NO20G01010, NO20G01010 (gene) Nannochloropsis oceanica

Overview
NameNO20G01010
Unique NameNO20G01010
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2586
Alignment locationchr20:323384..325969 +

Link to JBrowse

Properties
Property NameValue
DescriptionRNA helicase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:323384..325969 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO:0016787hydrolase activity
GO:0003723RNA binding
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR014014RNA_helicase_DEAD_Q_motif
IPR011545DEAD/DEAH_box_helicase_dom
IPR001650Helicase_C
IPR014001Helicase_ATP-bd
IPR025313DUF4217
Homology
BLAST of NO20G01010 vs. NCBI_GenBank
Match: EWM22134.1 (atp-dependent rna helicase dbp4 [Nannochloropsis gaditana])

HSP 1 Score: 730.7 bits (1885), Expect = 4.800e-207
Identity = 371/486 (76.34%), Postives = 410/486 (84.36%), Query Frame = 0
Query:   65 METLRKRVVEEAPAPGSQPFIDAGRKRKTFQSLPLSKVTLKGLGQNSFTEMTDIQLGAVPHALAGRDVLGAAKTGSGKTLAFVVPLLEKLYREGWSLSDGLGALIITPTRELALQIFEVLRSVGKGHMFSAALLTGGKKEFREEQRRVPRMNIIVATPGRLLQHLEETPGFDAR--------------------------------GDRQTLLFSATQTKSVHDLARLSLGEAPQYVGVHDKSEHATPDQLVQNYVISPLEEKLDMLWSFLKSHMKHKVVVFLSSCSQVRYVYECFRCMQPGVPLLALHGKIKQARRTQIYFDFVRRPAAVLFATDIAARGLDFPACDWVVQVDAPEDAAMYIHRVGRTARYQSGGRSLLFLCPSEEEGMLKRLKLAHVPVKRLTINPSKTTSVKQKTAAVVASNMECKRLAGKAFSSYLRSVALMPHKDMFNVSKLDLEAFADSLGLPKCPSTKFLKILKDEEGG 519
            ME LRKRVV EAPAPG+Q F++ G   K F+ LPLS++TL+GL +N F+ MTDIQL AVPHALAGRDVLGAAKTGSGKTLAFVVPLLEKLYREGW+LSDGLGALIITPTRELALQIFEVLR+VGKGHMFSAALLTGGKKEFREEQ RVPRMNIIVATPGRLLQHLEETPGFDA                                   RQTLLFSATQTKSV DLARLSL +  +YVGVHD + HATPD+LVQNY+++ L +K+D LW+F+KSHMKHK+VVF SSCSQVRYV+ CFR +QPGVPLLALHGKIKQARRT IYF+FVRRPAAVLFATDIAARGLDFPACDWVVQVDAPED AMYIHRVGRTARY+SGGRSLLFL PSEE GML+RL+ AHVP+ R+T+NPSKTTSV+QKTAAVVASN ECKRLA KAF SYLRSVALMP KD+F++S LD+EAFAD+LGL KCPSTKFLK LK+  GG
Sbjct:    1 MELLRKRVVAEAPAPGTQLFVEGGGPGKAFRDLPLSRITLQGLDRNKFSAMTDIQLAAVPHALAGRDVLGAAKTGSGKTLAFVVPLLEKLYREGWALSDGLGALIITPTRELALQIFEVLRTVGKGHMFSAALLTGGKKEFREEQARVPRMNIIVATPGRLLQHLEETPGFDASQLQVLVLDEADRILDMGFSRQLNAILAYLPPGAGRQTLLFSATQTKSVKDLARLSLDKNSEYVGVHDTAAHATPDRLVQNYLVAALADKMDTLWAFIKSHMKHKLVVFFSSCSQVRYVHACFRALQPGVPLLALHGKIKQARRTHIYFEFVRRPAAVLFATDIAARGLDFPACDWVVQVDAPEDTAMYIHRVGRTARYRSGGRSLLFLLPSEEGGMLRRLEAAHVPISRVTVNPSKTTSVRQKTAAVVASNPECKRLAQKAFVSYLRSVALMPLKDVFDISALDVEAFADALGLSKCPSTKFLKALKEGRGG 486          
BLAST of NO20G01010 vs. NCBI_GenBank
Match: XP_008901471.1 (hypothetical protein PPTG_08278 [Phytophthora parasitica INRA-310] >ETN13451.1 hypothetical protein PPTG_08278 [Phytophthora parasitica INRA-310] >KUG00952.1 ATP-dependent RNA helicase dbp4 [Phytophthora nicotianae])

HSP 1 Score: 546.6 bits (1407), Expect = 1.300e-151
Identity = 295/535 (55.14%), Postives = 374/535 (69.91%), Query Frame = 0
Query:   50 SAAAEEKRQGMRVKEMETLRKRVVEEAPAPGSQPFIDAGRKRKTFQSLPLSKVTLKGLGQNSFTEMTDIQLGAVPHALAGRDVLGAAKTGSGKTLAFVVPLLEKLYREGWSLSDGLGALIITPTRELALQIFEVLRSVGKGHMFSAALLTGGKKEFREEQRRVPRMNIIVATPGRLLQHLEETPGFDA--------------------------------RGDRQTLLFSATQTKSVHDLARLSLGEAPQYVGVHDKSEHATPDQLVQNYVISPLEEKLDMLWSFLKSHMKHKVVVFLSSCSQVRYVYECFRCMQPGVPLLALHGKIKQARRTQIYFDFVRRPAAVLFATDIAARGLDFPACDWVVQVDAPEDAAMYIHRVGRTARYQSGGRSLLFLCPSEEEGMLKRLKLAHVPVKRLTINPSKTTSVKQKTAAVVASNMECKRLAGKAFSSYLRSVALMPHKDMFNVSKLDLEAFADSLGLPKCPSTKFLKILKDEE---GGXXXXXXVRAKKNKSRALERLKEKIKMERAVK 550
