NO20G00740, NO20G00740 (gene) Nannochloropsis oceanica

Overview
NameNO20G00740
Unique NameNO20G00740
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2202
Alignment locationchr20:248919..251120 -

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Properties
Property NameValue
DescriptionSplicing factor 3 subunit
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:248919..251120 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO20G00740 vs. NCBI_GenBank
Match: EWM22188.1 (splicing factor 3 subunit [Nannochloropsis gaditana])

HSP 1 Score: 334.0 bits (855), Expect = 2.900e-88
Identity = 149/172 (86.63%), Postives = 163/172 (94.77%), Query Frame = 0
Query:    1 MAKTCIADPCCCLASLVCPLPVACINRHRALEGKMEEYKCCQGYYPLCGMRPGEVGESSCPSLCLCLEATCCFTCAVSATRNYLMDKYSIHPDPMDYQIVRCSNAIQCLSCICSLASICIEDLREGARILRHIAHITFCTVQGCMQTQTAVEIAFQHKKGVEAPQANRMNDR 173
            M+KTCIADPCCCLASLVCPLPVAC+NRHRALEG M+EYKCCQGYYPLCG R GEVGES+CPS+CLCLEATCCFTCAVSATRNYLMDKY IHPDPMDYQI+RCSNA+QCL+CICSLASIC++DLREGARILRH+AHITFCTVQGCMQTQ+AVEIAFQ KKGV+AP  N + DR
Sbjct:   39 MSKTCIADPCCCLASLVCPLPVACVNRHRALEGNMDEYKCCQGYYPLCGFRAGEVGESTCPSMCLCLEATCCFTCAVSATRNYLMDKYRIHPDPMDYQIIRCSNAMQCLACICSLASICVKDLREGARILRHVAHITFCTVQGCMQTQSAVEIAFQEKKGVQAPTVNAIQDR 210          
BLAST of NO20G00740 vs. NCBI_GenBank
Match: CBJ32733.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 161.0 bits (406), Expect = 3.300e-36
Identity = 79/156 (50.64%), Postives = 103/156 (66.03%), Query Frame = 0
Query:    1 MAKTCIADPCCCLASLVCPLPVACINRHRALEGKMEEYKCCQGYYPLCGMRPGEVGESSCPSLCLCLEATCCFTCAVSATRNYLMDKYSIHPDPMDYQIVRCSNAIQCLSCICSLASICIEDLREGARILRHIAHITFCTVQGCMQTQTAVEIAFQ 157
            M   C   P  C   L C      I R RAL+G +E Y CCQGYYP+C M  G+ GE SCP  CLCLE+ CC +CAVS++R YLMDK+S+ PDP D +I+R +N +Q LSCIC++A+ICIE++RE ARI+  IA + + T  GCM  Q   E+ +Q
Sbjct:   33 MEAPCKNCPWFCFGCL-CTCCAQFIVRKRALDGNLENYLCCQGYYPMCCMSAGDCGERSCPCFCLCLESFCCNSCAVSSSRMYLMDKFSVMPDPWDNRIIRFNNFLQLLSCICNIAAICIEEIRELARIIDLIADLVYMTTVGCMTGQMIYEMDYQ 187          
BLAST of NO20G00740 vs. NCBI_GenBank
Match: XP_008905800.1 (hypothetical protein PPTG_11239 [Phytophthora parasitica INRA-310] >ETI46731.1 hypothetical protein F443_08916 [Phytophthora parasitica P1569] >ETK86653.1 hypothetical protein L915_08749 [Phytophthora parasitica] >ETL93210.1 hypothetical protein L917_08580 [Phytophthora parasitica] >ETM46483.1 hypothetical protein L914_08628 [Phytophthora parasitica] >ETN09239.1 hypothetical protein PPTG_11239 [Phytophthora parasitica INRA-310] >ETO75428.1 hypothetical protein F444_08983 [Phytophthora parasitica P1976] >ETP16524.1 hypothetical protein F441_08892 [Phytophthora parasitica CJ01A1] >ETP44582.1 hypothetical protein F442_08857 [Phytophthora parasitica P10297] >KUF79950.1 hypothetical protein AM587_10007986 [Phytophthora nicotianae])

