NO20G00460, NO20G00460 (gene) Nannochloropsis oceanica

Overview
NameNO20G00460
Unique NameNO20G00460
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1318
Alignment locationchr20:154745..156062 +

Link to JBrowse

Properties
Property NameValue
DescriptionUPF0598 protein C8orf82 homolog
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:154745..156062 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR028108DUF4505
Homology
BLAST of NO20G00460 vs. NCBI_GenBank
Match: EWM22160.1 (hypothetical protein Naga_100064g29 [Nannochloropsis gaditana])

HSP 1 Score: 212.6 bits (540), Expect = 1.500e-51
Identity = 106/164 (64.63%), Postives = 124/164 (75.61%), Query Frame = 0
Query:   13 TRRPTHSCLSFFSSGS-----SEDAYLESWQQKQIQPPSFYEQEALKRHYFYTVDLQGRLYLEESRVKNLTSCLKDDKFLNFFFRQIRRNDTGLHTSYPFISPCGKEMNFILPADMPVVFHDFVQGPTEGGEDGGKEGETALVYAGNLQQEFDPSSVYISSRSG 172
            T R +  C SF +S S     SEDAYL+ W +KQI+  +FYE+E L+R YFYTVDLQGRLYLEES VKN+TSCLKDDKFLNFFFRQIRRNDTGLH SYPF+SPCGKEMN++LPADMPVVFHD +     G E  G  G+  LV+ G LQQ FDPS V++   +G
Sbjct:   30 THRISCPCTSFSTSSSSPAPGSEDAYLDEWMRKQIKSFAFYEEEGLQRRYFYTVDLQGRLYLEESPVKNMTSCLKDDKFLNFFFRQIRRNDTGLHPSYPFVSPCGKEMNYLLPADMPVVFHDLLPA-LSGNEKSGDRGD-CLVFGGGLQQRFDPSRVHLRRGAG 191          
BLAST of NO20G00460 vs. NCBI_GenBank
Match: XP_005853816.1 (hypothetical protein NGA_0443110, partial [Nannochloropsis gaditana CCMP526] >EKU22542.1 hypothetical protein NGA_0443110, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 208.0 bits (528), Expect = 3.800e-50
Identity = 104/155 (67.10%), Postives = 119/155 (76.77%), Query Frame = 0
Query:   13 TRRPTHSCLSFFSSGS-----SEDAYLESWQQKQIQPPSFYEQEALKRHYFYTVDLQGRLYLEESRVKNLTSCLKDDKFLNFFFRQIRRNDTGLHTSYPFISPCGKEMNFILPADMPVVFHDFVQGPTEGGEDGGKEGETALVYAGNLQQEFDPS 163
            T R +  C SF +S S     SEDAYL+ W +KQI+  +FYE+E L+R YFYTVDLQGRLYLEES VKN+TSCLKDDKFLNFFFRQIRRNDTGLH SYPF+SPCGKEMN++LPADMPVVFHD +     G E  G  G+  LV+ G LQQ FDPS
Sbjct:    6 TPRLSCPCTSFSTSSSSPAPGSEDAYLDEWMRKQIKSFAFYEEEGLQRRYFYTVDLQGRLYLEESPVKNMTSCLKDDKFLNFFFRQIRRNDTGLHPSYPFVSPCGKEMNYLLPADMPVVFHDLLPA-LSGNEKSGDRGD-CLVFGGGLQQRFDPS 158          
BLAST of NO20G00460 vs. NCBI_GenBank
Match: GBG29258.1 (UPF0598 protein C8orf82-like [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 144.1 bits (362), Expect = 6.700e-31
Identity = 81/207 (39.13%), Postives = 114/207 (55.07%), Query Frame = 0
Query:   26 SGSSEDAYLESWQQKQIQPPSFYEQEALKRHYFYTVDLQGRLYLEESRVKNLTSCLKDDKFLNFFFRQIRRNDTGLHTSYPFISPCGKEMNFILPADMPVVFHDFVQGPTEGGEDGGKEGETALVYAGNLQQEFDPSSVYISSRSGRLYHPLNTTKKXXXXXXXXXGLEGKEGERDGGRGGGRPRFGLVRSHVGLLLSDRLVHTEED 233
            +  +E  Y E  Q+ QI+ P FY++ A +R YFY VDL GRLYLE+   KN+ + LK  KFLNFFF ++R N+ G    YPF+SPCGKEMN+I PAD P+VF           E   K+G+  L YA ++++ FDPS +  ++ + RLY+P+   K+              +G R            LVRSH+ + LS   V   +D
Sbjct:   15 NADAEPRYAEELQKAQIKEPEFYDRLAEERKYFYHVDLLGRLYLEDMLPKNIATSLKSPKFLNFFFTRLRPNELGEFEEYPFVSPCGKEMNYIRPADTPIVFDKL--------EKDEKDGKEYLYYAADMKEPFDPSLLEWAADTDRLYYPVRNHKR-------------MKGHR-----------ALVRSHLAVQLSQNFVLDGDD 189          
BLAST of NO20G00460 vs. NCBI_GenBank
Match: GAX17431.1 (hypothetical protein FisN_5Hu079 [Fistulifera solaris])