            S  A+ K+      E+E L  R+ E+ PA GSQ       +  +F   PLS+ + +GL    FT  T IQ+GA+PHALAGRDVL AAKTGSGKTLAF++P+LEKL+R  WS+ DGLGAL+I+PTRELALQIFEVLR+VGK H FSA L+ GG K FREEQ R+ RMN++V TPGRLLQH+E+TP FDA                                 G+RQT+LFSATQTKSV DLA LSL E P+YV VH+ S +ATP  L Q+YV++PLE KLD+L SF+KSH+K K +VFLS+C QVR+V+  F  +QPG+PL ALHGK KQ +R ++Y++F+ +PAAVLFATDIAARGLDFP  DWV+Q+D PEDAA YIHRVGRTARY   G++L+ L PSE +GM+KRL+ A VP++   +NP+KTTS +QK A+VVA + E K LA KAF SY+RSV L P +++F+ + L L+AFA+SLGLP  P   FL  +K E    G       +R KKN +R L++LKEKIK E+  K
Sbjct:   26 SDTAKLKQNERERLEIEKLEARIAEQTPARGSQL-----GEAASFDLFPLSEASRRGLRTCGFTAPTKIQVGALPHALAGRDVLAAAKTGSGKTLAFLLPVLEKLFRLRWSVEDGLGALVISPTRELALQIFEVLRNVGKAHAFSAGLVIGG-KNFREEQLRLVRMNLLVCTPGRLLQHMEQTPAFDASNLQVLVLDEADRILDLGFQKQLTSILEHLPPAGERQTMLFSATQTKSVKDLAALSLRE-PEYVAVHEHSANATPKGLQQSYVVTPLERKLDVLLSFIKSHLKQKTIVFLSTCRQVRFVHSVFCKLQPGIPLCALHGKYKQGKRVEVYYEFLNKPAAVLFATDIAARGLDFPQVDWVLQLDCPEDAANYIHRVGRTARYNKQGKALMCLVPSEVDGMMKRLEDAKVPIRETKLNPAKTTSCRQKVASVVAGDKEIKALAQKAFMSYVRSVYLQPDREVFDATALPLDAFAESLGLPGAPRMPFLSKMKAEHENGGNEALREELRGKKNVNRKLQQLKEKIKAEKERK 553          
BLAST of NO20G01010 vs. NCBI_GenBank
Match: ETI52662.1 (hypothetical protein F443_04276 [Phytophthora parasitica P1569])

HSP 1 Score: 546.2 bits (1406), Expect = 1.700e-151
Identity = 295/535 (55.14%), Postives = 373/535 (69.72%), Query Frame = 0
Query:   50 SAAAEEKRQGMRVKEMETLRKRVVEEAPAPGSQPFIDAGRKRKTFQSLPLSKVTLKGLGQNSFTEMTDIQLGAVPHALAGRDVLGAAKTGSGKTLAFVVPLLEKLYREGWSLSDGLGALIITPTRELALQIFEVLRSVGKGHMFSAALLTGGKKEFREEQRRVPRMNIIVATPGRLLQHLEETPGFDA--------------------------------RGDRQTLLFSATQTKSVHDLARLSLGEAPQYVGVHDKSEHATPDQLVQNYVISPLEEKLDMLWSFLKSHMKHKVVVFLSSCSQVRYVYECFRCMQPGVPLLALHGKIKQARRTQIYFDFVRRPAAVLFATDIAARGLDFPACDWVVQVDAPEDAAMYIHRVGRTARYQSGGRSLLFLCPSEEEGMLKRLKLAHVPVKRLTINPSKTTSVKQKTAAVVASNMECKRLAGKAFSSYLRSVALMPHKDMFNVSKLDLEAFADSLGLPKCPSTKFLKILKDEE---GGXXXXXXVRAKKNKSRALERLKEKIKMERAVK 550
            S  A+ K+      E+E L  R+ E+ PA GSQ       +   F   PLS+ + +GL    FT  T IQ+GA+PHALAGRDVL AAKTGSGKTLAF++P+LEKL+R  WS+ DGLGAL+I+PTRELALQIFEVLR+VGK H FSA L+ GG K FREEQ R+ RMN++V TPGRLLQH+E+TP FDA                                 G+RQT+LFSATQTKSV DLA LSL E P+YV VH+ S +ATP  L Q+YV++PLE KLD+L SF+KSH+K K +VFLS+C QVR+V+  F  +QPG+PL ALHGK KQ +R ++Y++F+ +PAAVLFATDIAARGLDFP  DWV+Q+D PEDAA YIHRVGRTARY   G++L+ L PSE +GM+KRL+ A VP++   +NP+KTTS +QK A+VVA + E K LA KAF SY+RSV L P +++F+ + L L+AFA+SLGLP  P   FL  +K E    G       +R KKN +R L++LKEKIK E+  K
Sbjct:   26 SDTAKLKQNERERLEIEKLEARIAEQTPARGSQL-----GEAANFDLFPLSEASRRGLRTCGFTAPTKIQVGALPHALAGRDVLAAAKTGSGKTLAFLLPVLEKLFRLRWSVEDGLGALVISPTRELALQIFEVLRNVGKAHAFSAGLVIGG-KNFREEQLRLVRMNLLVCTPGRLLQHMEQTPAFDASNLQVLVLDEADRILDLGFQKQLTSILEHLPPAGERQTMLFSATQTKSVKDLAALSLRE-PEYVAVHEHSANATPKGLQQSYVVTPLERKLDVLLSFIKSHLKQKTIVFLSTCRQVRFVHSVFCKLQPGIPLCALHGKYKQGKRVEVYYEFLNKPAAVLFATDIAARGLDFPQVDWVLQLDCPEDAANYIHRVGRTARYNKQGKALMCLVPSEVDGMMKRLEDAKVPIRETKLNPAKTTSCRQKVASVVAGDKEIKALAQKAFMSYVRSVYLQPDREVFDATALPLDAFAESLGLPGAPRMPFLSKMKAEHENGGNEALREELRGKKNVNRKLQQLKEKIKAEKERK 553          
