NO20G00960, NO20G00960 (gene) Nannochloropsis oceanica

Overview
NameNO20G00960
Unique NameNO20G00960
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2229
Alignment locationchr20:310577..312805 -

Link to JBrowse

Properties
Property NameValue
DescriptionTho complex subunit-like protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:310577..312805 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006397mRNA processing
GO:0006397mRNA processing
Vocabulary: Cellular Component
TermDefinition
GO:0000445THO complex part of transcription export complex
GO:0000445THO complex part of transcription export complex
Vocabulary: INTERPRO
TermDefinition
IPR008501THOC7/Mft1
Homology
[Close]
BLAST of NO20G00960 vs. NCBI_GenBank
Match: EWM22117.1 (tho complex subunit-like protein [Nannochloropsis gaditana])

HSP 1 Score: 256.5 bits (654), Expect = 8.600e-65
Identity = 141/211 (66.82%), Postives = 163/211 (77.25%), Query Frame = 0 
Query:    1 MINRSIFEDRLTFKETTITGHTAVSRLVARFNAFVNAXXXXXXXXXXXXXXXXXXXXXXXRELAFEQYDALMKELMLMRLEIDKAEAIFAALPRERDEFDAYAERIAEQTARAAAEIAALKEELNTERAVRLQREDYEVLGRLANQFPAKARTAAGQAKVAAEIGGMEEEKARLVDAVALRKRQLAFVLNAVRDLREGLDYDLRTEEEKER 212
            MI+R IFEDRLT+KETTITGHTAVSRLVARFNAFVNA                       RE A EQYDAL+KEL LMRLEIDKAEA+FA LPRER+EF+ Y++ IA+QTAR  AEI ALKE L  ERA+RLQRE+YE L +L N++PAKA+T  GQ KVAAEI  +EEEK RL  AVA+RKRQL+FVLNAVRDL+ GL+YD+RT+EEKER
Sbjct:    1 MIDRKIFEDRLTYKETTITGHTAVSRLVARFNAFVNA---AVSALGASDAKTPVGLGCGERETALEQYDALVKELTLMRLEIDKAEAVFATLPREREEFEVYSDTIAQQTARVEAEIVALKERLVVERAIRLQREEYEALAKLVNKYPAKAQTTVGQTKVAAEIAALEEEKGRLGKAVAMRKRQLSFVLNAVRDLKNGLEYDMRTDEEKER 208
[Close]
BLAST of NO20G00960 vs. NCBI_GenBank
Match: XP_002500957.1 (predicted protein, partial [Micromonas commoda] >ACO62215.1 predicted protein, partial [Micromonas commoda])