HSP 1 Score: 159.1 bits (401), Expect = 1.300e-35
Identity = 82/160 (51.25%), Postives = 99/160 (61.88%), Query Frame = 0
Query:    7 ADPCCCLASLVCPLPVACINRHRALEGKMEEYKCCQGYYP--LCGMRPGEVGESSCPSLCLCLEATCCFTCAVSATRNYLMDKYSIHPDPMDYQIVRCSNAIQCLSCICSLASICIEDLREGARILRHIAHITFCTVQGCMQTQTAVEIAFQHKKGVEAP 165
            ADP CCL S +CP     I R +AL   M  Y CCQGY    +   R G  GESSCP+ CLCLEA CC  CAVSATR  +MD+Y + PD  D +I+RC+N IQ  SCICSL SICI +L + A I+  IA  T+ T QGCM  Q  VE+  + +K  E P
Sbjct:   32 ADPLCCLGSCLCPCCAQIIIRRKALNYDMSNYTCCQGYMDGIVPCARSGRCGESSCPNCCLCLEAFCCNGCAVSATRMMVMDRYRLQPDKWDNRIIRCNNCIQLASCICSLLSICISELGDLADIMNCIAQCTYATTQGCMTAQVNVELR-EREKAFEVP 190          
BLAST of NO20G00740 vs. NCBI_GenBank
Match: XP_009520435.1 (hypothetical protein PHYSODRAFT_350080 [Phytophthora sojae] >EGZ25147.1 hypothetical protein PHYSODRAFT_350080 [Phytophthora sojae])

HSP 1 Score: 156.8 bits (395), Expect = 6.300e-35
Identity = 81/160 (50.62%), Postives = 99/160 (61.88%), Query Frame = 0
Query:    7 ADPCCCLASLVCPLPVACINRHRALEGKMEEYKCCQGYYP--LCGMRPGEVGESSCPSLCLCLEATCCFTCAVSATRNYLMDKYSIHPDPMDYQIVRCSNAIQCLSCICSLASICIEDLREGARILRHIAHITFCTVQGCMQTQTAVEIAFQHKKGVEAP 165
            ADP CCL S +CP     + R +AL   M  Y CCQGY    +   R G  GESSCP+ CLCLEA  C  CAVSATR  +MD+Y + PD  D +I+RC+N IQ  SCICSL SICI +L + A I+  IA  T+ T QGCM  Q  VE+  + +KG E P
Sbjct:   32 ADPLCCLGSCLCPCCAQIVIRRKALNYDMSNYTCCQGYMDGIVPCARSGRCGESSCPNCCLCLEAFFCNGCAVSATRMMVMDRYRLQPDKWDNRIIRCNNCIQLASCICSLLSICISELGDLADIMNCIAQCTYATTQGCMTAQVNVELR-EREKGFEVP 190          
BLAST of NO20G00740 vs. NCBI_GenBank
Match: OWZ19583.1 (hypothetical protein PHMEG_0006149 [Phytophthora megakarya])

HSP 1 Score: 156.4 bits (394), Expect = 8.200e-35
Identity = 81/155 (52.26%), Postives = 97/155 (62.58%), Query Frame = 0
Query:    1 MAKTCIADPCCCLASLVCPLPVACINRHRALEGKMEEYKCCQGYYP--LCGMRPGEVGESSCPSLCLCLEATCCFTCAVSATRNYLMDKYSIHPDPMDYQIVRCSNAIQCLSCICSLASICIEDLREGARILRHIAHITFCTVQGCMQTQTAVEI 154
            M K   ADP CCL+S +CP     I R +AL   M  Y CCQGY    +   R G  GESSCP+ CLCLEA CC  CAVSATR  +MD+Y + PD  D +I+RC+N IQ  SCICSL SICI +L + A I+  IA  T+ T QGCM  Q  VE+
Sbjct:   26 MMKAPGADPLCCLSSCLCPCCAQIIIRRKALNYDMSNYTCCQGYMDGIVPCARSGRCGESSCPNCCLCLEAFCCNGCAVSATRMMVMDRYRLQPDKWDNRIIRCNNCIQLASCICSLLSICISELGDLADIMNCIAQCTYATTQGCMTAQVNVEL 180          
BLAST of NO20G00740 vs. NCBI_GenBank
Match: XP_024584893.1 (splicing factor 3 subunit [Plasmopara halstedii] >CEG48524.1 splicing factor 3 subunit [Plasmopara halstedii])