BLAST of NO20G01010 vs. NCBI_GenBank
Match: ETK92536.1 (hypothetical protein L915_04132 [Phytophthora parasitica] >ETL45943.1 hypothetical protein L916_04087 [Phytophthora parasitica] >ETP22368.1 hypothetical protein F441_04223 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 546.2 bits (1406), Expect = 1.700e-151
Identity = 294/535 (54.95%), Postives = 374/535 (69.91%), Query Frame = 0
Query:   50 SAAAEEKRQGMRVKEMETLRKRVVEEAPAPGSQPFIDAGRKRKTFQSLPLSKVTLKGLGQNSFTEMTDIQLGAVPHALAGRDVLGAAKTGSGKTLAFVVPLLEKLYREGWSLSDGLGALIITPTRELALQIFEVLRSVGKGHMFSAALLTGGKKEFREEQRRVPRMNIIVATPGRLLQHLEETPGFDA--------------------------------RGDRQTLLFSATQTKSVHDLARLSLGEAPQYVGVHDKSEHATPDQLVQNYVISPLEEKLDMLWSFLKSHMKHKVVVFLSSCSQVRYVYECFRCMQPGVPLLALHGKIKQARRTQIYFDFVRRPAAVLFATDIAARGLDFPACDWVVQVDAPEDAAMYIHRVGRTARYQSGGRSLLFLCPSEEEGMLKRLKLAHVPVKRLTINPSKTTSVKQKTAAVVASNMECKRLAGKAFSSYLRSVALMPHKDMFNVSKLDLEAFADSLGLPKCPSTKFLKILKDEE---GGXXXXXXVRAKKNKSRALERLKEKIKMERAVK 550
            S  A+ K+      E+E L  R+ E+ PA GSQ       +  +F   PLS+ + +GL    FT  T IQ+GA+PHALAGRDVL AAKTGSGKTLAF++P+LEKL+R  WS+ DGLGAL+++PTRELALQIFEVLR+VGK H FSA L+ GG K FREEQ R+ RMN++V TPGRLLQH+E+TP FDA                                 G+RQT+LFSATQTKSV DLA LSL E P+YV VH+ S +ATP  L Q+YV++PLE KLD+L SF+KSH+K K +VFLS+C QVR+V+  F  +QPG+PL ALHGK KQ +R ++Y++F+ +PAAVLFATDIAARGLDFP  DWV+Q+D PEDAA YIHRVGRTARY   G++L+ L PSE +GM+KRL+ A VP++   +NP+KTTS +QK A+VVA + E K LA KAF SY+RSV L P +++F+ + L L+AFA+SLGLP  P   FL  +K E    G       +R KKN +R L++LKEKIK E+  K
Sbjct:   26 SDTAKLKQNERERLEIEKLEARIAEQTPARGSQL-----GEAASFDLFPLSEASRRGLRTCGFTAPTKIQVGALPHALAGRDVLAAAKTGSGKTLAFLLPVLEKLFRLRWSVEDGLGALVVSPTRELALQIFEVLRNVGKAHAFSAGLVIGG-KNFREEQLRLVRMNLLVCTPGRLLQHMEQTPAFDASNLQVLVLDEADRILDLGFQKQLTSILEHLPPAGERQTMLFSATQTKSVKDLAALSLRE-PEYVAVHEHSANATPKGLQQSYVVTPLERKLDVLLSFIKSHLKQKTIVFLSTCRQVRFVHSVFCKLQPGIPLCALHGKYKQGKRVEVYYEFLNKPAAVLFATDIAARGLDFPQVDWVLQLDCPEDAANYIHRVGRTARYNKQGKALMCLVPSEVDGMMKRLEDAKVPIRETKLNPAKTTSCRQKVASVVAGDKEIKALAQKAFMSYVRSVYLQPDREVFDATALPLDAFAESLGLPGAPRMPFLSKMKAEHENGGNEALREELRGKKNVNRKLQQLKEKIKAEKERK 553          
BLAST of NO20G01010 vs. NCBI_GenBank
Match: ETO81304.1 (hypothetical protein F444_04332 [Phytophthora parasitica P1976])

HSP 1 Score: 546.2 bits (1406), Expect = 1.700e-151
Identity = 294/535 (54.95%), Postives = 374/535 (69.91%), Query Frame = 0
Query:   50 SAAAEEKRQGMRVKEMETLRKRVVEEAPAPGSQPFIDAGRKRKTFQSLPLSKVTLKGLGQNSFTEMTDIQLGAVPHALAGRDVLGAAKTGSGKTLAFVVPLLEKLYREGWSLSDGLGALIITPTRELALQIFEVLRSVGKGHMFSAALLTGGKKEFREEQRRVPRMNIIVATPGRLLQHLEETPGFDA--------------------------------RGDRQTLLFSATQTKSVHDLARLSLGEAPQYVGVHDKSEHATPDQLVQNYVISPLEEKLDMLWSFLKSHMKHKVVVFLSSCSQVRYVYECFRCMQPGVPLLALHGKIKQARRTQIYFDFVRRPAAVLFATDIAARGLDFPACDWVVQVDAPEDAAMYIHRVGRTARYQSGGRSLLFLCPSEEEGMLKRLKLAHVPVKRLTINPSKTTSVKQKTAAVVASNMECKRLAGKAFSSYLRSVALMPHKDMFNVSKLDLEAFADSLGLPKCPSTKFLKILKDEE---GGXXXXXXVRAKKNKSRALERLKEKIKMERAVK 550
