NO20G00540, NO20G00540 (gene) Nannochloropsis oceanica

Overview
NameNO20G00540
Unique NameNO20G00540
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1128
Alignment locationchr20:184951..186078 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:184951..186078 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO20G00540 vs. NCBI_GenBank
Match: EWM22173.1 (hypothetical protein Naga_100153g12 [Nannochloropsis gaditana])

HSP 1 Score: 357.5 bits (916), Expect = 5.200e-95
Identity = 191/293 (65.19%), Postives = 236/293 (80.55%), Query Frame = 0 
Query:   80 SSNLCLSAARTDAMGDSDPSXXXXXXXKRKKSTWDRFSSAINKVQDIAQSDDFQRLARGARKLLKEVDIDVPTMEQNLGSLRLSLDRSLSSTVLTFEHLLELYGGRSPEADILLNMARKHVTKVLHAKLNNLMSPTAIEWAVYAVNSTALLVEEEAARVLAEGLATAENMLEEPTFIEMQREVMKRMVVVAEDAEGIAWNVIQSRWFRAGWEEDELKQFDAMLNARLVPRLVLAVAAAVLHGWRPLEDPLLALLVVGYASGSLTKSVARNFIGLVEASLVVKEEGGGAWEPGK 373
            +S +C+SA  T A   S+         K +KSTW+R S   NKVQDIAQSDDFQRLARG R LLKE+DI+VPTMEQNLG+LR +LDRSL ST+L+FE LL+ Y  RSPEAD+LL++ARK VTK++   L+ LM+PTA+EWA+YAVNSTALLVEEEAARVLA    +AEN L+ P+F +MQREVM+RMVVVAED E +A NVIQ+RWFR G+ ++ELKQ +A+L+AR+VPRL+LAVAAAVLHGWRPL+DPLL LLVVG+ASGSL+KSVA N + L EASLVVK+   G+ + G+
Sbjct:   99 TSPVCVSATPTHA---SEHPSSQAPPPKPRKSTWERVSKVFNKVQDIAQSDDFQRLARGTRTLLKEIDIEVPTMEQNLGALRRTLDRSLGSTLLSFEKLLQHYESRSPEADVLLSVARKRVTKLVRHGLHQLMTPTAVEWAIYAVNSTALLVEEEAARVLAAQEGSAENSLDVPSFQDMQREVMRRMVVVAEDVEALAQNVIQNRWFRTGYSDEELKQLEALLHARVVPRLLLAVAAAVLHGWRPLQDPLLTLLVVGFASGSLSKSVAGNLMELFEASLVVKDGWEGSGKEGE 388
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BLAST of NO20G00540 vs. NCBI_GenBank
Match: XP_005853572.1 (hypothetical protein NGA_0481600, partial [Nannochloropsis gaditana CCMP526] >EKU22788.1 hypothetical protein NGA_0481600, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 247.7 bits (631), Expect = 5.800e-62
Identity = 127/182 (69.78%), Postives = 157/182 (86.26%), Query Frame = 0 
Query:  153 MEQNLGSLRLSLDRSLSSTVLTFEHLLELYGGRSPEADILLNMARKHVTKVLHAKLNNLMSPTAIEWAVYAVNSTALLVEEEAARVLAEGLATAENMLEEPTFIEMQREVMKRMVVVAEDAEGIAWNVIQSRWFRAGWEEDELKQFDAMLNARLVPRLVLAVAAAVLHGWRPLEDPLLALLV 335
            MEQNLG+LR +LDRSL ST+L+FE LL+ Y  RSPEAD+LL++ARK VTK++   L+ LM+PTA+EWA+YAVNSTALLVEEEAARVLA    +AEN L+ P+F +MQREVM+RMVVVAED E +A NVIQ+RWFR G+ ++ELKQ +A+L+AR+VPRL+LAVAAAVLHGWRPL+DPLL LLV
Sbjct:    1 MEQNLGALRRTLDRSLGSTLLSFEKLLQHYESRSPEADVLLSVARKRVTKLVRHGLHQLMTPTAVEWAIYAVNSTALLVEEEAARVLAAQEGSAENSLDVPSFQDMQREVMRRMVVVAEDVEALAQNVIQNRWFRTGYSDEELKQLEALLHARVVPRLLLAVAAAVLHGWRPLQDPLLTLLV 182
The following BLAST results are available for this feature:
BLAST of NO20G00540 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM22173.15.200e-9565.19hypothetical protein Naga_100153g12 [Nannochlorops... [more]
XP_005853572.15.800e-6269.78hypothetical protein NGA_0481600, partial [Nannoch... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL024nonsL024Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR068ngnoR068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002585NSK002585Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G00540.1NO20G00540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|671875gene_6269Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100153g12gene8267Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G00540.1NO20G00540.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G00540 ID=NO20G00540|Name=NO20G00540|organism=Nannochloropsis oceanica|type=gene|length=1128bp
ATGCATGTCACGATAGAAAACGGACAACTCTTGACCGCAACAAGAAAGAA
ATCACGAGTTCCTACCCCCTGTAGTGCCGCCGCGATCCTCCCTCTCCTCC
TTTTCCCATGGATTGTCCTTTTGGTGAACGCGCTTCCGCATAGGCAGAAT
CAGCAACCACACCCCTCCTTGGCCTTTGCAGGTGGTGCTCCTTACTGCCG
TAATCCTGATGAATCATCGCCCGTCTATGGTGGGAGCAGCAGTAATTTGT
GTCTAAGCGCCGCTCGGACTGACGCCATGGGTGACTCTGACCCCTCCTCC
CCTCCCTCTCCTCCAGCGAAACGCAAGAAATCAACGTGGGACCGATTCTC
CTCTGCCATTAACAAAGTTCAAGATATTGCCCAATCGGACGACTTTCAAC
GTCTCGCCCGCGGAGCCCGCAAGCTTCTCAAGGAGGTGGACATCGACGTG
CCGACCATGGAACAAAACCTTGGCTCCCTTCGGCTGTCCCTTGATCGTTC
CCTCTCCTCGACCGTTTTGACGTTCGAGCACCTCTTGGAGCTGTACGGAG
GCCGTTCACCCGAGGCCGACATCCTCTTAAATATGGCGAGAAAGCATGTG
ACAAAGGTACTACATGCCAAATTGAACAATCTCATGTCTCCCACAGCGAT
TGAGTGGGCTGTGTATGCGGTCAACTCGACAGCATTGTTAGTCGAAGAAG
AGGCCGCACGTGTCCTCGCTGAGGGGCTAGCGACCGCGGAGAACATGCTG
GAGGAACCGACCTTCATCGAGATGCAACGGGAGGTGATGAAGCGGATGGT
AGTGGTGGCCGAGGATGCTGAGGGGATTGCTTGGAATGTGATTCAGAGTC
GATGGTTCCGGGCAGGGTGGGAAGAGGATGAGTTAAAGCAGTTCGACGCA
ATGCTCAATGCCAGGCTGGTGCCACGCTTGGTCTTAGCGGTAGCAGCAGC
GGTGTTGCATGGATGGCGACCACTGGAGGATCCGCTGCTGGCGCTGCTGG
TGGTGGGGTACGCGTCGGGCAGTTTAACAAAAAGCGTTGCGAGGAATTTT
ATCGGTTTGGTAGAGGCCTCGCTGGTGGTTAAGGAGGAGGGGGGGGGGGC
GTGGGAGCCAGGAAAGGGGGCCACATGA
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protein sequence of NO20G00540.1

>NO20G00540.1-protein ID=NO20G00540.1-protein|Name=NO20G00540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=376bp
MHVTIENGQLLTATRKKSRVPTPCSAAAILPLLLFPWIVLLVNALPHRQN
QQPHPSLAFAGGAPYCRNPDESSPVYGGSSSNLCLSAARTDAMGDSDPSS
PPSPPAKRKKSTWDRFSSAINKVQDIAQSDDFQRLARGARKLLKEVDIDV
PTMEQNLGSLRLSLDRSLSSTVLTFEHLLELYGGRSPEADILLNMARKHV
TKVLHAKLNNLMSPTAIEWAVYAVNSTALLVEEEAARVLAEGLATAENML
EEPTFIEMQREVMKRMVVVAEDAEGIAWNVIQSRWFRAGWEEDELKQFDA
MLNARLVPRLVLAVAAAVLHGWRPLEDPLLALLVVGYASGSLTKSVARNF
IGLVEASLVVKEEGGGAWEPGKGAT*
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Synonyms
Publications