HSP 1 Score: 63.9 bits (154), Expect = 8.100e-7
Identity = 41/128 (32.03%), Postives = 70/128 (54.69%), Query Frame = 0 
Query:   69 DALMKELMLMRLEIDKAEAIFAALPRERDEFDAYAERIAEQTARAAAEIAALKEELNTERAVRLQREDYEVLGRLANQFPAKARTAAGQAKVAAEIGGMEEEKARLVDAVALRKRQLAFVLNAVRDLR 197
            +A +KE+ L    + +  A+ +A  RE +++ + +  +  +      EIA LK +L+  R  R  +E+YE L RL  QFP+++ T A  A + AEI  +E E       + LRK+Q A +L+ V +L+
Sbjct:   55 EAWLKEIALYEFNMGRYRAVASANAREMEQYASASAAVDGEVRGTKDEIAELKTDLDGARLDRQHKEEYEALRRLCTQFPSRSDTTARLASLEAEIAELETESEATASKLDLRKKQFALLLHLVNELQ 182
The following BLAST results are available for this feature:
BLAST of NO20G00960 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM22117.18.600e-6566.82tho complex subunit-like protein [Nannochloropsis ... [more]
XP_002500957.18.100e-732.03predicted protein, partial [Micromonas commoda] >A... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002625NSK002625Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G00960.1NO20G00960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|631458gene_6310Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100060g26gene8305Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G00960.1NO20G00960.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G00960 ID=NO20G00960|Name=NO20G00960|organism=Nannochloropsis oceanica|type=gene|length=2229bp
CGGCATTGCCCTGCATGGTTGCTGCAAGTGGTAGCAGTATGGCAAGAGGG
GAGCATGGGGTGGAGAAGGAAGGAAGGAGAGTGAGATGATGTCAACCAGA
GAAGAAAGCCGGGGCTGCAAGACGCGACCAATGCCTACCGCTTTATGAAT
TATCTAAGGTTGGCGACAGGCATAAGTGGAGAAAGATGAGACAATGCTTG
AGTGGCGAATATCGTACACTTTGCTGTCAAACGTTGCAAAACGAAGAAGC
GTCGCCTAAGCTCATGGACTCATCTGATGACGGCTGCGGACAGATTGCAT
CTTGCCTCACCAACTACTCAACCCACAGGCATCCATAGAGCAGCACCAGG
AGTATTATATCAATAAGTCACTGTGAATTACTGTTGAAATCCGCATCGTC
GCTTTTGCGGAGGGCAACTTTTACCTCCTGCCTCCCTCCTGCCTCTCCTC
GTCCTCCTCCCTCGTCTTCTTCCTATCTTACTTGCCCAGAATTTTAACAC
CCCTGGGCCTTTTGAACCCTTCTAAGGCTATCAGAAGGATATCCCCACCC
TGTGGACATCCAGAAGGAAGCATTCGCTAATCTGCGCGACGCTTCCTCCC
GTCGACTGCGTTTAGAAGGCGGAAAGGTTGAGCAGAGGCAAGAGGGAACG
GAGAGCTGGCATTGTGTTTTGCATGGGCTCGAGACAGTGAGGGTTTTGCT
CTTGTGGTGGAGTATGGATAACATGGACTTCCTGTCTCGATCCCTGTATG
TCCTTTGTTTGGAACAACTCCAGTGAATCAACAAGCCTGGGCCTTTTTAC
GCCTCTTGTTCCTAGACATACCGGGTCAATAGTATGTACTATCCATTGAA
ATATGGCGGTGACAGTGACAGCTACACTTTGTGCTACGCTTTAAGAAGCT
GAGATGTTTACCGGCCCGGTCCATGCGGAATGATCGGCGAGACGAAGGAC
CTCCTCCTCTTTCCGAGCCCACCAAGAGACCAAATAGCAGCGGCATCGAT
GTCGCAAGTCTGTGGCATTCCCCCTCCCAGATCGTGCGGATGGTTGACAC
GATAAGTAGGACCCACAGTGGTCCGAAATCCAAGCGCAACGGGGCCACGG
GGAGAGCAAGTGACCTTCCTCGCCCCCCTCCTTCCCGCCCTCTTCCCGCC
ATTGCAATCAAGAGCCTCTCTACACTTTTCCCTCCTGCGTACCAACAGAC
CTAATCTCTCTTTTTCCTTCCTCACATTGTCCTCTTTCCCGTCCTCCTAT
CTTCCCACCAGCACAGCACAGCAGCCCCCAAAGCGCAAGTAGATATAAAT
GATTAACCGATCGATTTTTGAGGACCGATTGACGTTCAAAGAGACGACTA
TCACGGGACATACGGCCGTGAGTCGACTTGTAGCTAGATTCAATGCCTTT
GTCAACGCCGCTGCGGTTGCAACTGGTGGTGGAGGTGGTGGAGGTGGAAC
ACGGGAAGAGGGGAGAGAGGAGGGAGGAAGGGAGTTGGCGTTTGAGCAGT
ATGACGCCTTAATGAAGGAGTTGATGTTGATGCGGCTGGAGgtaagacgg
aaagaggtgtgagagggggtggctggatcaatgggctggcttgggctcaa
ttcgtgccgctgctggtatactgaagacaccaacgaataggagggagcct
catccacacatccttccctccttccctccctccttccatccttcccaccg
ttagATTGACAAGGCCGAAGCCATCTTTGCGGCTTTGCCCCGAGAGAGAG
ATGAATTCGACGCCTACGCGGAGAGAATCGCTGAACAAACCGCCCGAGCC
GCAGCCGAGATAGCGGCGCTAAAAGAAGAATTAAACACTGAGCGTGCCGT
GCGATTGCAAAGAGAGGACTACGAGGTTTTGGGCAGACTTGCCAATCAAT
TTCCAGCCAAAGCCCGGACCGCAGCTGGGCAAGCGAAGGTAGCAGCAGAA
ATCGGGGGGATGGAAGAGGAAAAGGCCCGACTGGTGGATGCAGTGGCACT
CAGGAAAAGACAGTTAGCGTTTGTTTTGAATGCTGTGAGGGATTTAAGGG
AGGGATTAGATTATGATTTGAGGACGGAGGAGGAGAAGGAACGGTGGTTG
ACGGAGCGGGCGGCTGCGCGGGCTAAGAGGGAAGAGGGAGGTGGGGGTGG
AGAAGGAGGAGGAGGAGGGGGGGAGGAGGTTGAAGGAGGGGAGGAGGAAG
AGGGTGGGGAGGAGATGCAGACAGACTAA
back to top

protein sequence of NO20G00960.1

>NO20G00960.1-protein ID=NO20G00960.1-protein|Name=NO20G00960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=256bp
MINRSIFEDRLTFKETTITGHTAVSRLVARFNAFVNAAAVATGGGGGGGG
TREEGREEGGRELAFEQYDALMKELMLMRLEIDKAEAIFAALPRERDEFD
AYAERIAEQTARAAAEIAALKEELNTERAVRLQREDYEVLGRLANQFPAK
ARTAAGQAKVAAEIGGMEEEKARLVDAVALRKRQLAFVLNAVRDLREGLD
YDLRTEEEKERWLTERAAARAKREEGGGGGEGGGGGGEEVEGGEEEEGGE
EMQTD*
back to top
Synonyms
Publications