50.00%), Postives = 45/66 (68.18%), Query Frame = 0
Query:  197 ESKDLIVLISPIAYRMSSQADTGYFLWPAATILTRFILINSSFFAGKRVMEIGAGLGLCGLVAGRV 263
            + + + VL+ P+  R  SQ D G+ +WPAA IL+R +  N S   G+RV+EIGAGLGL GLVA R+
Sbjct:  143 DGERISVLVRPVKQRQHSQCDVGFVMWPAAIILSRLLCRNPSLVRGRRVLEIGAGLGLAGLVAARI 208          
BLAST of NO20G01140 vs. NCBI_GenBank
Match: GAX14245.1 (hypothetical protein FisN_1Hh439 [Fistulifera solaris])

HSP 1 Score: 71.2 bits (173), Expect = 1.200e-8
Identity = 38/91 (41.76%), Postives = 54/91 (59.34%), Query Frame = 0
Query:  203 VLISPIAYRMSSQADTGYFLWPAATILTRFILINSSFFAGKRVMEIGAGLGLCGLVAGRVAK-------EVLLTDHNLACVRQMQEHVRLN 287
            VLI  +  R S+Q D G+ LWP+A IL+R+++       GKRV+EIGAG GL GLVA  + +        V+LTD N   +  +Q ++ LN
Sbjct:  193 VLIHQVTDRQSAQEDVGFVLWPSALILSRWLVTEPFVLEGKRVLEIGAGCGLTGLVAALLQQRYSNKNGSVVLTDFNATVLNNLQRNIDLN 283          
The following BLAST results are available for this feature:
BLAST of NO20G01140 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_012205300.12.300e-1221.99hypothetical protein SPRG_10676 [Saprolegnia paras... [more]
OQR93143.12.300e-1225.00hypothetical protein ACHHYP_02848 [Achlya hypogyna... [more]
XP_009515609.15.200e-1228.38hypothetical protein PHYSODRAFT_537041 [Phytophtho... [more]
POM65787.15.200e-1229.11Hypothetical protein PHPALM_18446 [Phytophthora pa... [more]
XP_024572818.12.900e-1029.41Predicted methyltransferase [Plasmopara halstedii]... [more]
GAX20907.16.400e-1041.67hypothetical protein FisN_1Lh439 [Fistulifera sola... [more]
XP_002286806.18.300e-1027.88predicted protein [Thalassiosira pseudonana CCMP13... [more]
XP_004353780.12.400e-942.67hypothetical protein DFA_12143 [Cavenderia fascicu... [more]
CBJ33500.17.000e-950.00conserved unknown protein [Ectocarpus siliculosus][more]
GAX14245.11.200e-841.76hypothetical protein FisN_1Hh439 [Fistulifera sola... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002643NSK002643Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G01140.1NO20G01140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|90113gene_6327Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G01140.1NO20G01140.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G01140 ID=NO20G01140|Name=NO20G01140|organism=Nannochloropsis oceanica|type=gene|length=2120bp
GCACAGGGCTAGCCAGCGGAAATGGGACAAGGCATCTAAATTGCGCTCCA
AAACCTCCCCACCCCACGATGCTCCGCACGACCTTGGCCCGGGAAGAAGT
GGCAGTCCGCAACGCCGTGGATAAGCTCTTGAGTCGGCAGCTGCAACAAC
AGGAGGATGGTCAATTCATGAGCTACGACAAAGAACAGACGCTCCAAGCT
CTATTGCGAACGCCGCGCCGTCGCTTTCTCTTCTTGGAAGCCGGTGGCGT
GAAAGCATTGGTCGAGCTACTGAAAACACACGGTTTCGACCGTCCTATAC
CTGTATCTGAGCTCCTGAGCATTATGCGTTTACTTATCCTATGCTGTCAG
GACACGGAGAGTGCCGTGGGAGTAGGGCTGTTCGGCCTACATCCGTGGAT
