NO20G00720, NO20G00720 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO20G00720 vs. NCBI_GenBank
Match: EWM22191.1 (60s ribosomal protein l13 [Nannochloropsis gaditana]) HSP 1 Score: 349.7 bits (896), Expect = 6.000e-93 Identity = 176/203 (86.70%), Postives = 187/203 (92.12%), Query Frame = 0 Query: 1 MVRHNNVIPNQHFHKDWQNRVKTWFDQPAKKKARRLARKAKAAAIAPRPTQLLRPVVHPPTQRYNHKTRLGKGFSMQELKEAGITKSYAKSVGIAVDHRRTNLSVESLQANVQRLKEYKSKLIVFPIGRVKKPKAGDSTTAECRAAIQTTGTIQPLPTGKKPVEFVSVSEELKKFRAYTHLRVVVNEAKLAGIRRGKAAEGDK 204 MVRHNNVIPNQHFHKDWQ RVKTWFDQPAKKKARRLARKAKAAA+APRPTQLLRPVVH PTQRYNHKTRLG+GF+MQELKE G+TK YAKSVGIAVDHRRTNLSVESLQANVQRLKEYKSKLIVFP+GRVKKPKAGDS+TAECRAA+Q TGT+ PLPTGKK VEFVSVSEELK FRA+T LRV N+ KL GIRRGKA + K Sbjct: 1 MVRHNNVIPNQHFHKDWQTRVKTWFDQPAKKKARRLARKAKAAALAPRPTQLLRPVVHAPTQRYNHKTRLGRGFTMQELKEVGLTKKYAKSVGIAVDHRRTNLSVESLQANVQRLKEYKSKLIVFPMGRVKKPKAGDSSTAECRAAVQATGTVLPLPTGKKAVEFVSVSEELKNFRAHTALRVARNDQKLDGIRRGKALKAGK 203
BLAST of NO20G00720 vs. NCBI_GenBank
Match: XP_005853485.1 (large subunit ribosomal protein L13e [Nannochloropsis gaditana CCMP526] >EKU22873.1 large subunit ribosomal protein L13e [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 347.8 bits (891), Expect = 2.300e-92 Identity = 176/203 (86.70%), Postives = 187/203 (92.12%), Query Frame = 0 Query: 1 MVRHNNVIPNQHFHKDWQNRVKTWFDQPAKKKARRLARKAKAAAIAPRPTQLLRPVVHPPTQRYNHKTRLGKGFSMQELKEAGITKSYAKSVGIAVDHRRTNLSVESLQANVQRLKEYKSKLIVFPIGRVKKPKAGDSTTAECRAAIQTTGTIQPLPTGKKPVEFVSVSEELKKFRAYTHLRVVVNEAKLAGIRRGKAAEGDK 204 MVRHNNVIPNQHFHKDWQ RVKTWF QPAKKKARRLARKAKAAA+APRPTQLLRPVVH PTQRYNHKTRLG+GF+MQELKEAG+TK YAKSVGIAVDHRRTNLSVESLQANVQRLKEYKSKLIVFP+GRVKKPKAGDS+TAECRAA+Q TGT+ PLPTGKK VEFVSVSEELK FRA+T LRV N+ KL GIRRGKA + K Sbjct: 1 MVRHNNVIPNQHFHKDWQTRVKTWFVQPAKKKARRLARKAKAAALAPRPTQLLRPVVHAPTQRYNHKTRLGRGFTMQELKEAGLTKKYAKSVGIAVDHRRTNLSVESLQANVQRLKEYKSKLIVFPMGRVKKPKAGDSSTAECRAAVQATGTVLPLPTGKKAVEFVSVSEELKNFRAHTALRVARNDQKLDGIRRGKALKAGK 203
BLAST of NO20G00720 vs. NCBI_GenBank
Match: OQR96435.1 (hypothetical protein THRCLA_07284 [Thraustotheca clavata]) HSP 1 Score: 237.3 bits (604), Expect = 4.300e-59 Identity = 122/201 (60.70%), Postives = 150/201 (74.63%), Query Frame = 0 Query: 1 MVRHNNVIPNQHFHKDWQNRVKTWFDQPAKKKARRLARKAKAAAIAPRPTQ-LLRPVVHPPTQRYNHKTRLGKGFSMQELKEAGITKSYAKSVGIAVDHRRTNLSVESLQANVQRLKEYKSKLIVFPIGRVKKPKAGDSTTAECRAAIQTTGTIQPLPTGKKPVEFVSVSEELKKFRAYTHLRVVVNEAKLAGIRRGKAAE 