HSP 1 Score: 150.6 bits (379), Expect = 4.500e-33
Identity = 73/144 (50.69%), Postives = 94/144 (65.28%), Query Frame = 0
Query:    7 ADPCCCLASLVCPLPVACINRHRALEGKMEEYKCCQGYYP--LCGMRPGEVGESSCPSLCLCLEATCCFTCAVSATRNYLMDKYSIHPDPMDYQIVRCSNAIQCLSCICSLASICIEDLREGARILRHIAHITFCTVQGCMQTQ 149
            ADP CCL+S +CP     I R +AL   M  Y CCQGY    +  +R G  GES+CP+ CLCLE+ CC  CAVSATR  +MD+Y + PD  D +I+RC+N IQ +SC+CSL SICI +L + A ++  IA  T+ T QGCM  Q
Sbjct:   32 ADPLCCLSSCLCPCCAQVIIRRKALNYDMSNYTCCQGYMDGVVPCVRSGSCGESNCPNCCLCLESFCCNGCAVSATRMLVMDRYRLQPDKWDNRIIRCNNCIQLVSCVCSLLSICISELGDLADLMYCIAQCTYATTQGCMTAQ 175          
BLAST of NO20G00740 vs. NCBI_GenBank
Match: XP_005824613.1 (hypothetical protein GUITHDRAFT_116269 [Guillardia theta CCMP2712] >EKX37633.1 hypothetical protein GUITHDRAFT_116269 [Guillardia theta CCMP2712])

HSP 1 Score: 148.3 bits (373), Expect = 2.200e-32
Identity = 69/147 (46.94%), Postives = 93/147 (63.27%), Query Frame = 0
Query:    7 ADPCCCLASLVCPLPVACINRHRALEGKMEEYKCCQGYYPLCGMRPGEVGESSCPSLCLCLEATCCFTCAVSATRNYLMDKYSIHPDPMDYQIVRCSNAIQCLSCICSLASICIEDLREGARILRHIAHITFCTVQGCMQTQTAVEI 154
            A+P CCLA L+CP P AC  R +AL+  M  YKCCQGYY  C  + G  GESSCP LC  LEA  CF+C++S+TR  +MD   I PDP D +++  +N +Q LSCIC++ ++ IE+L   A ++  IA + F  V  CM  Q   E+
Sbjct:   32 ANPLCCLAGLLCPCPSACFIRRQALDTDMTRYKCCQGYYDFCCFQAGNFGESSCPDLCNGLEALLCFSCSISSTRMLVMDTRDIRPDPCDNRLIGLNNCLQLLSCICNILAMFIEELEALADLVDFIADVVFALVSSCMIAQVNYEL 178          
BLAST of NO20G00740 vs. NCBI_GenBank
Match: XP_005824612.1 (hypothetical protein GUITHDRAFT_165451 [Guillardia theta CCMP2712] >EKX37632.1 hypothetical protein GUITHDRAFT_165451 [Guillardia theta CCMP2712])

