NO20G00740, NO20G00740 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of NO20G00740 vs. NCBI_GenBank
Match: EWM22188.1 (splicing factor 3 subunit [Nannochloropsis gaditana]) HSP 1 Score: 334.0 bits (855), Expect = 2.900e-88 Identity = 149/172 (86.63%), Postives = 163/172 (94.77%), Query Frame = 0 Query: 1 MAKTCIADPCCCLASLVCPLPVACINRHRALEGKMEEYKCCQGYYPLCGMRPGEVGESSCPSLCLCLEATCCFTCAVSATRNYLMDKYSIHPDPMDYQIVRCSNAIQCLSCICSLASICIEDLREGARILRHIAHITFCTVQGCMQTQTAVEIAFQHKKGVEAPQANRMNDR 173 M+KTCIADPCCCLASLVCPLPVAC+NRHRALEG M+EYKCCQGYYPLCG R GEVGES+CPS+CLCLEATCCFTCAVSATRNYLMDKY IHPDPMDYQI+RCSNA+QCL+CICSLASIC++DLREGARILRH+AHITFCTVQGCMQTQ+AVEIAFQ KKGV+AP N + DR Sbjct: 39 MSKTCIADPCCCLASLVCPLPVACVNRHRALEGNMDEYKCCQGYYPLCGFRAGEVGESTCPSMCLCLEATCCFTCAVSATRNYLMDKYRIHPDPMDYQIIRCSNAMQCLACICSLASICVKDLREGARILRHVAHITFCTVQGCMQTQSAVEIAFQEKKGVQAPTVNAIQDR 210
BLAST of NO20G00740 vs. NCBI_GenBank
Match: CBJ32733.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 161.0 bits (406), Expect = 3.300e-36 Identity = 79/156 (50.64%), Postives = 103/156 (66.03%), Query Frame = 0 Query: 1 MAKTCIADPCCCLASLVCPLPVACINRHRALEGKMEEYKCCQGYYPLCGMRPGEVGESSCPSLCLCLEATCCFTCAVSATRNYLMDKYSIHPDPMDYQIVRCSNAIQCLSCICSLASICIEDLREGARILRHIAHITFCTVQGCMQTQTAVEIAFQ 157 M C P C L C I R RAL+G +E Y CCQGYYP+C M G+ GE SCP CLCLE+ CC +CAVS++R YLMDK+S+ PDP D +I+R +N +Q LSCIC++A+ICIE++RE ARI+ IA + + T GCM Q E+ +Q Sbjct: 33 MEAPCKNCPWFCFGCL-CTCCAQFIVRKRALDGNLENYLCCQGYYPMCCMSAGDCGERSCPCFCLCLESFCCNSCAVSSSRMYLMDKFSVMPDPWDNRIIRFNNFLQLLSCICNIAAICIEEIRELARIIDLIADLVYMTTVGCMTGQMIYEMDYQ 187
BLAST of NO20G00740 vs. NCBI_GenBank
Match: XP_008905800.1 (hypothetical protein PPTG_11239 [Phytophthora parasitica INRA-310] >ETI46731.1 hypothetical protein F443_08916 [Phytophthora parasitica P1569] >ETK86653.1 hypothetical protein L915_08749 [Phytophthora parasitica] >ETL93210.1 hypothetical protein L917_08580 [Phytophthora parasitica] >ETM46483.1 hypothetical protein L914_08628 [Phytophthora parasitica] >ETN09239.1 hypothetical protein PPTG_11239 [Phytophthora parasitica INRA-310] >ETO75428.1 hypothetical protein F444_08983 [Phytophthora parasitica P1976] >ETP16524.1 hypothetical protein F441_08892 [Phytophthora parasitica CJ01A1] >ETP44582.1 