NO20G00550, NO20G00550 (gene) Nannochloropsis oceanica

Overview
NameNO20G00550
Unique NameNO20G00550
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length705
Alignment locationchr20:186177..186881 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:186177..186881 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO20G00550 vs. NCBI_GenBank
Match: EWM22173.1 (hypothetical protein Naga_100153g12 [Nannochloropsis gaditana])

HSP 1 Score: 152.9 bits (385), Expect = 1.200e-33
Identity = 84/131 (64.12%), Postives = 98/131 (74.81%), Query Frame = 0 
Query:  105 KKFMVASYSFPNKLAALTGGAGIEGGREEGRSPRYYPAFTSTRRGKTLRYLTKTVHLTRTYWKTAATAMLGTVGLVFLARLYGTPSTLTISVGGNEEREG-GGEVGGKGERKIEERRDGLVYTSPLEGLDD 235
            KKFMVASY+ PNKL +L+GGAG +  RE GR   YYPAF STRRGK LRYL  TVHLTRTYWKTAATAMLGT+GLVFLARLYG+P  LTI  GG+E  EG             +ERRDGL++++PLE L++
Sbjct:  499 KKFMVASYALPNKLTSLSGGAGPQAERERGRDSVYYPAFESTRRGKRLRYLVTTVHLTRTYWKTAATAMLGTMGLVFLARLYGSPVELTI--GGDERVEGRXXXXXXXXXXXXDERRDGLLFSTPLEVLEE 627
The following BLAST results are available for this feature:
BLAST of NO20G00550 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22173.11.200e-3364.12hypothetical protein Naga_100153g12 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL024nonsL024Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR068ngnoR068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G00550.1NO20G00550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G00550.1NO20G00550.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G00550 ID=NO20G00550|Name=NO20G00550|organism=Nannochloropsis oceanica|type=gene|length=705bp
ATGCGTTTGGACGCACGGCAGGCACGTGCTCGCGCAGCAGCAACAGCAGC
AATTGTACCCAGGGAGGCATTAGCAGGATCAACACAAGACGAGGACAGTA
CCTTCACAGATCTTTCGGCTTCTTCTTCCTCTTCTTCTTCTTCTTCTCCT
TCCTCCTCCTCCTCCTTCTCCTCCTCACCAATGCAGCTATCACCAACGCA
GCTATCATCAAGTCCTGCAAGTCATTACTCTTCCTCGTCGTCCTCATCCT
CGTCCTCCCACCTACCCCTCTCTTCCTCCTCTTCCTCCTTCCCCTCTTCA
CCTCCATCGGGCAAGAAATTCATGGTCGCCTCTTATTCCTTTCCCAACAA
GCTTGCCGCCCTAACAGGTGGTGCAGGTATCGAAGGAGGGCGGGAAGAAG
GGAGGAGTCCAAGGTACTACCCTGCCTTTACCAGCACTCGACGGGGCAAG
ACTTTGAGATACCTGACCAAAACCGTGCATTTGACGAGAACGTATTGGAA
AACGGCGGCCACGGCCATGCTAGGGACTGTTGGGCTTGTGTTTCTGGCGC
GCTTATACGGGACACCATCCACGTTGACGATATCGGTTGGGGGGAACGAA
GAGAGAGAGGGGGGGGGGGAGGTAGGAGGGAAGGGGGAGAGGAAGATAGA
GGAGCGGAGGGATGGTTTAGTGTATACTTCGCCTTTGGAAGGGTTGGACG
ACTAG
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protein sequence of NO20G00550.1

>NO20G00550.1-protein ID=NO20G00550.1-protein|Name=NO20G00550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=235bp
MRLDARQARARAAATAAIVPREALAGSTQDEDSTFTDLSASSSSSSSSSP
SSSSSFSSSPMQLSPTQLSSSPASHYSSSSSSSSSSHLPLSSSSSSFPSS
PPSGKKFMVASYSFPNKLAALTGGAGIEGGREEGRSPRYYPAFTSTRRGK
TLRYLTKTVHLTRTYWKTAATAMLGTVGLVFLARLYGTPSTLTISVGGNE
EREGGGEVGGKGERKIEERRDGLVYTSPLEGLDD*
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Synonyms
Publications