NO20G00670, NO20G00670 (gene) Nannochloropsis oceanica
|
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO20G00670 vs. NCBI_GenBank
Match: EWM22184.1 (Pentatricopeptide repeat containing protein [Nannochloropsis gaditana]) HSP 1 Score: 452.6 bits (1163), Expect = 3.600e-123 Identity = 386/764 (50.52%), Postives = 434/764 (56.81%), Query Frame = 0
Query: 208 WPVGDLTDVTQLRSVEGMIRESLGQLNATACLGALTACSRLHQPDKAAWIIQEMRRLGPRPDAGCYALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSG-GGAYATAIHAALAGKQHGKMLAVVEQMLDKGLEVEERLMHPMMGELVKEGKWEEGRQLLALARRGGRLTADLYARAVEACVXXXXXXXXXXXXXXXXXXXFLTHVIVSSPGVGSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEAAYQGAMSACRRAGQIERVFALLDLRDALAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPKPSTELYSLAFATAFEQERWDALPLLLKHMAGHGRRPDSSFFDELVRVLATSPTRRPSQTLATQIAALRRLPFXXXXXXXXXXXXXXXXXXXXXXXXXXXNTAIHACAAGGDWRLALDLLQELEGERLRPDYYS---------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEACDAGGEWKAAVKLVEEMRSKEGIRPDLYSFNTAIAACQKAGQVPQITRLLGRMEDLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERSGLDPDDRFFRVLLQKFRGEDAWRESI 938
WPVGDL DVTQLR++E + E G L+AT C GALTACSRLHQPDKAAWII++MR GP PD CYA G GGAYATA+H+ LA +++G+ML V+E+M+ +GL+VEERL+H +MG+LV+EG+W+E + +L LARR G+LTAD+Y +AVEACV FL HV V G + XXXXXXXX SEAA++GAMSACR+AG IERVF+LLDLRD+L + R PS ELY+LAFAT FEQERWDALP+LLKHMAGHGRRP+S FFDELVRVLATSPTRRPSQTLA+QI+ALRRLP NTAIHACAAGGDWRLALDLL EL+GE+LRPDYYS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXX +ACDAGGEWKAAVKLVE+MR KEGIRPDLYSFNTA++ACQKAGQV QITRLLGRME LQ ER GLDPD+RFFRVLLQKF GE W+ESI
Sbjct: 190 WPVGDLEDVTQLRNLERTVEEITGPLDATMCRGALTACSRLHQPDKAAWIIEKMRERGPPPDETCYATAIDTCARKGRWSVAVSLLSTMRHTDGLAVENPTFAVVMAACHRAGQTERVLALLTEMEEAGTGGGNRGGAYATAVHSTLASREYGEMLRVLERMIAQGLDVEERLIHLVMGDLVREGRWQEAKAMLDLARRAGKLTADIYVKAVEACVPEGQWAEAFRHLETMHQEGFLRHVRVPLDGATA---STMTLSSSPPSGPATLSSSRPYSSPGLDTTAPGTLANYGSGGAXXXXXXXXSSSNGLPHHGGAGSTGSNPLPMEASEAAFRGAMSACRQAGDIERVFSLLDLRDSLLD-----------KDLADYGHGPDPGRRQERRTPSMELYTLAFATCFEQERWDALPILLKHMAGHGRRPESVFFDELVRVLATSPTRRPSQTLASQISALRRLPL-----SQAQEGGTGVSVPCSSTLLLVFNTAIHACAAGGDWRLALDLLHELKGEKLRPDYYSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDRKKGXXXXXXXXXXXXXXXXXXAIKACDAGGEWKAAVKLVEDMRVKEGIRPDLYSFNTAVSACQKAGQVVQITRLLGRMEILQIRPNTYTFIMATATCLQTAAFDKLFEVFAAMERCGLDPDERFFRVLLQKFEGEGRWKESI 934
BLAST of NO20G00670 vs. NCBI_GenBank
Match: XP_005854535.1 (hypothetical protein NGA_2026000, partial [Nannochloropsis gaditana CCMP526] >EKU21825.1 hypothetical protein NGA_2026000, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 196.8 bits (499), Expect = 3.600e-46 Identity = 109/183 (59.56%), Postives = 119/183 (65.03%), Query Frame = 0
