NO20G00890, NO20G00890 (gene) Nannochloropsis oceanica

Overview
NameNO20G00890
Unique NameNO20G00890
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1441
Alignment locationchr20:295778..297218 -

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Properties
Property NameValue
DescriptionNucleic acid-binding, OB-fold-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:295778..297218 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003743translation initiation factor activity
GO:0008135translation factor activity, RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR006196RNA-binding_domain_S1_IF1
IPR001253TIF_eIF-1A
Homology
[Close]
BLAST of NO20G00890 vs. NCBI_GenBank
Match: EWM22121.1 (putative rna-binding protein eif1ad [Nannochloropsis gaditana])

HSP 1 Score: 213.8 bits (543), Expect = 5.900e-52
Identity = 107/130 (82.31%), Postives = 117/130 (90.00%), Query Frame = 0 
Query:    1 MSGAGRKSAYRKSVTEEVLNSFPEPDVAAGERVAQVVQSRGGNILQVLVADEEDDGPD--SSSLAILPTKFRKLIWVKRGDFLIVSGTSHDFLTAAGEKGKVKFMVEHILYKEQVKHLKEVGLWPAAFAD 129
            MSGAGRKSAYRKSVTEEVL+SFPEP+VAAGERVA+VVQSRGGNILQV VA +   G D  S SLA+LPTKFRKLIWVKRGDF+IVSGTSHDF TAAGEKGKVKFMVEHILYKEQVKHLK+ G+WP  F++
Sbjct:    1 MSGAGRKSAYRKSVTEEVLHSFPEPNVAAGERVARVVQSRGGNILQVNVAPDPQSGEDENSGSLALLPTKFRKLIWVKRGDFVIVSGTSHDFQTAAGEKGKVKFMVEHILYKEQVKHLKDQGMWPVVFSE 130
[Close]
BLAST of NO20G00890 vs. NCBI_GenBank
Match: GAX96923.1 (Hypothetical protein PINS_004766 [Pythium insidiosum])

HSP 1 Score: 136.7 bits (343), Expect = 9.200e-29
Identity = 68/133 (51.13%), Postives = 92/133 (69.17%), Query Frame = 0 
Query:    1 MSGAGRKSAYRKSVTEEVLNSFPEPDVAAGERVAQVVQSRGGNILQVLVADEEDDGPDSSSLAILPTKFRKLIWVKRGDFLIVSGTSHDFLTAAGEKGKVKFMVEHILYKEQVKHLKEVGLWPAAFADAVVVE 134
            MSG+GRKSAYRK VT +VL+  PEP     E++ +V+  RGGN+ +V       D   ++SL +LP KFRKLIWVKRGDFLIV+ + ++  TA G+KG V  +VEHILYK+Q+K+L+  GLWP  F +  V +
Sbjct:    1 MSGSGRKSAYRKGVTNKVLHGNPEPQ--ENEQIVRVIALRGGNLFEV------QDAEGATSLTMLPAKFRKLIWVKRGDFLIVASSDNEVSTADGKKGAVTSIVEHILYKDQIKNLRTKGLWPQGFDEMTVAQ 125
[Close]
BLAST of NO20G00890 vs. NCBI_GenBank
Match: CBJ25456.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 136.0 bits (341), Expect = 1.600e-28
Identity = 71/136 (52.21%), Postives = 95/136 (69.85%), Query Frame = 0 
Query:    1 MSGAGRKSAYRKSVTEEVLNSFPEPDVAAGERVAQVVQSRGGNILQVLVADEEDDGPDSSSLAILPTKFRKLIWVKRGDFLIVSGTSHDFLTAAGEKGKVKFMVEHILYKEQVKHLKEVGLWPA--AFADAVVVEG 135
            M+G GR++ YRKSVT++ LNS PEP     E +      RG NI+++++A+ E       SLA+LPT+FRKLIWVKRGD+LI S ++ DF T+AGE GKV+  VEHIL K+Q+KHLK+  LWPA  AF  A++  G
Sbjct:    1 MAGVGRRTLYRKSVTDDYLNSTPEP--GENEEIVLAQAPRGSNIIEIMLANGE------PSLALLPTRFRKLIWVKRGDYLITSTSAGDFETSAGETGKVRHRVEHILNKDQIKHLKKRELWPADDAFGGALLAAG 128
[Close]
BLAST of NO20G00890 vs. NCBI_GenBank
Match: XP_005854611.1 (rna binding protein, partial [Nannochloropsis gaditana CCMP526] >XP_005855688.1 rna binding protein, partial [Nannochloropsis gaditana CCMP526] >EKU20680.1 rna binding protein, partial [Nannochloropsis gaditana CCMP526] >EKU21751.1 rna binding protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 134.8 bits (338), Expect = 3.500e-28
Identity = 65/85 (76.47%), Postives = 72/85 (84.71%), Query Frame = 0 
Query:   46 QVLVADEEDDGPD--SSSLAILPTKFRKLIWVKRGDFLIVSGTSHDFLTAAGEKGKVKFMVEHILYKEQVKHLKEVGLWPAAFAD 129
            QV VA +   G D  S SLA+LPTKFRKLIWVKRGDF+IVSGTSHDF TAAGEKGKVKFMVEHILYKEQVKHLK+ G+WP  F++
Sbjct:    1 QVNVAPDPQSGEDENSGSLALLPTKFRKLIWVKRGDFVIVSGTSHDFQTAAGEKGKVKFMVEHILYKEQVKHLKDQGMWPVVFSE 85
[Close]
BLAST of NO20G00890 vs. NCBI_GenBank
Match: OQR94761.1 (hypothetical protein ACHHYP_00935 [Achlya hypogyna])