201 MV+HNNVIPN HFHKDWQNR+KTWFDQ +KKK+RRL RKAKAAAIAPRP LLRP VH PT +Y K R G+GF++ ELKEAGI++ A ++GIAVD+RRTN SVESLQANVQRLK YKSKL+VFP R KPK GDST E + A+Q TG I P+ K + +++++KK LR+ +A+L G+R+ KAAE Sbjct: 1 MVKHNNVIPNGHFHKDWQNRIKTWFDQASKKKSRRLTRKAKAAAIAPRPAAGLLRPAVHCPTVKYGSKVRAGRGFTLDELKEAGISRKQALTIGIAVDYRRTNKSVESLQANVQRLKTYKSKLVVFPRKRASKPKHGDSTLEETKNAVQHTGAILPIARVSKDIATAKITDDMKKTSVVNTLRLARADARLVGLRKKKAAE 201
BLAST of NO20G00720 vs. NCBI_GenBank
Match: CBJ27745.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 236.1 bits (601), Expect = 9.600e-59 Identity = 123/204 (60.29%), Postives = 148/204 (72.55%), Query Frame = 0 Query: 1 MVRHNNVIPNQHFHKDWQNRVKTWFDQPAKKKARRLARKAKAAAIAPRPTQLLRPVVHPPTQRYNHKTRLGKGFSMQELKEAGITKSYAKSVGIAVDHRRTNLSVESLQANVQRLKEYKSKLIVFPIGRVKKPKAGDSTTAECRAAIQTTGTIQPLPTGKKPVEFVSVSEELKKFRAYTHLRVVVNEAKLAGIRRGKAAEGDKE 205 MV+HNNV+PN HFHK WQ RV+TWFDQPAKKKARR AR+ KAA +APRPTQLLRP VH PT +YN K RLG+GF+++ELKEAGI+K A ++GIAVDHRRTN S ES ANV RLKEY++ LI+FP G PK GDS+ E +AA Q TG PL KPVEF+ V+ E+ ++ RV NE KLAGIR + E K+ Sbjct: 1 MVKHNNVVPNGHFHKKWQRRVRTWFDQPAKKKARRQARQEKAAKMAPRPTQLLRPAVHCPTIKYNSKVRLGRGFNVEELKEAGISKKTALTIGIAVDHRRTNKSEESFAANVARLKEYRANLIIFPRGSKHLPKKGDSSLEEQKAATQVTGVTMPLVKADKPVEFLPVTAEMTATSLHSERRVARNEFKLAGIRIRQKEEKTKK 204
BLAST of NO20G00720 vs. NCBI_GenBank
Match: XP_008613112.1 (50S ribosomal protein L13e [Saprolegnia diclina VS20] >EQC33472.1 50S ribosomal protein L13e [Saprolegnia diclina VS20]) HSP 1 Score: 233.4 bits (594), Expect = 6.200e-58 Identity = 120/201 (59.70%), Postives = 148/201 (73.63%), Query Frame = 0 Query: 1 MVRHNNVIPNQHFHKDWQNRVKTWFDQPAKKKARRLARKAKAAAIAPRPTQ-LLRPVVHPPTQRYNHKTRLGKGFSMQELKEAGITKSYAKSVGIAVDHRRTNLSVESLQANVQRLKEYKSKLIVFPIGRVKKPKAGDSTTAECRAAIQTTGTIQPLPTGKKPVEFVSVSEELKKFRAYTHLRVVVNEAKLAGIRRGKAAE 201 MV+HNNVIPN HFHKDWQNR+KTWFDQ AKKK+RRL RKAKAAAIAPRP LLRP VH PT +Y K R G+GF++ ELKEAGI++ A S+GIAVD+RRTN SVESLQANVQRLK YKSKL+VFP R KPK GD++ + +AA+Q TG + P+ V +++ +K LR+ +A+L G+R+ KAAE Sbjct: 1 MVKHNNVIPNGHFHKDWQNRIKTWFDQAAKKKSRRLTRKAKAAAIAPRPAAGLLRPAVHCPTVKYGSKVRAGRGFTLDELKEAGISRKQALSIGIAVDYRRTNKSVESLQANVQRLKAYKSKLVVFPRKRASKPKQGDASVEDIKAAVQHTGALFPIARASTEVATAKITDAMKNESVVKTLRLAKADARLVGLRKKKAAE 201
BLAST of NO20G00720 vs. NCBI_GenBank