            S  A+ K+      E+E L  R+ E+ PA GSQ       +  +F   PLS+ + +GL    FT  T IQ+GA+PHALAGRDVL AAKTGSGKTLAF++P+LEKL+R  WS+ DGLGAL+++PTRELALQIFEVLR+VGK H FSA L+ GG K FREEQ R+ RMN++V TPGRLLQH+E+TP FDA                                 G+RQT+LFSATQTKSV DLA LSL E P+YV VH+ S +ATP  L Q+YV++PLE KLD+L SF+KSH+K K +VFLS+C QVR+V+  F  +QPG+PL ALHGK KQ +R ++Y++F+ +PAAVLFATDIAARGLDFP  DWV+Q+D PEDAA YIHRVGRTARY   G++L+ L PSE +GM+KRL+ A VP++   +NP+KTTS +QK A+VVA + E K LA KAF SY+RSV L P +++F+ + L L+AFA+SLGLP  P   FL  +K E    G       +R KKN +R L++LKEKIK E+  K
Sbjct:   26 SDTAKLKQNERERLEIEKLEARIAEQTPARGSQL-----GEAASFDLFPLSEASRRGLRTCGFTAPTKIQVGALPHALAGRDVLAAAKTGSGKTLAFLLPVLEKLFRLRWSVEDGLGALVVSPTRELALQIFEVLRNVGKAHAFSAGLVIGG-KNFREEQLRLVRMNLLVCTPGRLLQHMEQTPAFDASNLQVLVLDEADRILDLGFQKQLTSILEHLPPAGERQTMLFSATQTKSVKDLAALSLRE-PEYVAVHEHSANATPKGLQQSYVVTPLERKLDVLLSFIKSHLKQKTIVFLSTCRQVRFVHSVFCKLQPGIPLCALHGKYKQGKRVEVYYEFLNKPAAVLFATDIAARGLDFPQVDWVLQLDCPEDAANYIHRVGRTARYNKQGKALMCLVPSEVDGMMKRLEDAKVPIRETKLNPAKTTSCRQKVASVVAGDKEIKALAQKAFMSYVRSVYLQPDREVFDATALPLDAFAESLGLPGAPRMPFLSKMKAEHENGGNEALREELRGKKNVNRKLQQLKEKIKAEKERK 553          
BLAST of NO20G01010 vs. NCBI_GenBank
Match: ETM52267.1 (hypothetical protein L914_04099 [Phytophthora parasitica])

HSP 1 Score: 545.8 bits (1405), Expect = 2.200e-151
Identity = 294/535 (54.95%), Postives = 373/535 (69.72%), Query Frame = 0
Query:   50 SAAAEEKRQGMRVKEMETLRKRVVEEAPAPGSQPFIDAGRKRKTFQSLPLSKVTLKGLGQNSFTEMTDIQLGAVPHALAGRDVLGAAKTGSGKTLAFVVPLLEKLYREGWSLSDGLGALIITPTRELALQIFEVLRSVGKGHMFSAALLTGGKKEFREEQRRVPRMNIIVATPGRLLQHLEETPGFDA--------------------------------RGDRQTLLFSATQTKSVHDLARLSLGEAPQYVGVHDKSEHATPDQLVQNYVISPLEEKLDMLWSFLKSHMKHKVVVFLSSCSQVRYVYECFRCMQPGVPLLALHGKIKQARRTQIYFDFVRRPAAVLFATDIAARGLDFPACDWVVQVDAPEDAAMYIHRVGRTARYQSGGRSLLFLCPSEEEGMLKRLKLAHVPVKRLTINPSKTTSVKQKTAAVVASNMECKRLAGKAFSSYLRSVALMPHKDMFNVSKLDLEAFADSLGLPKCPSTKFLKILKDEE---GGXXXXXXVRAKKNKSRALERLKEKIKMERAVK 550
            S  A+ K+      E+E L  R+ E+ PA GSQ       +   F   PLS+ + +GL    FT  T IQ+GA+PHALAGRDVL AAKTGSGKTLAF++P+LEKL+R  WS+ DGLGAL+++PTRELALQIFEVLR+VGK H FSA L+ GG K FREEQ R+ RMN++V TPGRLLQH+E+TP FDA                                 G+RQT+LFSATQTKSV DLA LSL E P+YV VH+ S +ATP  L Q+YV++PLE KLD+L SF+KSH+K K +VFLS+C QVR+V+  F  +QPG+PL ALHGK KQ +R ++Y++F+ +PAAVLFATDIAARGLDFP  DWV+Q+D PEDAA YIHRVGRTARY   G++L+ L PSE +GM+KRL+ A VP++   +NP+KTTS +QK A+VVA + E K LA KAF SY+RSV L P +++F+ + L L+AFA+SLGLP  P   FL  +K E    G       +R KKN +R L++LKEKIK E+  K
Sbjct:   26 SDTAKLKQNERERLEIEKLEARIAEQTPARGSQL-----GEAANFDLFPLSEASRRGLRTCGFTAPTKIQVGALPHALAGRDVLAAAKTGSGKTLAFLLPVLEKLFRLRWSVEDGLGALVVSPTRELALQIFEVLRNVGKAHAFSAGLVIGG-KNFREEQLRLVRMNLLVCTPGRLLQHMEQTPAFDASNLQVLVLDEADRILDLGFQKQLTSILEHLPPAGERQTMLFSATQTKSVKDLAALSLRE-PEYVAVHEHSANATPKGLQQSYVVTPLERKLDVLLSFIKSHLKQKTIVFLSTCRQVRFVHSVFCKLQPGIPLCALHGKYKQGKRVEVYYEFLNKPAAVLFATDIAARGLDFPQVDWVLQLDCPEDAANYIHRVGRTARYNKQGKALMCLVPSEVDGMMKRLEDAKVPIRETKLNPAKTTSCRQKVASVVAGDKEIKALAQKAFMSYVRSVYLQPDREVFDATALPLDAFAESLGLPGAPRMPFLSKMKAEHENGGNEALREELRGKKNVNRKLQQLKEKIKAEKERK 553          
BLAST of NO20G01010 vs. NCBI_GenBank
Match: ETL99117.1 (hypothetical protein L917_03988 [Phytophthora parasitica])

HSP 1 Score: 544.3 bits (1401), Expect = 6.400e-151
Identity = 293/535 (54.77%), Postives = 374/535 (69.91%), Query Frame = 0