hypothetical protein F442_08857 [Phytophthora parasitica P10297] >KUF79950.1 hypothetical protein AM587_10007986 [Phytophthora nicotianae]) HSP 1 Score: 159.1 bits (401), Expect = 1.300e-35 Identity = 82/160 (51.25%), Postives = 99/160 (61.88%), Query Frame = 0 Query: 7 ADPCCCLASLVCPLPVACINRHRALEGKMEEYKCCQGYYP--LCGMRPGEVGESSCPSLCLCLEATCCFTCAVSATRNYLMDKYSIHPDPMDYQIVRCSNAIQCLSCICSLASICIEDLREGARILRHIAHITFCTVQGCMQTQTAVEIAFQHKKGVEAP 165 ADP CCL S +CP I R +AL M Y CCQGY + R G GESSCP+ CLCLEA CC CAVSATR +MD+Y + PD D +I+RC+N IQ SCICSL SICI +L + A I+ IA T+ T QGCM Q VE+ + +K E P Sbjct: 32 ADPLCCLGSCLCPCCAQIIIRRKALNYDMSNYTCCQGYMDGIVPCARSGRCGESSCPNCCLCLEAFCCNGCAVSATRMMVMDRYRLQPDKWDNRIIRCNNCIQLASCICSLLSICISELGDLADIMNCIAQCTYATTQGCMTAQVNVELR-EREKAFEVP 190
BLAST of NO20G00740 vs. NCBI_GenBank
Match: XP_009520435.1 (hypothetical protein PHYSODRAFT_350080 [Phytophthora sojae] >EGZ25147.1 hypothetical protein PHYSODRAFT_350080 [Phytophthora sojae]) HSP 1 Score: 156.8 bits (395), Expect = 6.300e-35 Identity = 81/160 (50.62%), Postives = 99/160 (61.88%), Query Frame = 0 Query: 7 ADPCCCLASLVCPLPVACINRHRALEGKMEEYKCCQGYYP--LCGMRPGEVGESSCPSLCLCLEATCCFTCAVSATRNYLMDKYSIHPDPMDYQIVRCSNAIQCLSCICSLASICIEDLREGARILRHIAHITFCTVQGCMQTQTAVEIAFQHKKGVEAP 165 ADP CCL S +CP + R +AL M Y CCQGY + R G GESSCP+ CLCLEA C CAVSATR +MD+Y + PD D +I+RC+N IQ SCICSL SICI +L + A I+ IA T+ T QGCM Q VE+ + +KG E P Sbjct: 32 ADPLCCLGSCLCPCCAQIVIRRKALNYDMSNYTCCQGYMDGIVPCARSGRCGESSCPNCCLCLEAFFCNGCAVSATRMMVMDRYRLQPDKWDNRIIRCNNCIQLASCICSLLSICISELGDLADIMNCIAQCTYATTQGCMTAQVNVELR-EREKGFEVP 190
BLAST of NO20G00740 vs. NCBI_GenBank
Match: OWZ19583.1 (hypothetical protein PHMEG_0006149 [Phytophthora megakarya]) HSP 1 Score: 156.4 bits (394), Expect = 8.200e-35 Identity = 81/155 (52.26%), Postives = 97/155 (62.58%), Query Frame = 0 Query: 1 MAKTCIADPCCCLASLVCPLPVACINRHRALEGKMEEYKCCQGYYP--LCGMRPGEVGESSCPSLCLCLEATCCFTCAVSATRNYLMDKYSIHPDPMDYQIVRCSNAIQCLSCICSLASICIEDLREGARILRHIAHITFCTVQGCMQTQTAVEI 154 M K ADP CCL+S +CP I R +AL M Y CCQGY + R G GESSCP+ CLCLEA CC CAVSATR +MD+Y + PD D +I+RC+N IQ SCICSL SICI +L + A I+ IA T+ T QGCM Q VE+ Sbjct: 26 MMKAPGADPLCCLSSCLCPCCAQIIIRRKALNYDMSNYTCCQGYMDGIVPCARSGRCGESSCPNCCLCLEAFCCNGCAVSATRMMVMDRYRLQPDKWDNRIIRCNNCIQLASCICSLLSICISELGDLADIMNCIAQCTYATTQGCMTAQVNVEL 180
