NO20G00580, NO20G00580 (gene) Nannochloropsis oceanica

Overview
NameNO20G00580
Unique NameNO20G00580
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1093
Alignment locationchr20:195358..196450 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:195358..196450 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO20G00580 vs. NCBI_GenBank
Match: EWM22176.1 (Uncharacterized protein family UPF0136, Transmembrane [Nannochloropsis gaditana])

HSP 1 Score: 127.9 bits (320), Expect = 3.200e-26
Identity = 64/116 (55.17%), Postives = 86/116 (74.14%), Query Frame = 0 
Query:    4 YYDPEAGRYVMLAYALLICINGIVAWIRVRCKVLLVSSMLSSACLFVAFGLSWVYPAIAFSIGAIIAANLGINFALRVQAVRKFFPPGLLLLISSGVFVFLCILAVRASPTKGLRG 120
            YYD EAGRYV+L YA+LI   G +AW++ R ++ ++S+++S  CLFVAFG+SW YP +AF+I AI+AAN+ IN ALR+QA R+ FP G+ L+IS G FVF CILA  A   +  RG
Sbjct:    5 YYDAEAGRYVLLGYAILITFAGTLAWVKARSRIEVMSAVVSFICLFVAFGISWTYPIVAFAIAAIVAANVAINDALRLQASRQIFPTGITLVISVGSFVFFCILAANAPTIQFSRG 120
The following BLAST results are available for this feature:
BLAST of NO20G00580 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22176.13.200e-2655.17Uncharacterized protein family UPF0136, Transmembr... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL024nonsL024Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR068ngnoR068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002582NSK002582Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G00580.1NO20G00580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594402gene_6272Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100153g9gene8264Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G00580.1NO20G00580.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G00580 ID=NO20G00580|Name=NO20G00580|organism=Nannochloropsis oceanica|type=gene|length=1093bp
ACAGGCGAACCGGGTACTGCCACCATTACGTAGAGGGCTGGCCGGCCTTA
TCGCCGCTCTCTTCCCCTTCTTCAAAAACCTCCCAACCCCGCGACACACC
TCGACACGACCCCATCCAGCCACATGGCCCCATACTATGACCCCGAGGCC
GGTCGCTATGTCATGCTTGCCTATGCACTGCTCATTTGCATCAATGGCAT
AGTTGgtatgtgtacctatctttgggatgcactcggctacggcttcccgc
tcctcccctccgtgtgtctgtacttgtctggaagggactgtgcttgccat
tcagggtggtattataatatcgcttccctattttatttatcttccacaaa
cagcttatgacacaattcttcctgacattgcctcccttatccatttcttt
ccccttctccactgcttctttcattccttccctcttctcttctcttttcc
tatcgtcctcgtactccagCATGGATCAGAGTCCGCTGCAAAGTTTTACT
CGTCTCGTCCATGCTCAGCTCTGCCTGTCTCTTTGTGGCTTTTGGTTTAT
CATGGGTTTATCCAGCTATAGCCTTCTCGATTGGTGCGATTATTGCAGCC
AACCTCGGGATCAACTTTGCCTTGCGCGTACAAGCGGTCAGGAAATTCTT
TCCGCCCGGTCTTCTTCTCTTGATATCGTCGGGAGTGTTCGTGTTTTTGT
GCATTCTGGCCGTTCGCGCGTCTCCGACTAAGGGGCTGCGAGGCACTAAA
GTAGTAGGAGGGAACACGCGGACAGTGACATCGTCAGGAGCACCAGGTGC
GGCAGGAGCAACAGCGAGTGGACGGCGAGGACTTTTGAAAAAGAGACCTC
TGATGGTGCCAATGCCAGTGCCTCGAGCTGGGGTATCGTGGCCACCGCCT
CCAGAACATGAGATTCCTTGACCCACTTAACCATACTCGTTTGATATTTT
GAATAAAGCTTGAAAAGCGGAAAGAGTATGACATGATGATAAAAAAGAAT
GATGACAGAGAAAATGTCCTGACCGTTGAATGATTCTGGACGGGCAAGAG
ATTGCCTCTTAAACTGTTCCTTTGATACGCGCAGAAATCACCA
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protein sequence of NO20G00580.1

>NO20G00580.1-protein ID=NO20G00580.1-protein|Name=NO20G00580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=178bp
MAPYYDPEAGRYVMLAYALLICINGIVAWIRVRCKVLLVSSMLSSACLFV
AFGLSWVYPAIAFSIGAIIAANLGINFALRVQAVRKFFPPGLLLLISSGV
FVFLCILAVRASPTKGLRGTKVVGGNTRTVTSSGAPGAAGATASGRRGLL
KKRPLMVPMPVPRAGVSWPPPPEHEIP*
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Synonyms
Publications