NO20G01120, NO20G01120 (gene) Nannochloropsis oceanica

Overview
NameNO20G01120
Unique NameNO20G01120
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2241
Alignment locationchr20:351875..354115 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:351875..354115 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO20G01120 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002642NSK002642Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G01120.1NO20G01120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G01120.1NO20G01120.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G01120 ID=NO20G01120|Name=NO20G01120|organism=Nannochloropsis oceanica|type=gene|length=2241bp
ATGGGCTCCTGCTCCTGTGACGAAGAGCCGTTGCGGTCTCGCCCCTTTTT
TTCAGAGACGCGGCTCCGAGACCTCTGGTTGTACCTGCAACCAAACCCTC
CCCGCTCCGTGCGCATTTTCTTGCATCTGTGCCCTTGGGGACAGATCACT
GTGCAGGTCGTTACTTTTTGTCGGGGATGTCTGATTCCTGCCCTCGTCAA
CCCGCGCTTGTGTCATCCATCTCCTCCTCTCTCGGGCTCCGAAGGCTCCT
CCTCGGCACGTAGATCGTCACATTGCCCACCCATACCGGGGTATCACATT
TCCTCCTCCTCCTCCTCCTCCTCTTTCTGTCCCTCTTCTTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTATTCCTTCCCA
CCAgtggcatatcaaatcgcactcctcacgcctagtcagaaccatttcca
ttcaccctcacacttctcctactgccacagTATACCGCACCACCGCTCTA
CTGTGACCCCATCGCAAACATGACAAGTCTCAACCAAGACCTGGGTGAGT
TGCACCACCTCATCGTCACCAAGGAGCATGCCATGCATACGCTGGTTGTC
AAATgtaagctgcgggatgcaggcaagaagaaatgagggaggaggaggtg
ggaggaggtcaagcaagatgttggtggtctttgaatgagctatcacccca
gcagccgctattatagcatcttttcatccttctttcactcactcccttca
tccctccttcccttccttcctcccttcagCTAAGGAAGTCGGCGACACCA
TTCGCACCCGCGAAGAAAGCCTCGAAACCGAGACTACCAAACGCACCGAG
CTCCACCGCGCCAATAATCGTCTCTACCAGCGCATTAGGGTAGAGCAAGA
GAAGgtaagaagcactcagcattttcccttcttctcgagccgggagatat
aaaaaggaataaatggcatcctgtctgctccctccctccctccttccctc
cctgcctttcttgcctcacatcagCTCAATGGACTCGACGTCTGCATCGA
CCTGAACCGACAAGCCCTCAGCGAAGCCAACCGCCAAAATACCGAGCTTT
CTCTTCAGGTTGACAATTGGACTCGAGAACAAATGGAGGGGGTCACCCAC
ACCCTTCTCCATCTTCACACAGAGCTTTCCTCCATCTACGCGTATGGACA
AACACACACTCAAGTCGCCGCCGCCGCCGCAGCAGCGCATACCGCCGCCA
AGAAGAGTCGAATGGAGGAGGAGCACAAAGCATCCGCGTTGCAGCAGCAC
TTAGCAGCATTGCGTGGAAAGAAGGAGGCATTAGAGATGGAGATACGGGG
AATGACGCCTAAGCTGCAGCAGGTGGCGACCAAGAAGGCAGCTGTTGCGC
ATCGAAAGCACGTGGCGGCGCAAGAGTGGAAACAGCAACATGAGTGGACG
GAAGAGCACCAAAAGGAGGCAGCAGTGGCAGCAGCGGCTGCGGGGAAGCT
GAAAGGGGAGAAGGAGAAGGAGTTAGAAAGAGGAAAGGAATCACTAAAGA
GGGTGGCAGAGACCGTAAAAGAGGAGAAAATAGAGCTTGTGGCTATGCTG
GATAGGGTGGAGGAGCAGCAGCTGGCAAAGAGGGAGGGGGAGAAAGCGAG
GGAGGAAAGACGGGTGTTGCTGCTGCAGAAGGAGAAGGAGAGTGAAAAGA
AGAAAAATCTTGCGTGTGCCCTTGTGGAAGAAAAGCGAAACGTCATCAAG
AAGCAAATCCAGGCCGAGACGGAGAGGGAGGAGGCCAGGGCGGAAGCGGC
GGAGAGCATCCATGATGAGGGGTGGATGGCGAGGCTGGTTGCATATGAGA
ACGAGCTCGCGGCCTGCAAGACCTTGATGGCGCAACGGGAGCAGCGCCTC
TCCTTGGGAGAACGACAACTGACATGGATTAAGGCAATGGCGAGGAGGGT
GGAGGAGGAAGAAGGGGCAGTTGCTGCCTTGGCAGCGGCAGCAGCGGCAG
CAGAGGGAAAAGGAGAGGAGGAGGGAGGGGCGGAGAGAAAATTGGTGAAG
GAGACTTTGGTCCGGTTGGTGAGGGCCATGGAGGCGGTGAGGAAAGTGGA
CCTGCTGGAAGGAGAGGAGGAAGAAAGGGAGGAGGAGAAGAAGGAAGGAG
GGGGGGGGGAGGAAGGGGGGGAGGGTCGATGGAGGAGGTAG
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protein sequence of NO20G01120.1

>NO20G01120.1-protein ID=NO20G01120.1-protein|Name=NO20G01120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=623bp
MGSCSCDEEPLRSRPFFSETRLRDLWLYLQPNPPRSVRIFLHLCPWGQIT
VQVVTFCRGCLIPALVNPRLCHPSPPLSGSEGSSSARRSSHCPPIPGYHI
SSSSSSSSFCPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSYSFP
PYTAPPLYCDPIANMTSLNQDLGELHHLIVTKEHAMHTLVVKSKEVGDTI
RTREESLETETTKRTELHRANNRLYQRIRVEQEKLNGLDVCIDLNRQALS
EANRQNTELSLQVDNWTREQMEGVTHTLLHLHTELSSIYAYGQTHTQVAA
AAAAAHTAAKKSRMEEEHKASALQQHLAALRGKKEALEMEIRGMTPKLQQ
VATKKAAVAHRKHVAAQEWKQQHEWTEEHQKEAAVAAAAAGKLKGEKEKE
LERGKESLKRVAETVKEEKIELVAMLDRVEEQQLAKREGEKAREERRVLL
LQKEKESEKKKNLACALVEEKRNVIKKQIQAETEREEARAEAAESIHDEG
WMARLVAYENELAACKTLMAQREQRLSLGERQLTWIKAMARRVEEEEGAV
AALAAAAAAAEGKGEEEGGAERKLVKETLVRLVRAMEAVRKVDLLEGEEE
EREEEKKEGGGGEEGGEGRWRR*
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Synonyms
Publications