NO20G00470, NO20G00470 (gene) Nannochloropsis oceanica

Overview
NameNO20G00470
Unique NameNO20G00470
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1069
Alignment locationchr20:156081..157149 -

Link to JBrowse

Properties
Property NameValue
DescriptionMitochondrial import tom22-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:156081..157149 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO20G00470 vs. NCBI_GenBank
Match: XP_005854506.1 (mitochondrial import tom22-like protein [Nannochloropsis gaditana CCMP526] >EKU21850.1 mitochondrial import tom22-like protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 180.6 bits (457), Expect = 2.800e-42
Identity = 87/121 (71.90%), Postives = 104/121 (85.95%), Query Frame = 0 
Query:    1 MPSRKSVRFEDLDDGIEDGVYGLKGMFNKLYAQATSYGKWARSHSKTALSWGLTLGWYFAITTILTAMPLMLELQREQAVLEMEKVQVKELLAQGYPPQELQRMGMTLEPSVLQGGNEKQR 122
            MPS KSVRFEDLDDG++DG+YG+KG+   LY QA SY KW RSHSK  LSWG++L WYF++ ++LT +PL LELQREQ+V+EMEK+QVKELLAQGYPPQELQRMGMTLEP+VL   NE+QR
Sbjct:    1 MPSSKSVRFEDLDDGVDDGLYGMKGILKNLYTQAGSYRKWVRSHSKKILSWGISLAWYFSMASMLTVIPLSLELQREQSVVEMEKIQVKELLAQGYPPQELQRMGMTLEPAVL---NERQR 118
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BLAST of NO20G00470 vs. NCBI_GenBank
Match: EWM22158.1 (hypothetical protein Naga_100064g30 [Nannochloropsis gaditana])

HSP 1 Score: 170.2 bits (430), Expect = 3.800e-39
Identity = 89/145 (61.38%), Postives = 105/145 (72.41%), Query Frame = 0 
Query:    1 MPSRKSVRFEDLDDGIEDGVYGLK------------------------GMFNKLYAQATSYGKWARSHSKTALSWGLTLGWYFAITTILTAMPLMLELQREQAVLEMEKVQVKELLAQGYPPQELQRMGMTLEPSVLQGGNEKQR 122
            MPS KSVRFEDLDDG++DG+YG+K                        G+  KLY QA SY KW RSHSK  LSWG++L WYF++ +ILT +PL LELQREQ+V+EMEK+QVKELLAQGYPPQELQRMGMTLEP+VL   NE+QR
Sbjct:    1 MPSSKSVRFEDLDDGVDDGLYGMKVCLLSSIRFPATPCYHQLLHTGQQGILKKLYTQAGSYRKWVRSHSKKILSWGISLAWYFSMASILTVIPLSLELQREQSVVEMEKIQVKELLAQGYPPQELQRMGMTLEPAVL---NERQR 142
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BLAST of NO20G00470 vs. NCBI_GenBank
Match: XP_005853819.1 (hypothetical protein NGA_0443500 [Nannochloropsis gaditana CCMP526] >EKU22545.1 hypothetical protein NGA_0443500 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 77.4 bits (189), Expect = 3.400e-11
Identity = 33/46 (71.74%), Postives = 38/46 (82.61%), Query Frame = 0 
Query:    1 MPSRKSVRFEDLDDGIEDGVYGLKGMFNKLYAQATSYGKWARSHSK 47
            MPS KSVRFEDLDDG++DG+YG+KG+   LY QA SY KW RSHSK
Sbjct:    1 MPSSKSVRFEDLDDGVDDGLYGMKGILKNLYTQAGSYRKWVRSHSK 46
The following BLAST results are available for this feature:
BLAST of NO20G00470 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
XP_005854506.12.800e-4271.90mitochondrial import tom22-like protein [Nannochlo... [more]
EWM22158.13.800e-3961.38hypothetical protein Naga_100064g30 [Nannochlorops... [more]
XP_005853819.13.400e-1171.74hypothetical protein NGA_0443500 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL024nonsL024Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR068ngnoR068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002593NSK002593Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G00470.1NO20G00470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594357gene_6261Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100064g30gene8276Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G00470.1NO20G00470.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G00470 ID=NO20G00470|Name=NO20G00470|organism=Nannochloropsis oceanica|type=gene|length=1069bp
AAACCAACAGCGAGCAAGCCACGCCACGTCCCTCCTTCATCATCACACCA
TGCCTTCCCGCAAAAGCGTGCGATTCGAGGACTTGGACGACGGCATCGAG
GACGGCGTCTACGGCCTAAAGgtacgtacgggtaaagaaaaatcttctgc
atgcatgctcgtcgttttcctatggcgcgtagtgcgagcccgggattttg
tatgtcttgatgcctctctgcgcccctcctcctatcctgccactgtgtca
ctcacaccgccccaccgccacctcttccaatcccatcaaatggtacagGG
CATGTTCAACAAGCTCTATGCCCAAGCGACTAGCTACGGCAAGTGGGCCC
GCAGCCACAGCAAGACGgtgcgtgaatgtctgtatggggtagatcgcaac
atgtccttcccactcctcgaagctcatcccgccctcctctctccatccct
ccccccctccagGCCTTATCCTGGGGTTTGACCCTCGGCTGGTATTTCGC
CATAACAACCATTTTGACTGCCATGCCCCTGATGTTGGAGCTACAAAGAG
AGCAAGCAGTGTTGGAGATGGAGAAGGTCCAAGTGAAGGAATTGTTGGCC
CAGGGATACCCGCCTCAAGAGCTTCAACGGATGGGGATGACCTTAGAGCC
GTCCGTGCTGCAGGGAGGGAATGAGAAACAGCGTTAAGTGAGCGAGGAGT
TTGGATGCTTGGAAAGGTGGGAGGCAGGGGAGGAAAGAAGAGGAGAATGG
GCGGTGTATGATATAAGTCGCAGGTAAAGGAGAAGGAGAGTCCATGAGAG
GGAAAAGGAGGCGGAAGAAGGAGAATGGTCGACAGATAGAGGGAGAAAGA
GAAACGGAAGGAAGGAGAGTGGAAGAGCGAGGTAGGGCTTGGTTGGTGTA
CAAAATGATGGGTGAGGTGAGAAGACATGAGGACTAAGACGGACGAGAGT
TGAGCGAGAGAAGGAGAGAAATATCGAGAGAGATAGCGAAAGAGAAATGG
CGAGGGACGATGGGGAGGCACACACACAGACAAAACGTGCCAAGTCAAGG
ATTTTTTTAAAAAAAGACA
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protein sequence of NO20G00470.1

>NO20G00470.1-protein ID=NO20G00470.1-protein|Name=NO20G00470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=122bp
MPSRKSVRFEDLDDGIEDGVYGLKGMFNKLYAQATSYGKWARSHSKTALS
WGLTLGWYFAITTILTAMPLMLELQREQAVLEMEKVQVKELLAQGYPPQE
LQRMGMTLEPSVLQGGNEKQR*
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Synonyms
Publications