Query:   50 SAAAEEKRQGMRVKEMETLRKRVVEEAPAPGSQPFIDAGRKRKTFQSLPLSKVTLKGLGQNSFTEMTDIQLGAVPHALAGRDVLGAAKTGSGKTLAFVVPLLEKLYREGWSLSDGLGALIITPTRELALQIFEVLRSVGKGHMFSAALLTGGKKEFREEQRRVPRMNIIVATPGRLLQHLEETPGFDA--------------------------------RGDRQTLLFSATQTKSVHDLARLSLGEAPQYVGVHDKSEHATPDQLVQNYVISPLEEKLDMLWSFLKSHMKHKVVVFLSSCSQVRYVYECFRCMQPGVPLLALHGKIKQARRTQIYFDFVRRPAAVLFATDIAARGLDFPACDWVVQVDAPEDAAMYIHRVGRTARYQSGGRSLLFLCPSEEEGMLKRLKLAHVPVKRLTINPSKTTSVKQKTAAVVASNMECKRLAGKAFSSYLRSVALMPHKDMFNVSKLDLEAFADSLGLPKCPSTKFLKILKDEE---GGXXXXXXVRAKKNKSRALERLKEKIKMERAVK 550
            S  A+ K+      E+E L  R+ E+ PA GSQ       +  +F   PLS+ + +GL    FT  T IQ+GA+PHALAGRDVL AAKTGSGKTLAF++P+LEKL+R  WS+ DGLGAL+++PTRELALQIFEVLR+VGK H FSA L+ GG K FREEQ R+ RMN++V TPGRLLQH+E+TP FDA                                 G+RQT+LFSATQTKSV DLA LSL E P+YV VH+ S +ATP  L Q+YV++PLE KLD+L SF+KSH+K K +VFLS+C QVR+V+  F  +QPG+PL ALHGK KQ +R ++Y++F+ +PAAVLFATDIAARGLDFP  DWV+Q+D PEDAA +IHRVGRTARY   G++L+ L PSE +GM+KRL+ A VP++   +NP+KTTS +QK A+VVA + E K LA KAF SY+RSV L P +++F+ + L L+AFA+SLGLP  P   FL  +K E    G       +R KKN +R L++LKEKIK E+  K
Sbjct:   26 SDTAKLKQNERERLEIEKLEARIAEQTPARGSQL-----GEAASFDLFPLSEASRRGLRTCGFTAPTKIQVGALPHALAGRDVLAAAKTGSGKTLAFLLPVLEKLFRLRWSVEDGLGALVVSPTRELALQIFEVLRNVGKAHAFSAGLVIGG-KNFREEQLRLVRMNLLVCTPGRLLQHMEQTPAFDASNLQVLVLDEADRILDLGFQKQLTSILEHLPPAGERQTMLFSATQTKSVKDLAALSLRE-PEYVAVHEHSANATPKGLQQSYVVTPLERKLDVLLSFIKSHLKQKTIVFLSTCRQVRFVHSVFCKLQPGIPLCALHGKYKQGKRVEVYYEFLNKPAAVLFATDIAARGLDFPQVDWVLQLDCPEDAANHIHRVGRTARYNKQGKALMCLVPSEVDGMMKRLEDAKVPIRETKLNPAKTTSCRQKVASVVAGDKEIKALAQKAFMSYVRSVYLQPDREVFDATALPLDAFAESLGLPGAPRMPFLSKMKAEHENGGNEALREELRGKKNVNRKLQQLKEKIKAEKERK 553          
BLAST of NO20G01010 vs. NCBI_GenBank
Match: ETP50249.1 (hypothetical protein F442_04243 [Phytophthora parasitica P10297])

HSP 1 Score: 543.9 bits (1400), Expect = 8.400e-151
Identity = 293/535 (54.77%), Postives = 373/535 (69.72%), Query Frame = 0
Query:   50 SAAAEEKRQGMRVKEMETLRKRVVEEAPAPGSQPFIDAGRKRKTFQSLPLSKVTLKGLGQNSFTEMTDIQLGAVPHALAGRDVLGAAKTGSGKTLAFVVPLLEKLYREGWSLSDGLGALIITPTRELALQIFEVLRSVGKGHMFSAALLTGGKKEFREEQRRVPRMNIIVATPGRLLQHLEETPGFDA--------------------------------RGDRQTLLFSATQTKSVHDLARLSLGEAPQYVGVHDKSEHATPDQLVQNYVISPLEEKLDMLWSFLKSHMKHKVVVFLSSCSQVRYVYECFRCMQPGVPLLALHGKIKQARRTQIYFDFVRRPAAVLFATDIAARGLDFPACDWVVQVDAPEDAAMYIHRVGRTARYQSGGRSLLFLCPSEEEGMLKRLKLAHVPVKRLTINPSKTTSVKQKTAAVVASNMECKRLAGKAFSSYLRSVALMPHKDMFNVSKLDLEAFADSLGLPKCPSTKFLKILKDEE---GGXXXXXXVRAKKNKSRALERLKEKIKMERAVK 550
            S  A+ K+      E+E L  R+ E+ PA GSQ       +  +F   PLS+ + +GL    FT  T IQ+GA+PHALAGRDVL AAKTGSGKTLAF++P+LEKL+R  WS+ DGLGAL+++PTRELALQIFEVLR+VGK H FSA L+ GG K FREEQ R+ RMN++V TPGRLLQH+E+TP FDA                                 G+RQT+LFSATQTKSV DLA LSL E P+YV VH+ S +ATP  L Q+YV++PLE KLD+L SF+KSH+K K +VFLS+C QVR+V+  F  +QPG+PL ALHGK KQ +R ++Y++F+ +PAAVLFATDIAARGLDFP  DWV+Q+D PEDAA YIHRVGRTARY   G++L+ L PSE +GM+KRL+ A VP++   +NP+KTTS +QK A+VVA + E K LA KAF SY+R V L P +++F+ + L L+AFA+SLGLP  P   FL  +K E    G       +R KKN +R L++LKEKIK E+  K