HSP 1 Score: 131.0 bits (328), Expect = 5.000e-27
Identity = 71/128 (55.47%), Postives = 86/128 (67.19%), Query Frame = 0 
Query:    1 MSGAGRKSAYRKSVTEEVLNSFPEPDVAAGERVAQVVQSRGGNILQVLVADEEDDGPDSSSLAILPTKFRKLIWVKRGDFLIVSGTSHDFLTAAGEKGKVKFMVEHILYKEQVKHLKEVGLWPAAFAD 129
            MSGAGRKS YRK VT++VL   PEP+  AGE + QV   RGGN+ +V     E       SLA+LPTK+RKLIWV+RGDFLIVSG   D      +KG V+F VEHILYK+Q+K+LK   LWP  F +
Sbjct:    1 MSGAGRKSGYRKGVTQDVLYGEPEPE--AGEVIVQVKSLRGGNLFEVETPTGE------VSLAMLPTKYRKLIWVRRGDFLIVSGADDD------KKGAVQFSVEHILYKDQIKNLKSKNLWPEVFVE 114
[Close]
BLAST of NO20G00890 vs. NCBI_GenBank
Match: XP_009515592.1 (hypothetical protein PHYSODRAFT_474031 [Phytophthora sojae] >EGZ28317.1 hypothetical protein PHYSODRAFT_474031 [Phytophthora sojae])

HSP 1 Score: 130.2 bits (326), Expect = 8.600e-27
Identity = 71/130 (54.62%), Postives = 86/130 (66.15%), Query Frame = 0 
Query:    1 MSGAGRKSAYRKSVTEEVLNSFPEPDVAAGERVAQVVQSRGGNILQVLVADEEDDGPDSSSLAILPTKFRKLIWVKRGDFLIV-SGTSHDFLTAAGEKGKVKFMVEHILYKEQVKHLKEVGLWPAAFADA 130
            MSGAGRKSAYRK VT  VL   PEP     E + +V   RG N+ +V+      D   + S+ +LPTKFRKLIWVKRGDFLIV  G   +  TA G+KG V  +VEHILYK+Q+K+LK   LWPAAF D+
Sbjct:    1 MSGAGRKSAYRKGVTSRVLYGDPEP--KENELIVRVTALRGSNLFEVV------DAEGAKSVTMLPTKFRKLIWVKRGDFLIVGEGDGGEATTAKGKKGAVTSIVEHILYKDQIKNLKRKDLWPAAFDDS 122
[Close]
BLAST of NO20G00890 vs. NCBI_GenBank
Match: ETI40666.1 (hypothetical protein F443_14028 [Phytophthora parasitica P1569] >ETK80765.1 hypothetical protein L915_13672 [Phytophthora parasitica] >ETL34180.1 hypothetical protein L916_13571 [Phytophthora parasitica] >ETL87466.1 hypothetical protein L917_13378 [Phytophthora parasitica] >ETM40661.1 hypothetical protein L914_13466 [Phytophthora parasitica] >ETP10423.1 hypothetical protein F441_13956 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 129.0 bits (323), Expect = 1.900e-26
Identity = 71/130 (54.62%), Postives = 86/130 (66.15%), Query Frame = 0 
Query:    1 MSGAGRKSAYRKSVTEEVLNSFPEPDVAAGERVAQVVQSRGGNILQVLVADEEDDGPDSSSLAILPTKFRKLIWVKRGDFLIV-SGTSHDFLTAAGEKGKVKFMVEHILYKEQVKHLKEVGLWPAAFADA 130
            MSG+GRKSAYRK VT+ VL   PEP     E + +V   RG N+ +V+      D     S+ +LPTKFRKLIWVKRGDFLIV  G   +  TA G+KG V  +VEHILYKEQ+K+LK   LWPAAF D+
Sbjct:    1 MSGSGRKSAYRKGVTKRVLYGDPEP--KENELIVRVTALRGSNLFEVV------DANGVKSVTMLPTKFRKLIWVKRGDFLIVGEGDGGEATTATGKKGAVTSIVEHILYKEQIKNLKRKELWPAAFDDS 122
[Close]
BLAST of NO20G00890 vs. NCBI_GenBank
Match: XP_008909484.1 (hypothetical protein PPTG_23530 [Phytophthora parasitica INRA-310] >ETN05014.1 hypothetical protein PPTG_23530 [Phytophthora parasitica INRA-310])