BLAST of NO20G00740 vs. NCBI_GenBank
Match: XP_024584893.1 (splicing factor 3 subunit [Plasmopara halstedii] >CEG48524.1 splicing factor 3 subunit [Plasmopara halstedii]) HSP 1 Score: 150.6 bits (379), Expect = 4.500e-33 Identity = 73/144 (50.69%), Postives = 94/144 (65.28%), Query Frame = 0 Query: 7 ADPCCCLASLVCPLPVACINRHRALEGKMEEYKCCQGYYP--LCGMRPGEVGESSCPSLCLCLEATCCFTCAVSATRNYLMDKYSIHPDPMDYQIVRCSNAIQCLSCICSLASICIEDLREGARILRHIAHITFCTVQGCMQTQ 149 ADP CCL+S +CP I R +AL M Y CCQGY + +R G GES+CP+ CLCLE+ CC CAVSATR +MD+Y + PD D +I+RC+N IQ +SC+CSL SICI +L + A ++ IA T+ T QGCM Q Sbjct: 32 ADPLCCLSSCLCPCCAQVIIRRKALNYDMSNYTCCQGYMDGVVPCVRSGSCGESNCPNCCLCLESFCCNGCAVSATRMLVMDRYRLQPDKWDNRIIRCNNCIQLVSCVCSLLSICISELGDLADLMYCIAQCTYATTQGCMTAQ 175
BLAST of NO20G00740 vs. NCBI_GenBank
Match: XP_005824613.1 (hypothetical protein GUITHDRAFT_116269 [Guillardia theta CCMP2712] >EKX37633.1 hypothetical protein GUITHDRAFT_116269 [Guillardia theta CCMP2712]) HSP 1 Score: 148.3 bits (373), Expect = 2.200e-32 Identity = 69/147 (46.94%), Postives = 93/147 (63.27%), Query Frame = 0 Query: 7 ADPCCCLASLVCPLPVACINRHRALEGKMEEYKCCQGYYPLCGMRPGEVGESSCPSLCLCLEATCCFTCAVSATRNYLMDKYSIHPDPMDYQIVRCSNAIQCLSCICSLASICIEDLREGARILRHIAHITFCTVQGCMQTQTAVEI 154 A+P CCLA L+CP P AC R +AL+ M YKCCQGYY C + G GESSCP LC LEA CF+C++S+TR +MD I PDP D +++ +N +Q LSCIC++ ++ IE+L A ++ IA + F V CM Q E+ Sbjct: 32 ANPLCCLAGLLCPCPSACFIRRQALDTDMTRYKCCQGYYDFCCFQAGNFGESSCPDLCNGLEALLCFSCSISSTRMLVMDTRDIRPDPCDNRLIGLNNCLQLLSCICNILAMFIEELEALADLVDFIADVVFALVSSCMIAQVNYEL 178
BLAST of NO20G00740 vs. NCBI_GenBank
Match: XP_005824612.1 (hypothetical protein GUITHDRAFT_165451 [Guillardia theta CCMP2712] >EKX37632.1 hypothetical protein GUITHDRAFT_165451 [Guillardia theta CCMP2712]) HSP 1 Score: 147.5 bits (371), Expect = 3.800e-32 Identity = 70/153 (45.75%), Postives = 94/153 (61.44%), Query Frame = 0 Query: 1 MAKTCIADPCCCLASLVCPLPVACINRHRALEGKMEEYKCCQGYYPLCGMRPGEVGESSCPSLCLCLEATCCFTCAVSATRNYLMDKYSIHPDPMDYQIVRCSNAIQCLSCICSLASICIEDLREGARILRHIAHITFCTVQGCMQTQTAVEI 154 M A+P CCLA L+CP P AC R +AL+ M YKCCQGYY C + G GESSCP LC LEA CF+C++S+TR +MD I PDP D +++ +N +Q LSCIC++ ++ IE+L A ++ IA + F V CM Q E+ Sbjct: 26 MCNAPCANPLCCLAGLLCPCPSACFIRRQALDTDMTRYKCCQGYYDFCCFQAGNFGESSCPDLCNGLEALLCFSCSISSTRMLVMDTRDIRPDPCDNRLIGLNNCLQLLSCICNILAMFIEELEALADLVDFIADVVFALVSSCMIAQVNYEL 178