Sbjct:   26 SDTAKLKQNERERLEIEKLEARIAEQTPARGSQL-----GEAASFDLFPLSEASRRGLRTCGFTAPTKIQVGALPHALAGRDVLAAAKTGSGKTLAFLLPVLEKLFRLRWSVEDGLGALVVSPTRELALQIFEVLRNVGKAHAFSAGLVIGG-KNFREEQLRLVRMNLLVCTPGRLLQHMEQTPAFDASNLQVLVLDEADRILDLGFQKQLTSILEHLPPAGERQTMLFSATQTKSVKDLAALSLRE-PEYVAVHEHSANATPKGLQQSYVVTPLERKLDVLLSFIKSHLKQKTIVFLSTCRQVRFVHSVFCKLQPGIPLCALHGKYKQGKRVEVYYEFLNKPAAVLFATDIAARGLDFPQVDWVLQLDCPEDAANYIHRVGRTARYNKQGKALMCLVPSEVDGMMKRLEDAKVPIRETKLNPAKTTSCRQKVASVVAGDKEIKALAQKAFMSYVRYVYLQPDREVFDATALPLDAFAESLGLPGAPRMPFLSKMKAEHENGGNEALREELRGKKNVNRKLQQLKEKIKAEKERK 553          
BLAST of NO20G01010 vs. NCBI_GenBank
Match: GAX97157.1 (Hypothetical protein PINS_005016 [Pythium insidiosum])

HSP 1 Score: 543.1 bits (1398), Expect = 1.400e-150
Identity = 291/511 (56.95%), Postives = 364/511 (71.23%), Query Frame = 0
Query:   64 EMETLRKRVVEEAPAPGSQPFIDAGRKRKTFQSLPLSKVTLKGLGQNSFTEMTDIQLGAVPHALAGRDVLGAAKTGSGKTLAFVVPLLEKLYREGWSLSDGLGALIITPTRELALQIFEVLRSVGKGHMFSAALLTGGKKEFREEQRRVPRMNIIVATPGRLLQHLEETPGFDARG------------------------------DRQTLLFSATQTKSVHDLARLSLGEAPQYVGVHDKSEHATPDQLVQNYVISPLEEKLDMLWSFLKSHMKHKVVVFLSSCSQVRYVYECFRCMQPGVPLLALHGKIKQARRTQIYFDFVRRPAAVLFATDIAARGLDFPACDWVVQVDAPEDAAMYIHRVGRTARYQSGGRSLLFLCPSEEEGMLKRLKLAHVPVKRLTINPSKTTSVKQKTAAVVASNMECKRLAGKAFSSYLRSVALMPHKDMFNVSKLDLEAFADSLGLPKCPSTKFLKILKDEEGG-XXXXXXVRAKKNKSRALERLKEKIK 544
            E+E + +R+ E  PA GSQ   DA     +F   PLS+ + +GL +  FT+ T IQ+GA+PHALAGRD+LGAAKTGSGKTLAF++PLLEKLYR  W + DGLGAL+I+PTRELALQIFEVLRSVGK H FSA L+ GG K F+EEQ R+ RMNI+V TPGR+LQH+E+TP FDA                                DRQT+LFSATQTKSV DLA+LSL E P+Y+ VH+KS  ATP  L Q+ V+ PL++KLD+L+SFLKSH+KHK++VFLS+C QVR+V+  F  +QPG+PL AL GK KQ +R +IY++F+ +PAAVLFATDIAARGLDFP  DWVVQ+D PED A YIHRVGRTARY   G++LL L PSE EGM K L+ A +P+K + +NP+KT S +QK  + VA++ + K LA KAF SY+RSV LMP KD+F   +L LEAFA S GLP  P   FL+ LK ++         +R KKN +R L +LKEKIK
Sbjct:  247 EIEAMEQRIRETTPARGSQ-LADA----DSFDVFPLSEASKRGLAKCGFTKPTRIQIGAIPHALAGRDILGAAKTGSGKTLAFLLPLLEKLYRLRWDVEDGLGALVISPTRELALQIFEVLRSVGKFHSFSAGLVIGG-KNFKEEQYRLVRMNILVCTPGRMLQHMEQTPDFDATNVQLLVLDEADRILDMGFQQQLSAIVSYLPTDRQTMLFSATQTKSVKDLAKLSLKE-PEYIAVHEKSAMATPAGLQQSLVVCPLDQKLDVLFSFLKSHLKHKIIVFLSTCRQVRFVHAAFCKLQPGIPLCALXGKYKQPKRVEIYYEFLNKPAAVLFATDIAARGLDFPQVDWVVQLDCPEDTANYIHRVGRTARYNKQGKALLCLLPSEAEGMKKHLEDAKIPIKEIKLNPAKTQSCRQKVTSSVAADKDLKALAQKAFMSYVRSVFLMPLKDVFRAGELPLEAFAQSYGLPGAPRMPFLEQLKQQDADHEQLREELRGKKNVNRKLAQLKEKIK 750          
BLAST of NO20G01010 vs. NCBI_GenBank
Match: XP_024571469.1 (atp-dependent rna helicase [Plasmopara halstedii] >CEG35100.1 atp-dependent rna helicase [Plasmopara halstedii])

HSP 1 Score: 536.2 bits (1380), Expect = 1.700e-148
Identity = 288/536 (53.73%), Postives = 375/536 (69.96%), Query Frame = 0
Query:   50 SAAAEEKRQGMRVK-EMETLRKRVVEEAPAPGSQPFIDAGRKRKTFQSLPLSKVTLKGLGQNSFTEMTDIQLGAVPHALAGRDVLGAAKTGSGKTLAFVVPLLEKLYREGWSLSDGLGALIITPTRELALQIFEVLRSVGKGHMFSAALLTGGKKEFREEQRRVPRMNIIVATPGRLLQHLEETPGFDA--------------------------------RGDRQTLLFSATQTKSVHDLARLSLGEAPQYVGVHDKSEHATPDQLVQNYVISPLEEKLDMLWSFLKSHMKHKVVVFLSSCSQVRYVYECFRCMQPGVPLLALHGKIKQARRTQIYFDFVRRPAAVLFATDIAARGLDFPACDWVVQVDAPEDAAMYIHRVGRTARYQSGGRSLLFLCPSEEEGMLKRLKLAHVPVKRLTINPSKTTSVKQKTAAVVASNMECKRLAGKAFSSYLRSVALMPHKDMFNVSKLDLEAFADSLGLPKCPSTKFLKILKDE---EGGXXXXXXVRAKKNKSRALERLKEKIKMERAVK 550