HSP 1 Score: 129.0 bits (323), Expect = 1.900e-26
Identity = 71/130 (54.62%), Postives = 86/130 (66.15%), Query Frame = 0 
Query:    1 MSGAGRKSAYRKSVTEEVLNSFPEPDVAAGERVAQVVQSRGGNILQVLVADEEDDGPDSSSLAILPTKFRKLIWVKRGDFLIV-SGTSHDFLTAAGEKGKVKFMVEHILYKEQVKHLKEVGLWPAAFADA 130
            MSG+GRKSAYRK VT+ VL   PEP     E + +V   RG N+ +V+      D     S+ +LPTKFRKLIWVKRGDFLIV  G   +  TA G+KG V  +VEHILYKEQ+K+LK   LWPAAF D+
Sbjct:    1 MSGSGRKSAYRKGVTKRVLYGDPEP--KENELIVRVTALRGSNLFEVV------DANGVKSVTMLPTKFRKLIWVKRGDFLIVGEGDGGEATTATGKKGAVTSIVEHILYKEQIKNLKRKELWPAAFDDS 122
[Close]
BLAST of NO20G00890 vs. NCBI_GenBank
Match: XP_008909485.1 (hypothetical protein, variant [Phytophthora parasitica INRA-310] >ETN05015.1 hypothetical protein, variant [Phytophthora parasitica INRA-310])

HSP 1 Score: 129.0 bits (323), Expect = 1.900e-26
Identity = 71/130 (54.62%), Postives = 86/130 (66.15%), Query Frame = 0 
Query:    1 MSGAGRKSAYRKSVTEEVLNSFPEPDVAAGERVAQVVQSRGGNILQVLVADEEDDGPDSSSLAILPTKFRKLIWVKRGDFLIV-SGTSHDFLTAAGEKGKVKFMVEHILYKEQVKHLKEVGLWPAAFADA 130
            MSG+GRKSAYRK VT+ VL   PEP     E + +V   RG N+ +V+      D     S+ +LPTKFRKLIWVKRGDFLIV  G   +  TA G+KG V  +VEHILYKEQ+K+LK   LWPAAF D+
Sbjct:    1 MSGSGRKSAYRKGVTKRVLYGDPEP--KENELIVRVTALRGSNLFEVV------DANGVKSVTMLPTKFRKLIWVKRGDFLIVGEGDGGEATTATGKKGAVTSIVEHILYKEQIKNLKRKELWPAAFDDS 122
[Close]
BLAST of NO20G00890 vs. NCBI_GenBank
Match: ETO69353.1 (hypothetical protein F444_14060 [Phytophthora parasitica P1976])