Match: OQS01261.1 (60S ribosomal protein L13 [Achlya hypogyna]) HSP 1 Score: 232.3 bits (591), Expect = 1.400e-57 Identity = 119/201 (59.20%), Postives = 148/201 (73.63%), Query Frame = 0 Query: 1 MVRHNNVIPNQHFHKDWQNRVKTWFDQPAKKKARRLARKAKAAAIAPRPTQ-LLRPVVHPPTQRYNHKTRLGKGFSMQELKEAGITKSYAKSVGIAVDHRRTNLSVESLQANVQRLKEYKSKLIVFPIGRVKKPKAGDSTTAECRAAIQTTGTIQPLPTGKKPVEFVSVSEELKKFRAYTHLRVVVNEAKLAGIRRGKAAE 201 MV+HNNVIPN HFHKDWQNR+KTWFDQ AKKK+RRL RKAKAAAIAPRP LLRP VH PT +Y K R G+GF++ ELKEAGI++ A ++GIAVD+RRTN SVESLQANVQRLK YKSKL+VFP R+ KPK GD++ E ++ +Q G + P+ V ++EE+K LR+ +A+L G+R+ KAAE Sbjct: 1 MVKHNNVIPNGHFHKDWQNRIKTWFDQAAKKKSRRLTRKAKAAAIAPRPAAGLLRPAVHCPTVKYGSKVRAGRGFTLDELKEAGISRKQALTIGIAVDYRRTNKSVESLQANVQRLKAYKSKLVVFPRKRISKPKNGDASAEELKSVVQHKGALFPIARASTEVATAKITEEMKNDSVVKTLRLARADARLVGLRKKKAAE 201
BLAST of NO20G00720 vs. NCBI_GenBank
Match: XP_012205325.1 (50S ribosomal protein L13e [Saprolegnia parasitica CBS 223.65] >KDO24006.1 50S ribosomal protein L13e [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 229.9 bits (585), Expect = 6.900e-57 Identity = 118/201 (58.71%), Postives = 147/201 (73.13%), Query Frame = 0 Query: 1 MVRHNNVIPNQHFHKDWQNRVKTWFDQPAKKKARRLARKAKAAAIAPRPTQ-LLRPVVHPPTQRYNHKTRLGKGFSMQELKEAGITKSYAKSVGIAVDHRRTNLSVESLQANVQRLKEYKSKLIVFPIGRVKKPKAGDSTTAECRAAIQTTGTIQPLPTGKKPVEFVSVSEELKKFRAYTHLRVVVNEAKLAGIRRGKAAE 201 MV+HNNVIPN HFHKDWQNR+KTWFDQ AKKK+RRL RKAKAAAIAPRP LLRP VH PT +Y K R G+GF++ ELKEAGI++ A S+GIAVD+RRTN SVESLQANVQRLK YKSKL+VFP R KPK GD++ + +AA+Q TG + P+ V +++ +K LR+ +A+L G+R+ AA+ Sbjct: 1 MVKHNNVIPNGHFHKDWQNRIKTWFDQAAKKKSRRLTRKAKAAAIAPRPAAGLLRPAVHCPTVKYGSKVRAGRGFTLDELKEAGISRKQALSIGIAVDYRRTNKSVESLQANVQRLKAYKSKLVVFPRKRASKPKQGDASVEDIKAAVQHTGVLFPIARASTEVATAKITDAMKNESVVKTLRLAKADARLVGLRKKMAAD 201
BLAST of NO20G00720 vs. NCBI_GenBank
Match: GAX93222.1 (60S ribosomal protein L13 putative [Pythium insidiosum]) HSP 1 Score: 228.8 bits (582), Expect = 1.500e-56 Identity = 122/201 (60.70%), Postives = 145/201 (72.14%), Query Frame = 0 Query: 1 MVRHNNVIPNQHFHKDWQNRVKTWFDQPAKKKARRLARKAKAAAIAPRPTQ-LLRPVVHPPTQRYNHKTRLGKGFSMQELKEAGITKSYAKSVGIAVDHRRTNLSVESLQANVQRLKEYKSKLIVFPIGRVKKPKAGDSTTAECRAAIQTTGTIQPLPTGKKPVEFVSVSEELKKFRAYTHLRVVVNEAKLAGIRRGKAAE 201 MV+HNNVIPN HFHKDWQ R+KTWFDQ AKKKARRL RK KAAAIAPRP LLRP VH PT +Y K R GKGFS++ELKEAGI+K A S+GIAVD+RRTN SVESLQANVQRLK YK+KL++FP KPK GDST E A+Q TG I P+ E ++EE+K Y LRV +A++AG ++ + A+ Sbjct: 1 MVKHNNVIPNGHFHKDWQRRIKTWFDQAAKKKARRLRRKEKAAAIAPRPAAGLLRPAVHCPTVKYASKVRAGKGFSLEELKEAGISKKQALSIGIAVDYRRTNKSVESLQANVQRLKAYKAKLVIFPRKSNNKPKHGDSTPEETANAVQVTGPIFPIARKTVKSESAVITEEMKNTSVYAQLRVARADARIAGKQKKRLAD 201