            +  +++ +Q  R + E+E L  R+ E+ PA GSQ       +  +F    LS+ + +GL    F+  T IQ+GA+PHALAGRDVL AAKTGSGKTLAF++P+LEKL+R  WS+ DGLGALII+PTRELALQIFEVLR+VGK H FSA L+ GG K FREEQ R+ RMN++V TPGRLLQH+E+TP FD+                                 G+RQT+LFSATQTKSV DLA LSL + P+YV VH+ S +ATP  L Q+YV++PLE KLD+L SF+KSH+K K +VFLS+C QVR+++  F  +QPG+PL ALHGK KQ +R ++Y++F+ +PAAVLFATDIAARGLDFP  DWV+Q+D PEDAA YIHRVGRTARY   G++L+ L PSE +G+ KRL+ A VP++   +NP+K+TS  QK A+VVA + E K LA KAF SY+RSV L P +++F+ + L L+A+A+SLGLP  P   FL  +KDE    G       +R KKN +R L++LKEKIK E+  K
Sbjct:   22 NVVSDKLKQNERERLEIERLESRIAEQTPARGSQL-----GEAASFDLFALSEASRRGLRSCGFSAPTKIQIGALPHALAGRDVLAAAKTGSGKTLAFLLPVLEKLFRLRWSVEDGLGALIISPTRELALQIFEVLRNVGKAHTFSAGLVIGG-KNFREEQLRLIRMNLLVCTPGRLLQHMEQTPAFDSSNLQVLVLDEADRILDLGFQKQLTAILEHLPPAGERQTMLFSATQTKSVKDLAALSLRQ-PEYVAVHEHSANATPKGLQQSYVVTPLERKLDVLLSFIKSHLKQKTIVFLSTCRQVRFIHSVFCKLQPGIPLCALHGKYKQGKRVEVYYEFLNKPAAVLFATDIAARGLDFPQVDWVLQLDCPEDAANYIHRVGRTARYNKQGKALMCLVPSEVDGITKRLEDAKVPIRETKLNPAKSTSCHQKVASVVAGDKEIKALAQKAFMSYVRSVYLQPDREVFDATALALDAYAESLGLPGAPRMPFLSKMKDEHEKRGNEALREELRGKKNVNRKLQQLKEKIKAEKERK 550          
The following BLAST results are available for this feature:
BLAST of NO20G01010 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22134.14.800e-20776.34atp-dependent rna helicase dbp4 [Nannochloropsis g... [more]
XP_008901471.11.300e-15155.14hypothetical protein PPTG_08278 [Phytophthora para... [more]
ETI52662.11.700e-15155.14hypothetical protein F443_04276 [Phytophthora para... [more]
ETK92536.11.700e-15154.95hypothetical protein L915_04132 [Phytophthora para... [more]
ETO81304.11.700e-15154.95hypothetical protein F444_04332 [Phytophthora para... [more]
ETM52267.12.200e-15154.95hypothetical protein L914_04099 [Phytophthora para... [more]
ETL99117.16.400e-15154.77hypothetical protein L917_03988 [Phytophthora para... [more]
ETP50249.18.400e-15154.77hypothetical protein F442_04243 [Phytophthora para... [more]
GAX97157.11.400e-15056.95Hypothetical protein PINS_005016 [Pythium insidios... [more]
XP_024571469.11.700e-14853.73atp-dependent rna helicase [Plasmopara halstedii] ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002630NSK002630Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G01010.1NO20G01010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|649850gene_6314Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100060g22gene8309Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G01010.1NO20G01010.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G01010 ID=NO20G01010|Name=NO20G01010|organism=Nannochloropsis oceanica|type=gene|length=2586bp
ATGTCCAAGCGACCGCGGGCGGAAGAGCATGTCAACGGTGGTGGCGGCGG
CCGACAAGAGCACCACCATCGTGGAGAGGGGGGAGGCTTCAGCCAGGGTG
GTAGCGGCAGGGGTCGTGGTGGACGAGGAGGCAAGATGCCCCACCTTTCG
GCAGCAGCTGAAGAGAAGCGACAGGGCATGCGCGTAAAAGAGATGGAGAC
GCTCCGAAAGCGGGTAGTGGAAGAAGCGCCAGCTCCAGgtatatacatgc
atgcagcacacattcggacctaagatactacgtacttgccattctcttac
acccatcctacacaccgctacaattacagGCTCTCAACCTTTCATCGATG
CTGGCAGGAAACGCAAGACCTTCCAATCCTTGCCCCTGTCCAAAGTCACC
CTCAAGGGCCTTGGACAAAATAGCTTCACGGAGATGACTGACATCCAACT
CGGTGCTGTCCCCCACGCCCTGGCTGGACGCGACGTCCTCGGGGCCGCCA
AGACCGGGTCAGGCAAGACGCTTGCATTTGTGGTCCCGCTGTTGGAAAAA
TTGTACCGGGAGGGATGGTCCCTTTCGGATGGGTTGGGGGCGTTGATTAT