HSP 1 Score: 147.5 bits (371), Expect = 3.800e-32
Identity = 70/153 (45.75%), Postives = 94/153 (61.44%), Query Frame = 0
Query:    1 MAKTCIADPCCCLASLVCPLPVACINRHRALEGKMEEYKCCQGYYPLCGMRPGEVGESSCPSLCLCLEATCCFTCAVSATRNYLMDKYSIHPDPMDYQIVRCSNAIQCLSCICSLASICIEDLREGARILRHIAHITFCTVQGCMQTQTAVEI 154
            M     A+P CCLA L+CP P AC  R +AL+  M  YKCCQGYY  C  + G  GESSCP LC  LEA  CF+C++S+TR  +MD   I PDP D +++  +N +Q LSCIC++ ++ IE+L   A ++  IA + F  V  CM  Q   E+
Sbjct:   26 MCNAPCANPLCCLAGLLCPCPSACFIRRQALDTDMTRYKCCQGYYDFCCFQAGNFGESSCPDLCNGLEALLCFSCSISSTRMLVMDTRDIRPDPCDNRLIGLNNCLQLLSCICNILAMFIEELEALADLVDFIADVVFALVSSCMIAQVNYEL 178          
BLAST of NO20G00740 vs. NCBI_GenBank
Match: CBJ32732.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 147.1 bits (370), Expect = 5.000e-32
Identity = 69/145 (47.59%), Postives = 93/145 (64.14%), Query Frame = 0
Query:    1 MAKTCIADPCCCLASLVCPLPVACINRHRALEGKMEEYKCCQGYYPLCGMRPGEVGESSCPSLCLCLEATCCFTCAVSATRNYLMDKYSIHPDPMDYQIVRCSNAIQCLSCICSLASICIEDLREGARILRHIAHITFCTVQGCM 146
            M   C   P C    L C      I R RAL+G +  Y CCQGY+P+C   PG+ GE  CP  CLC+E+  C +CAVS++R YLMDK+ + PDP D +I+R +NA+Q LSCIC +A+IC+ ++RE ARI+  IA + + T  GCM
Sbjct:   33 MEAPCKNCPWCTFGCL-CMCCAQFIVRKRALDGNLANYVCCQGYFPMCCFEPGDCGERDCPCFCLCMESFACTSCAVSSSRMYLMDKFGVQPDPWDNRIIRFNNALQVLSCICHIAAICVREVRELARIIDLIADLVYMTTVGCM 176          
BLAST of NO20G00740 vs. NCBI_GenBank
Match: GBG29468.1 (Hypothetical Protein FCC1311_056892 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 143.3 bits (360), Expect = 7.200e-31
Identity = 73/161 (45.34%), Postives = 99/161 (61.49%), Query Frame = 0
Query:   11 CCLASLVCPLPVACINRHRALEGKMEEYKCCQGYYPLCGMRPGEVGESSCPSLCLCLEATCCFTCAVSATRNYLMDKYSIHPDPMDYQIVRCSNAIQCLSCICSLASICIEDL-----REGARILRHIAHITFCTVQGCMQTQTAVEIAFQHKKGVEAPQA 167
            CC  +  CP+  A   R RAL   M  Y+CCQGY   C + PG +GE +CP  CLC+E  CC +C++SATR  +MD+YSI  DP D +I+R +N +Q LSC+ +L SICIE+L     RE A+I+  IA I +    GCM  Q   E+ F+ K+G + P A
Sbjct:   43 CCYGAF-CPVCAAYQLRTRALGYNMNNYRCCQGYLQFCCISPGNMGEENCPEFCLCMEVCCCLSCSISATRFMIMDQYSIVSDPCDNRIIRFNNFMQILSCVLNLLSICIEELYVRIFREAAQIVDLIAKIVYMVTFGCMAAQMKSEMEFREKQG-QGPNA 201          
The following BLAST results are available for this feature:
BLAST of NO20G00740 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22188.12.900e-8886.63splicing factor 3 subunit [Nannochloropsis gaditan... [more]
CBJ32733.13.300e-3650.64conserved unknown protein [Ectocarpus siliculosus][more]
XP_008905800.11.300e-3551.25hypothetical protein PPTG_11239 [Phytophthora para... [more]
XP_009520435.16.300e-3550.63hypothetical protein PHYSODRAFT_350080 [Phytophtho... [more]
OWZ19583.18.200e-3552.26hypothetical protein PHMEG_0006149 [Phytophthora m... [more]
XP_024584893.14.500e-3350.69splicing factor 3 subunit [Plasmopara halstedii] >... [more]
XP_005824613.12.200e-3246.94hypothetical protein GUITHDRAFT_116269 [Guillardia... [more]
XP_005824612.13.800e-3245.75hypothetical protein GUITHDRAFT_165451 [Guillardia... [more]
CBJ32732.15.000e-3247.59conserved unknown protein [Ectocarpus siliculosus][more]
GBG29468.17.200e-3145.34Hypothetical Protein FCC1311_056892 [Aurantiochytr... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL024nonsL024Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL022nonsL022Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR068ngnoR068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002568NSK002568Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G00740.2NO20G00740.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO20G00740.1NO20G00740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594467gene_6288Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G00740.2NO20G00740.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO20G00740.1NO20G00740.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G00740 ID=NO20G00740|Name=NO20G00740|organism=Nannochloropsis oceanica|type=gene|length=2202bp