Query: 548 AGQIERVFALLDLRDALAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPKPSTELYSLAFATAFEQERWDALPLLLKHMAGHGRRPDSSFFDELVRVLATSPTRRPSQTLATQIAALRRLPFXXXXXXXXXXXXXXXXXXXXXXXXXXXNTAIHACAAGGDWRLALDLLQELEGERLRPDYYS 731
AG IERVF+LLDLRD+L + R PS ELY+LAFAT FEQERWDALP+LLKHMAGHGRRP+S FFDELVRVLATSPTRRPSQTLA+QI+ALRRLP NTAIHACAAGGDWRLALDLL EL+GE+LRPDYYS
Sbjct: 1 AGDIERVFSLLDLRDSLLD-----------KDLADYGHGPDPGRRQERRTPSMELYTLAFATCFEQERWDALPILLKHMAGHGRRPESVFFDELVRVLATSPTRRPSQTLASQISALRRLPL-----SQAQEGGTGVSVPCSSTLLLVFNTAIHACAAGGDWRLALDLLHELKGEKLRPDYYS 167
BLAST of NO20G00670 vs. NCBI_GenBank
Match: XP_005854536.1 (hypothetical protein NGA_2056700, partial [Nannochloropsis gaditana CCMP526] >EKU21826.1 hypothetical protein NGA_2056700, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 104.0 bits (258), Expect = 3.100e-18 Identity = 61/156 (39.10%), Postives = 73/156 (46.79%), Query Frame = 0
Query: 208 WPVGDLTDVTQLRSVEGMIRESLGQLNATACLGALTACSRLHQPDKAAWIIQEMRRLGPRPDAGCYALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSG-GGAYATAIHAALAGKQHGKML 363
WPVGDL DVTQLR++E + E G L+AT C GALTACSRLHQPDKAAWII++MR GP PD CYA G GGAYATA+H+ LA +++G+ML
Sbjct: 112 WPVGDLEDVTQLRNLERTVEEITGPLDATMCRGALTACSRLHQPDKAAWIIEKMRERGPPPDETCYATAIDTCARKGRWSVAVSLLSTMRHTDGLAVENPTFAVVMAACHRAGQTERVLALLTEMEEAGTGGGNRGGAYATAVHSTLASREYGEML 267
BLAST of NO20G00670 vs. NCBI_GenBank
Match: EWM22183.1 (hypothetical protein Naga_100645g1 [Nannochloropsis gaditana]) HSP 1 Score: 90.1 bits (222), Expect = 4.700e-14 Identity = 106/143 (74.13%), Postives = 110/143 (76.92%), Query Frame = 0
Query: 956 MVIEICAHAGEWKTAGYLLIEMRREGQLPDATSYAV-------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGGNQNQRFFLEMMGSFVAGGRWRSALHLLRVLGGGE 1092
MVI+ICA AGEWKTAGYLLIEMRREGQLPDA SYA+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GG G NQ FF ++M FV GRWRSALHLLRVLG GE
Sbjct: 1 MVIKICAKAGEWKTAGYLLIEMRREGQLPDAASYAIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPWKGEGGREVGREGGAGVANQGFFQDLMAGFVENGRWRSALHLLRVLGQGE 143 The following BLAST results are available for this feature:
BLAST of NO20G00670 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 4
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO20G00670 ID=NO20G00670|Name=NO20G00670|organism=Nannochloropsis oceanica|type=gene|length=4404bpback to top protein sequence of NO20G00670.1 >NO20G00670.1-protein ID=NO20G00670.1-protein|Name=NO20G00670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1129bpback to top Synonyms
Publications
|