CACTCCGACGAGGGAGTTGGCATTGCAAATTTTTGAAGTCTTGCGGTCGG
TGGGGAAGGGACACATGTTTTCAGCGGCGTTGCTGACAGGGGGTAAAAAG
GAGTTCCGAGAAGAACAGCGAAGGGTACCACGGATGAACATCATCGTGGC
AACCCCGGGACGGTTGTTGCAGCACTTGGAGGAGACCCCTGGATTTGATG
CCAgtcagttgcaggtgttggtcttagacgaggcggatcggattctggac
atgggatttagtgcgcaattgaacgcgatattggagtatttgcctcagGG
GGGGATAGGCAGACGTTGTTGTTCTCGGCGACACAGACCAAGTCGGTGCA
TGACTTGGCACGGCTGTCCCTGGGGGAGGCCCCGCAGTATGTGGGTGTGC
ACGATAAAAGCGAGCATGCCACCCCGGATCAGTTGGTACAGAATTACGTG
ATTTCTCCATTGGAAGAGAAACTGGATATGCTCTGGTCGTTCCTCAAGAG
TCACATGAAGCACAAGGTGGTTGTGTTTCTGTCCTCTTGCTCGCAGGTGC
GGTATGTGTATGAATGCTTTCGGTGCATGCAACCCGGGGTACCCCTGCTG
GCGCTACACGGTAAGATAAAGCAGGCCAGACGGACTCAGATCTACTTTGA
TTTCGTTCGGAGGCCCGCAGCGGTCTTGTTTGCAACGGACATTGCAGCGC
GGGGTTTGGATTTCCCAGCGTGTGATTGGGTGGTCCAGGTGGATGCACCT
GAGGACGCGGCCATGTACATCCACAGAGTGGGGAGGACAGCGAGATACCA
AAGCGGGGGCAGGTCGCTGTTGTTTTTGTGCCCGAGTGAGGAGGAGGGCA
TGTTGAAAAGGCTGAAACTGGCCCATGTCCCGGTCAAGCGGTTGACCATC
AACCCCAGCAAAACGACGAGCGTGAAGCAGAAGACTGCGGCCGTCGTGGC
CTCCAACATGGAATGCAAGCGATTGGCAGGCAAGGCTTTCTCGTCTTACC
TGCGTTCGGTGGCGTTGATGCCCCACAAGGACATGTTCAATGTGTCTAAA
TTAGACTTGGAGGCCTTCGCAGACTCGCTGGGATTGCCCAAGTGTCCCTC
GACCAAATTTTTGAAAATCTTGAAGGATGAGGAGGGGGGGGAGGGAGGGA
GGGAGGGTGTGAGGGCGAAGAAAAATAAGAGTAGGGCGCTGGAGCGGCTG
AAGGAGAAGATCAAGATGGAGAGGGCCGTGAAGGCGGGGGGGGGAAGGAA
GGAGGAAGTGGGGAGGAAGGAGAGGAAGAGTAACGGTGAGAGCGATAGCG
GTAGCGAAGAGGTTGAGAGTGAAGATGAGGATCACGAAGAGGAGGGAGGG
TTGTTGCGCGTGAAGCAGAAGCATGCATGGGATCAGGAGAAGGAGGAGGA
CGAGGAGGATGCCGCAGTGGCCGCGCTATTGGCAAGGAAGGCAGCGAAGA
AGAAACTGAAGGAAAGGATGAAGCTTCCTCCAGTGGGTAAGCCTGTGGCG
CAGAACAAGAAAATTGTGTTTGCGGATAGTGACGAGGATGAGAAGGAAGA
GAAGGAGGGACGCCAGCAGCAACAACAGCTGCTCCAGAAGGAGGAGGGAG
GGGAGGACGGAGGGGAGGACATGCTCACACTCAAGGCCAAGAACGAGGCG
TACGTGCAGATGGTCCAGCAACGACTCCAGGCAAGTCGGGAAAAGGATCG
AGCAGCCGAGCGAGAACGCGTACGAGAGAAACACAAGAAGAAGCGGCTGC
GTGATAAAGGAGAGAGAGACGAGGAGGAAGACGGGCTGGAAGGTGGAGCC
GTTTTGGGAAGCTATGAAGAGAAAGCGAGTGAAGAGGAAAGCGACGAGGA
GGAGAGTAAGGTCGACGAAGAGGACAGTGAAGAGGAAGTGGTACAGCAGA
AAGTGAAACGGTCCAAGCCCTTGTCTTTGCAAGAGCAGGAGGATGCCGTG
CTGCGGAGCTTGCGCGGTGGGAGTGGCATAATTTAG
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protein sequence of NO20G01010.1

>NO20G01010.1-protein ID=NO20G01010.1-protein|Name=NO20G01010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=800bp
MSKRPRAEEHVNGGGGGRQEHHHRGEGGGFSQGGSGRGRGGRGGKMPHLS
AAAEEKRQGMRVKEMETLRKRVVEEAPAPGSQPFIDAGRKRKTFQSLPLS
KVTLKGLGQNSFTEMTDIQLGAVPHALAGRDVLGAAKTGSGKTLAFVVPL
LEKLYREGWSLSDGLGALIITPTRELALQIFEVLRSVGKGHMFSAALLTG
GKKEFREEQRRVPRMNIIVATPGRLLQHLEETPGFDARGDRQTLLFSATQ
TKSVHDLARLSLGEAPQYVGVHDKSEHATPDQLVQNYVISPLEEKLDMLW
SFLKSHMKHKVVVFLSSCSQVRYVYECFRCMQPGVPLLALHGKIKQARRT
QIYFDFVRRPAAVLFATDIAARGLDFPACDWVVQVDAPEDAAMYIHRVGR
TARYQSGGRSLLFLCPSEEEGMLKRLKLAHVPVKRLTINPSKTTSVKQKT
AAVVASNMECKRLAGKAFSSYLRSVALMPHKDMFNVSKLDLEAFADSLGL
PKCPSTKFLKILKDEEGGEGGREGVRAKKNKSRALERLKEKIKMERAVKA
GGGRKEEVGRKERKSNGESDSGSEEVESEDEDHEEEGGLLRVKQKHAWDQ
EKEEDEEDAAVAALLARKAAKKKLKERMKLPPVGKPVAQNKKIVFADSDE
DEKEEKEGRQQQQQLLQKEEGGEDGGEDMLTLKAKNEAYVQMVQQRLQAS
REKDRAAERERVREKHKKKRLRDKGERDEEEDGLEGGAVLGSYEEKASEE
ESDEEESKVDEEDSEEEVVQQKVKRSKPLSLQEQEDAVLRSLRGGSGII*
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Synonyms
Publications