BLAST of NO20G00740 vs. NCBI_GenBank
Match: CBJ32732.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 147.1 bits (370), Expect = 5.000e-32 Identity = 69/145 (47.59%), Postives = 93/145 (64.14%), Query Frame = 0 Query: 1 MAKTCIADPCCCLASLVCPLPVACINRHRALEGKMEEYKCCQGYYPLCGMRPGEVGESSCPSLCLCLEATCCFTCAVSATRNYLMDKYSIHPDPMDYQIVRCSNAIQCLSCICSLASICIEDLREGARILRHIAHITFCTVQGCM 146 M C P C L C I R RAL+G + Y CCQGY+P+C PG+ GE CP CLC+E+ C +CAVS++R YLMDK+ + PDP D +I+R +NA+Q LSCIC +A+IC+ ++RE ARI+ IA + + T GCM Sbjct: 33 MEAPCKNCPWCTFGCL-CMCCAQFIVRKRALDGNLANYVCCQGYFPMCCFEPGDCGERDCPCFCLCMESFACTSCAVSSSRMYLMDKFGVQPDPWDNRIIRFNNALQVLSCICHIAAICVREVRELARIIDLIADLVYMTTVGCM 176
BLAST of NO20G00740 vs. NCBI_GenBank
Match: GBG29468.1 (Hypothetical Protein FCC1311_056892 [Aurantiochytrium sp. FCC1311]) HSP 1 Score: 143.3 bits (360), Expect = 7.200e-31 Identity = 73/161 (45.34%), Postives = 99/161 (61.49%), Query Frame = 0 Query: 11 CCLASLVCPLPVACINRHRALEGKMEEYKCCQGYYPLCGMRPGEVGESSCPSLCLCLEATCCFTCAVSATRNYLMDKYSIHPDPMDYQIVRCSNAIQCLSCICSLASICIEDL-----REGARILRHIAHITFCTVQGCMQTQTAVEIAFQHKKGVEAPQA 167 CC + CP+ A R RAL M Y+CCQGY C + PG +GE +CP CLC+E CC +C++SATR +MD+YSI DP D +I+R +N +Q LSC+ +L SICIE+L RE A+I+ IA I + GCM Q E+ F+ K+G + P A Sbjct: 43 CCYGAF-CPVCAAYQLRTRALGYNMNNYRCCQGYLQFCCISPGNMGEENCPEFCLCMEVCCCLSCSISATRFMIMDQYSIVSDPCDNRIIRFNNFMQILSCVLNLLSICIEELYVRIFREAAQIVDLIAKIVYMVTFGCMAAQMKSEMEFREKQG-QGPNA 201 The following BLAST results are available for this feature:
BLAST of NO20G00740 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO20G00740 ID=NO20G00740|Name=NO20G00740|organism=Nannochloropsis oceanica|type=gene|length=2202bpback to top protein sequence of NO20G00740.2 >NO20G00740.2-protein ID=NO20G00740.2-protein|Name=NO20G00740.2|organism=Nannochloropsis oceanica|type=polypeptide|length=174bpback to top protein sequence of NO20G00740.1 >NO20G00740.1-protein ID=NO20G00740.1-protein|Name=NO20G00740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=202bpback to top Synonyms
Publications
|