AAAACGGGTGCTGGCCTCGGACAATGAAGAGGAAGGCCAGGAGGATGACG
AGGCAACGGAGGTCCTGCGAGAATATGCTGAGGAGATCGCCAGCCGCTGC
GCTCGCGTTCGTGGGGGTTTCCCCCTTCAAAGATTGGCATTATGCTCAGA
TTCGGCATTCTCGTCGTTACATTTGCCCGTACGTGTGCCTATTTATTCTC
ACTTTCGCACCACCACCATCACCCACGCTCAAAACCATCAGCCAGGGAAA
GAAAATGAAAGCAAGGATCTCATCGTTCTGATTTCACCCATCGCCTATCG
TATGAGCAGTCAAGCGGATACTGGTTATTTTCTATGGCCGGCTGCTACTA
TTCTCACTCGATTCATTTTGATAAATTCTTCTTTTTTTGCTGGGAAGAGG
GTGATGGAGATCGGAGCAGGGTTGGGGTTGTGTGGTTTAGTTGCAGGGAG
GGTTGCCAAAGAGGTGTTGCTGACTGATCATAATTTAGCATGTGTGCGGC
AAATGCAGGAGCATGTGAGATTGAATCGTGATGATGGGATAGGGGGATGG
GAGGAAGATCGAGTGACATCGAATGAAGGAGAGGCAGCGGCAGAGGCAGG
ATCAGCGGGAGCAACTTTAGGAGCAACAGTAGCGCTTGTGCATCCAAGCA
CAATGAAAGTGCGGTGGTTAGATTGGGATCGGCTGGAGGCCGTGTCGAAA
TTCACGTGGCAAGTGTCGGAGAAGGCAGAAGAGAAGGGGATACGAGGGGG
GCGGGAAGAGGAGGAAGGAGCAAAGAGCGAGGTGGACGAAGAGTATGATA
GAAAGGAGAATGCTGATTATCACTGTGTTTCAGAGGAGGAGATCGAAAGC
TTTGGCCGGCCGCGATGGAGCAGTGGCTTGCTCGATGTGGTGATAGGGAG
TGACTGTATTTGCGACGAGCCTAGCGCGGTGGGAGTGGCCCGCCTCCTTA
GCTTGACCTTGAAGCCGGGCACTGGAGTGGGGTATATCACTGCTCCTGCC
CCCCAGCATAGgtaagatatatgatttgttcttagaaatgggatagaaaa
gattaattaatttcttaattaaatgaatcaataaataagataaaataaaa
ggatgatgaatgaaagagaggaagacagggatgaattaatgaattagaat
agatgaataggtcaatgaatgaatgcatgagtaatgaaagcaaaacttac
aaatgcacgcaccgaattaaaaacagGTATGGCGTCCACGCTCTTCCGCG
AGAGCTGGAGGCATGCGGGCTGAGCTTTGAACAGGAGGAGGTTACTGACG
AGGAGCTGTTGGAAGACCTTCAGGAGGCGGCATACATGCGCTTTCACCTC
TTCACGGTGCGGAGGATGAAGGAGGAGGGGCAGCAAGGAAGAGAGGCAGC
AGTAGCAGTAGTAGTAGCAGCTGCAGCTACAGCAACAGCAGCAGTAGCGG
CAACAGCAGCAGCAGCAGCAGCAACAACAACAACAGCAGCAACAGCAACA
GCAGCAACAGCAGCAGGAGTAGTAGCAGCAGCAGCAGCACTAGCAGCAGC
CACAACAGCAGCAACAGCAACAGCAGTAGCAGTAGCAGGAGGAGTTATGG
GAGCAGCACCAACAGCAGTAACAGGAGGAGCTGTCGATGCATGCGCACTG
CCCAGCATAGGTTCAATAGACGTGACAGAGGAAATGTAAATGTACGAAAG
CCAGGTACACATACCCACAC
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protein sequence of NO20G01140.1

>NO20G01140.1-protein ID=NO20G01140.1-protein|Name=NO20G01140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=602bp
MLRTTLAREEVAVRNAVDKLLSRQLQQQEDGQFMSYDKEQTLQALLRTPR
RRFLFLEAGGVKALVELLKTHGFDRPIPVSELLSIMRLLILCCQDTESAV
GVGLFGLHPWIKRVLASDNEEEGQEDDEATEVLREYAEEIASRCARVRGG
FPLQRLALCSDSAFSSLHLPVRVPIYSHFRTTTITHAQNHQPGKENESKD
LIVLISPIAYRMSSQADTGYFLWPAATILTRFILINSSFFAGKRVMEIGA
GLGLCGLVAGRVAKEVLLTDHNLACVRQMQEHVRLNRDDGIGGWEEDRVT
SNEGEAAAEAGSAGATLGATVALVHPSTMKVRWLDWDRLEAVSKFTWQVS
EKAEEKGIRGGREEEEGAKSEVDEEYDRKENADYHCVSEEEIESFGRPRW
SSGLLDVVIGSDCICDEPSAVGVARLLSLTLKPGTGVGYITAPAPQHRYG
VHALPRELEACGLSFEQEEVTDEELLEDLQEAAYMRFHLFTVRRMKEEGQ
QGREAAVAVVVAAAATATAAVAATAAAAAATTTTAATATAATAAGVVAAA
AALAAATTAATATAVAVAGGVMGAAPTAVTGGAVDACALPSIGSIDVTEE
M*
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Synonyms
Publications