GAGTTGCTGCAGACCTATCTACTGCCAAGGGATGGGAACGGGGTGAGGAG
GGTGAGACTTACATGGTGATGATGATGCAGCAGAGGGACAGGACATAGAC
ACAAGAGGTGAAACGATCCTAACTCAAAGTCAACTGACAGGCTTGTTCTG
CGTGTATATGAGGCGGAGGAGGCGTGTGTGGGCATGAGGATGAAGGGGGC
TGGAGGGGAGGAGGACATGGGCGTTGCCACCGTGATAATTTGCTCTCCTT
CACGGATGGGGGAAGGCTAAGGCAAGCGCTTGGACACGTTGCGTGTGTGC
CTCTTATAAAAACCCACGGACTCACACGTGATACACAGACACGCACAGGG
ACAGTCAAGACGACATTCTCCGCGGGCCCCGGAGTTGGTGCTGGTAGGCC
TTTTGTCCAAAAGGCCCGATCGCCAGACAAGACTTCCTTCCGCGATTTAT
CAAGCTCAAGCCCGACAGCCGCCCACCCACCACACTCACTCACAAACCAC
GTCCTCAAACCGCACAGGCAACGCCCCTACCTACCCTGAGCAGTCTGAAA
CTATGAGCATCTGCTTTCTCTGTTTCCCCGACGACGTTATTCCgtacgtg
catggcctaggtggttgtagttgttccccgcttgtataaagcattataaa
tataaagtatatacatggtcgtgtaggggtgcttcacctgattttacgtg
cataaatgtaaataaaagtgccaaaatctcccttcttttacaccgatact
ttctcccctttcccttcacccgatactctatctctcccttcccttttccc
ttacaacacaccaaagCGGCTATGCGCGGTCGGACAATCCCTACACATTT
CAGGTGTCCATGGCCAAGACCTGCATTGCAGACCCGTGCTGCTGCCTAGC
CTCGTTGGTATGTCCCTTGCCTGTGGCGTGTATCAACCGGCACAGGGCGT
TGGAGGGGAAGATGGAAGAGTACAAATGTTGTCAAGGgtgagtgacttga
agagggattgtgtagatatagcattttggagaaaatgattagtgttgtgc
ctctcgcagtgattggtggtaccgcatttctcacctcccaacatgtgtga
ctactagtaccgcgaatcacccattcacgcatgatggatcgtgctattcc
tccctcagatccactgacaaagtccttcctcatacatcccttccttgtac
aatccgccctctgcgctgtaccctgggaggagataggcggaaaatgatct
gtagcagcatcccttcgctctcctgtcatccctctctcagtaaacgtaga
tgagagtccctctcctgacctccatctccatgcattgtatacctaaacat
tcacactcatgcctacatatatatcactttaaaagGTATTACCCCCTCTG
CGGTATGCGCCCCGGCGAGGTGGGTGAAAGCTCTTGCCCAAGCCTCTGTC
TGTGCTTGGAAGCCACCTGCTGCTTCACATGCGCCGTGTCGGCAACTCGA
AATTACTTGATGGACAAGTACAGCATTCATCCGGACCCGATGGACTATCA
GATCGgtagggaggagagggagggagggaaggagggagggaggaagagac
caataattctttggataagggtcgagggcgatgtgagacctgtcaatatt
tcaagcgtcctgctttccaccttccctctcaccctccctcgctgcctccc
tccctgcagTCCGATGCAGTAACGCTATCCAATGCCTCTCCTGCATTTGC
TCCCTGGCTTCTATCTGTATCGAGGACCTTAGGGAAGGCGCGCGGATTCT
GCGGCATATCGCACATATCACCTTCTGCACCGTGCAAGGCTGCATGCAGg
tgaggcaggcagggagggagggagggagggttatggtttctctccttttc
gactctctttctttcttcttggagccgcctcctccatttatcggtcacct
gtttccctctccctttatttcatcctccaacttccaacttctccctccct
cctcccttcccccctccctccctccctccgttagACGCAAACCGCTGTCG
AGATTGCCTTCCAGCACAAAAAAGGTGTTGAGGCCCCTCAGGCTAACAGA
ATGAATGATCGCTTTTAGGCTCAAGTAGGGAGGGAGGGAGGGAATGATCG
AGGGAGGGAGGGAAGTGTGTGGTATGGAGAAGATACACGATGGCGGAAGG
GA
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protein sequence of NO20G00740.2

>NO20G00740.2-protein ID=NO20G00740.2-protein|Name=NO20G00740.2|organism=Nannochloropsis oceanica|type=polypeptide|length=174bp
MAKTCIADPCCCLASLVCPLPVACINRHRALEGKMEEYKCCQGYYPLCGM
RPGEVGESSCPSLCLCLEATCCFTCAVSATRNYLMDKYSIHPDPMDYQIV
RCSNAIQCLSCICSLASICIEDLREGARILRHIAHITFCTVQGCMQTQTA
VEIAFQHKKGVEAPQANRMNDRF*
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protein sequence of NO20G00740.1

>NO20G00740.1-protein ID=NO20G00740.1-protein|Name=NO20G00740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=202bp
MSICFLCFPDDVIPGYARSDNPYTFQVSMAKTCIADPCCCLASLVCPLPV
ACINRHRALEGKMEEYKCCQGYYPLCGMRPGEVGESSCPSLCLCLEATCC
FTCAVSATRNYLMDKYSIHPDPMDYQIVRCSNAIQCLSCICSLASICIED
LREGARILRHIAHITFCTVQGCMQTQTAVEIAFQHKKGVEAPQANRMNDR
F*
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Synonyms
Publications