HSP 1 Score: 129.0 bits (323), Expect = 1.900e-26
Identity = 71/130 (54.62%), Postives = 86/130 (66.15%), Query Frame = 0 
Query:    1 MSGAGRKSAYRKSVTEEVLNSFPEPDVAAGERVAQVVQSRGGNILQVLVADEEDDGPDSSSLAILPTKFRKLIWVKRGDFLIV-SGTSHDFLTAAGEKGKVKFMVEHILYKEQVKHLKEVGLWPAAFADA 130
            MSG+GRKSAYRK VT+ VL   PEP     E + +V   RG N+ +V+      D     S+ +LPTKFRKLIWVKRGDFLIV  G   +  TA G+KG V  +VEHILYKEQ+K+LK   LWPAAF D+
Sbjct:    1 MSGSGRKSAYRKGVTKRVLYGDPEP--KENELIVRVTALRGSNLFEVV------DANGVKSVTMLPTKFRKLIWVKRGDFLIVGEGDGGEATTATGKKGAVTSIVEHILYKEQIKNLKRKELWPAAFDDS 122
The following BLAST results are available for this feature:
BLAST of NO20G00890 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22121.15.900e-5282.31putative rna-binding protein eif1ad [Nannochlorops... [more]
GAX96923.19.200e-2951.13Hypothetical protein PINS_004766 [Pythium insidios... [more]
CBJ25456.11.600e-2852.21conserved unknown protein [Ectocarpus siliculosus][more]
XP_005854611.13.500e-2876.47rna binding protein, partial [Nannochloropsis gadi... [more]
OQR94761.15.000e-2755.47hypothetical protein ACHHYP_00935 [Achlya hypogyna... [more]
XP_009515592.18.600e-2754.62hypothetical protein PHYSODRAFT_474031 [Phytophtho... [more]
ETI40666.11.900e-2654.62hypothetical protein F443_14028 [Phytophthora para... [more]
XP_008909484.11.900e-2654.62hypothetical protein PPTG_23530 [Phytophthora para... [more]
XP_008909485.11.900e-2654.62hypothetical protein, variant [Phytophthora parasi... [more]
ETO69353.11.900e-2654.62hypothetical protein F444_14060 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002620NSK002620Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G00890.1NO20G00890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594523gene_6304Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100060g31gene8301Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G00890.1NO20G00890.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G00890 ID=NO20G00890|Name=NO20G00890|organism=Nannochloropsis oceanica|type=gene|length=1441bp
GCGAGCTGGCCTCCATATGAAACGCGGAAATACTCCACTACCATAATTAG
CTGGAGGGGAGATGGGCAAATAACGTCTCGGAGACTACAACATGAGACCT
TGACAAGCCTTATCTTATAAATCCCCCACACATTCACCATCTCGATACAT
TCACAGATGAATAAGTGTCGTACGGATGGCGCGGTAACTTTTCCAATCTC
TTCTTCAGGGCCGCACACAAGCACAAGAAGAAGTTCGAGCGAGAAGGAGA
ACCTCAACGGTGCAGCCCGTTGCTTTCCTCAATCTTTGTTTATCTGGCCG
CACCAGCCATCCACTCACCACGAAACCCACACCACACACACACGCTCACA
CGCACACACAGAAGTCTTCAATTCATCGTCATGTCAGGTGCCGGCCGAAA
AAGCGCCTACCGCAAGAGCGTCACAGAGGAAGTCCTCAATTCCTTTCCCG
AGCCCGATGTTGCAGCCGGAGAGCGGGTCGCCCAAGTGGTGCAGTCGAGG
GGCGGTAACATTTTGCAGgtacatacatggtagcgctatgagtatggagg
gagaagacacatatgttgtgtaagcgtaagcgtcgttttctgtggtcttg
gcatgtattgaggtagtctcgttcccgtgctctcgtccactaagatggat
gttaggagggacaagaaggcgcggagcaaggcccctggcagtaaactcga
aacccacactcccacccctatctatcatcaatattagGTCCTGGTTGCCG
ACGAGGAAGACGATGGCCCCGACTCTTCCTCCCTTGCAATCCTGCCCACT
AAATTCCGTAAGCTCATCTGGGTCAAGCGCGGCGACTTTCTCATCGTCTC
GGGCACCTCACACGATTTCCTGACCGCCGCAGGCGAGAAAGGAAAAGTAA
AGTTTATGGTCGAGCATATTCTGTATAAAGAGCAGGTGAAGCATTTAAAG
GAGGTGGGTTTGTGGCCTGCGGCTTTTGCGGATGCGGTTGTGGTGGAGGG
ACTGCGGGAGGGAGGTAAGGACAAAGGGGAGAAGGAGAAGAGACAGGATG
GAAGGGGGGAAGCAAGATCATCAGCGACAGCAGCATCGGCAACAATCGGG
GACGTCATAGCAGGCTTCGCAGCAGGGGAGGACGGAGAAGAGGAAGACGA
GGACAGTGAGTACGAAAGCGAGGAGGATTACAGCGACTTACATGTAAATA
CCAATCGCCTGGCCAAGGCACATTTATATGTGGATAACGACGAGGACGAA
GACGATGACGACAACGAGGAGGACGAGGATGAGGATGAGGGGGAGGCGCT
AGAGACGTGACAGTTATTGCGCGTAAATAGTTCTTGTTTGTGTATACATA
GATGGACCTCCTCACACCTCAGCATCAAATAAGGAAATTACACTCAAGTA
AAACCAAAGCAAAGTAAACCAATGGACTAATGCAATTCAAA
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protein sequence of NO20G00890.1

>NO20G00890.1-protein ID=NO20G00890.1-protein|Name=NO20G00890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=237bp
MSGAGRKSAYRKSVTEEVLNSFPEPDVAAGERVAQVVQSRGGNILQVLVA
DEEDDGPDSSSLAILPTKFRKLIWVKRGDFLIVSGTSHDFLTAAGEKGKV
KFMVEHILYKEQVKHLKEVGLWPAAFADAVVVEGLREGGKDKGEKEKRQD
GRGEARSSATAASATIGDVIAGFAAGEDGEEEDEDSEYESEEDYSDLHVN
TNRLAKAHLYVDNDEDEDDDDNEEDEDEDEGEALET*
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Synonyms
Publications