BLAST of NO20G00720 vs. NCBI_GenBank
Match: XP_008872563.1 (hypothetical protein H310_08544 [Aphanomyces invadans] >ETV99135.1 hypothetical protein H310_08544 [Aphanomyces invadans]) HSP 1 Score: 226.5 bits (576), Expect = 7.600e-56 Identity = 117/200 (58.50%), Postives = 145/200 (72.50%), Query Frame = 0 Query: 2 VRHNNVIPNQHFHKDWQNRVKTWFDQPAKKKARRLARKAKAAAIAPRPTQ-LLRPVVHPPTQRYNHKTRLGKGFSMQELKEAGITKSYAKSVGIAVDHRRTNLSVESLQANVQRLKEYKSKLIVFPIGRVKKPKAGDSTTAECRAAIQTTGTIQPLPTGKKPVEFVSVSEELKKFRAYTHLRVVVNEAKLAGIRRGKAAE 201 ++HNNVIPN HFHKDWQNR+KTWFDQ +KKK+RRL RKAKAAAIAPRP LLRP VH PT +Y K R G+GF++ ELKEAGI++ A ++G++VD+RRTN SVESLQANVQRLK YKSKL++FP R KPKAGDS E + A Q G + P+ K V ++EELK LR+ +A+L G+R+ KA E Sbjct: 1 MKHNNVIPNGHFHKDWQNRIKTWFDQASKKKSRRLTRKAKAAAIAPRPAAGLLRPAVHCPTIKYGSKVRAGRGFTLDELKEAGISRKQALTIGVSVDYRRTNKSVESLQANVQRLKTYKSKLVLFPRKRASKPKAGDSKVEETKNATQLIGAVLPIARPSKEVPTAKITEELKNNSVVKTLRLARADARLVGLRKKKADE 200
BLAST of NO20G00720 vs. NCBI_GenBank
Match: ABK24025.1 (unknown [Picea sitchensis] >ABK27069.1 unknown [Picea sitchensis]) HSP 1 Score: 225.7 bits (574), Expect = 1.300e-55 Identity = 118/206 (57.28%), Postives = 146/206 (70.87%), Query Frame = 0 Query: 1 MVRHNNVIPNQHFHKDWQNRVKTWFDQPAKKKARRLARKAKAAAIAPRPTQ-LLRPVVHPPTQRYNHKTRLGKGFSMQELKEAGITKSYAKSVGIAVDHRRTNLSVESLQANVQRLKEYKSKLIVFP-IGRVKKPKAGDSTTAECRAAIQTTGTIQPLPTGKKPVEFVSVSEELKKFRAYTHLRVVVNEAKLAGIRRGKAAEGDKE 205 MV+HNNV+PN HF K WQN VKTWF+QPA+KK RR+AR+ KA I PRPT LRP+VH TQ+YN K R G+GFS++ELK AGI K YA ++GIAVDHRR N S+E LQ NVQRLK YK+KL+VFP R +K KAGDS+ E A Q GT P+ K VE + V++E+K F+AY LRV +L G+R KAAE +K+ Sbjct: 1 MVKHNNVVPNGHFKKHWQNYVKTWFNQPARKKRRRIARQKKAVKIFPRPTSGPLRPIVHGQTQKYNMKIRAGRGFSLEELKAAGIPKKYAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVVFPRSARARKLKAGDSSKEELATATQIQGTYMPISQEKPSVEIIKVTDEMKNFKAYAKLRVERMNKRLVGVRMKKAAEAEKD 206 The following BLAST results are available for this feature:
BLAST of NO20G00720 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO20G00720 ID=NO20G00720|Name=NO20G00720|organism=Nannochloropsis oceanica|type=gene|length=1861bpback to top protein sequence of NO20G00720.1 >NO20G00720.1-protein ID=NO20G00720.1-protein|Name=NO20G00720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=205bpback to top Synonyms
Publications
|