NO20G00730, NO20G00730 (gene) Nannochloropsis oceanica

Overview
NameNO20G00730
Unique NameNO20G00730
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1862
Alignment locationchr20:246596..248786 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:246596..248786 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0000124SAGA complex
Vocabulary: INTERPRO
TermDefinition
IPR037802SGF29
IPR010750SGF29_tudor-like_dom
Homology
The following BLAST results are available for this feature:
BLAST of NO20G00730 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL024nonsL024Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL022nonsL022Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR068ngnoR068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002567NSK002567Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G00730.1NO20G00730.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO20G00730.2NO20G00730.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|89338gene_6287Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G00730.1NO20G00730.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO20G00730.2NO20G00730.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G00730 ID=NO20G00730|Name=NO20G00730|organism=Nannochloropsis oceanica|type=gene|length=1862bp
ATGGAGATACGTGTCAGACAAGTAGCGgtatgcatttgttacactttttt
tttgggaggttctagtgatacttgtccgaaatgctctcctcacaccaacc
catcttaccatgccccatccctccttccctccgctccctccctccctcac
tcccacactccaactccacaagGCCTCCCTCCTCCAAGAGGAAGGCGGAG
GACCCGATAATTTTTTTGCCATGACCCGCACACTTTCTCGGCTCAAAGAA
CAAGCCGCAATGAACACCCTTGCCTTCCAACGAGGCCGAGGCGACAGCGG
CGGCAGCGGAGGAGTAAGAGGTGTTGAGGGCCTGGGACCGGATTCCGTGA
CATTAAAGCAGATGAGAGCAACATTGGTGAACACGGCAAGGTGCTGTGGA
AGAATAGCGCACGAGGCAGAGGCATGTCTAGAGCTGCTAAAGCAGGAGCA
GGAGCAGGAGCATCAGGGAGGAGGGGGTGGAGGGACGAAGAAGGAGAGTG
GAAGGAGAGGAGGAGGAGGGGGAAGAATGGAGAAAGGGATGGAGGAAGAG
GAGATGGACGAGATGATGATGTTTGCACAACAATCgtacgacggcagctc
gagccacctcttcctccccgccctcccccctccctcccttccccttcctc
cctcccttcccacccttcttcgactccatcccaccagggcccccgaggga
cattgagcacacacacgtccggtggcgccagCACCAGCACCAGCACCAGC
ACCAGCACCAGCACCAGCGAAACCAGCAATACTGCTGTCATCCTTGCCAA
GCAAGGTCGAAGGCTCGCGGCGATCGTCCACAAGGCCCGGCAAACACGGG
AGGGCGGAAGGGAGGAAGGGGGGGAGGAACCCCGTCCCTCCTCCTCATTC
TTCAAGCCGGTCAAACTCCCACATCTGGATCGGGCGCCGGAAGAAGGTGA
TGAGGCCGCTGCGAAGGTCTCCCCTGACGCAGCTGCCTGGGCGCTAACCA
CCGTCTTGGCCTTCAATATGGTCACGGACAAGgtacattcacatctccct
ccctccctccctcccttcctccctacctccctccctcgtccatcgtccag
ggtcatgttgcctccatcccccctccatccccccccctttcctccctccc
tccctccccccttccctcccttcctcagGTGGAAGTTGTGGACTTGGACG
ATGTCCGGCGACGCTCGTACCTCATCGAGAGGAAAGACGTGATGCTCCTC
CCCCGTCCTCATGCAGGAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGG
AGGGAAAGCGGAAGGGAAGAAACGGTCAGGCGGAGAGGCGGTGCCAAAGT
ACTACCCGAAGGAGTCGAGGGTGTTTGCCCTGTATCCTGGAACGACGgtg
agggagggagggagggagggagggagggtgggagtggaatggagcattgt
tttcttccggaaatcatctttccccctctccctttgttgtcgtttctaat
gcctcttctcgccttggtgtttgtcgtcccgtttctgttgttggtgtttg
tcgtcccgtttctcgccttggtgtttgtcgtcccgtttctgttgttggtg
ttcctcatctcttttctccttccatcccatcccggcctctcgaccttttt
ccagTGTTTCTATCCAGCCGTCGTCGTGTCCTCCCTCCCTCCCTCCCTCC
CGCCCTCCTCCTCTTCAGAGCCGGGGAGGGAGGGAGGGAGGGAGGAAGCG
ATGTGCGCCCTATGGTTCGACGACGACGAAGACGAGAGGGGTAACCCCAA
CGTGGTTGAGGTACGGAGGAAGGGAGGAAGGGAGGGAGGGCATGATTCCG
CATGAATCCAGG
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protein sequence of NO20G00730.1

>NO20G00730.1-protein ID=NO20G00730.1-protein|Name=NO20G00730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=387bp
MEIRVRQVAASLLQEEGGGPDNFFAMTRTLSRLKEQAAMNTLAFQRGRGD
SGGSGGVRGVEGLGPDSVTLKQMRATLVNTARCCGRIAHEAEACLELLKQ
EQEQEHQGGGGGGTKKESGRRGGGGGRMEKGMEEEEMDEMMMFAQQSTST
STSTSTSTSETSNTAVILAKQGRRLAAIVHKARQTREGGREEGGEEPRPS
SSFFKPVKLPHLDRAPEEGDEAAAKVSPDAAAWALTTVLAFNMVTDKVEV
VDLDDVRRRSYLIERKDVMLLPRPHAGGGEGGGGGGGGGKAEGKKRSGGE
AVPKYYPKESRVFALYPGTTCFYPAVVVSSLPPSLPPSSSSEPGREGGRE
EAMCALWFDDDEDERGNPNVVEVRRKGGREGGHDSA*
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protein sequence of NO20G00730.2

>NO20G00730.2-protein ID=NO20G00730.2-protein|Name=NO20G00730.2|organism=Nannochloropsis oceanica|type=polypeptide|length=385bp
MEIRVRQVAASLLQEEGGGPDNFFAMTRTLSRLKEQAAMNTLAFQRGRGD
SGGSGGVRGVEGLGPDSVTLKQMRATLVNTARCCGRIAHEAEACLELLKQ
EQEQEHQGGGGGGTKKESGRRGGGGGRMEKGMEEEEMDEMMMFAQQSTST
STSTSTSTSETSNTAVILAKQGRRLAAIVHKARQTREGGREEGGEEPRPS
SSFFKPVKLPHLDRAPEEGDEAAAKVSPDAAAWALTTVLAFNMVTDKVEV
VDLDDVRRRSYLIERKDVMLLPRPHAGGGEGGGGGGGGGKAEGKKRSGGE
AVPKYYPKESRVFALYPGTTCFYPAVVVSSLPPSLPPSSSSEPGREGGRE
EAMCALWFDDDEDERGNPNVVEVPFKYITMVPEE*
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Synonyms
Publications