HSP 1 Score: 133.7 bits (335), Expect = 9.000e-28
Identity = 82/235 (34.89%), Postives = 124/235 (52.77%), Query Frame = 0
Query:   26 SGSSEDAYLESWQQKQIQPPSFYEQEALK---RHYFYTVDLQGRLYLEESRVKNLTSCLKDDKFLNFFFRQI-----------RRNDTGLHTSYPFISPCGKEMNFILPADMPVVFHDFVQGPTEGGEDGGKEGETALVYAGNLQQEFDPSSVYISSRSGRLYHPLNTTKKXXXXXXXXXGLEGKEGERDGGRGGGRPRFGLVRSHVGLLLSDRLVHTEE------DEGGLVLMW 241
            S S++ AY++ W    I+ PSFY+  A     R YFY +DL GRL+LEE+  KN+ + +KD++FL+ FF +I           ++ +  +H  YPF+SPCG+E+NFI PA  P+VFH                 +  L++AGN +Q FDP+++ IS R+GRLYH +               L G    +D       P + LVRS V + LSDR++  ++      D+  L + W
Sbjct:   38 SFSTQTAYIDEWFASIIKRPSFYQVLANSEPVRCYFYNIDLYGRLFLEETMPKNIATSIKDERFLDLFFGRIQKPTEKHQELMKQKEIPIH-DYPFVSPCGRELNFIRPAATPLVFHSI--------------EKEHLIFAGNKRQLFDPANLAISERTGRLYHQVTN-----------MSLRGDTTSKDA------PEYALVRSAVAVSLSDRIILHDDCLSFQLDDKALPIEW 240          
BLAST of NO20G00460 vs. NCBI_GenBank
Match: XP_008896954.1 (hypothetical protein PPTG_05200 [Phytophthora parasitica INRA-310] >ETI34432.1 hypothetical protein F443_19086 [Phytophthora parasitica P1569] >ETK74781.1 hypothetical protein L915_18511 [Phytophthora parasitica] >ETL28208.1 hypothetical protein L916_18411 [Phytophthora parasitica] >ETL81466.1 hypothetical protein L917_18240 [Phytophthora parasitica] >ETM34661.1 hypothetical protein L914_18324 [Phytophthora parasitica] >ETN17387.1 hypothetical protein PPTG_05200 [Phytophthora parasitica INRA-310] >ETO63223.1 hypothetical protein F444_19039 [Phytophthora parasitica P1976] >ETP04331.1 hypothetical protein F441_18895 [Phytophthora parasitica CJ01A1] >ETP32467.1 hypothetical protein F442_18867 [Phytophthora parasitica P10297] >KUF94621.1 hypothetical protein AM587_10012225 [Phytophthora nicotianae])

HSP 1 Score: 132.1 bits (331), Expect = 2.600e-27
Identity = 80/185 (43.24%), Postives = 103/185 (55.68%), Query Frame = 0
Query:    4 ALGLVLRSPTRRPTHSCLSFFSSGSSEDAYLESWQQKQIQPPSFYEQEALKRHYFYTVDLQGRLYLEESRVKNLTSCLKDDKFLNFFFRQIRRNDTGLHTS--------YPFISPCGKEMNFILPADMPVVFHDFVQGPTEGGEDGGKEGETALVY-AGNLQQEFDPSSVYISSRSGRLYHPLNT 180
            AL L LR   RR  +    F +  + ED YLE  Q K I+   FY+++A KR YFY +DLQGRL+LE++R KN+ + LK  KFL FFF Q+R N      S        YPF SPCGKEMNFI  AD P V+ D  +          + G+  LV+  G L   F P ++ IS  +GRLYH + T
Sbjct:    2 ALSLYLRRHWRRVPNGLRGFCT--ADEDKYLELKQLKDIKSEEFYDRQAHKRRYFYYIDLQGRLFLEDTRPKNIATSLKSAKFLRFFFSQVRPNGLAQCKSKEEEDFLEYPFRSPCGKEMNFIKCADRPFVYEDLRRDE--------RSGKWTLVFGGGELTMPFLPETLRISLSTGRLYHDVQT 176          
BLAST of NO20G00460 vs. NCBI_GenBank
Match: XP_002185243.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC43375.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 131.3 bits (329), Expect = 4.500e-27
Identity = 101/293 (34.47%), Postives = 139/293 (47.44%), Query Frame = 0
Query:    9 LRSPTRRPTHSCLSFFSSGSSEDA--YLESWQQKQIQPPSFYEQEAL-----KRHYFYTVDLQGRLYLEESRVKNLTSCLKDDKFLNFFFRQIRR----NDTGLH------TSYPFISPCGKEMNFILPADMPVVFHDFVQGPTEGGEDGGKEGETALVYAGNLQQEFDPSSVYISSRSGRLYHPLNTTKKXXXXXXXXXGLEGKEGERDGGRGGGRPRFGLVRSHVGLLLSDRLVHTEEDE----------GGLVLMWGRVGGKEDRNDGEEEGFIVRMLPEEDEP-VWGMP 274
            L  P R  T    +FF+S     A  Y++ W  + I+P SFY++ +       R YFY+VDLQGRL+LEE+  KN+ + +KD KFL+FFFR++RR      T LH        YPF+S CG E NFI PA  P+VFH  +   +E            L +AGNL + F+  ++ IS +SGRLYH L T             LE                + L+RS V + LS+ +   EE+E           GL +  G+ G +            +  LP E EP  W MP
Sbjct:   61 LLHPLRAQTR---AFFASVPCRSATHYIDEWFAETIKPKSFYQKHSKATSSNNRCYFYSVDLQGRLFLEETLPKNIATSIKDTKFLDFFFRRVRRISPEQATFLHERNISWKEYPFVSVCGVEKNFIRPAATPIVFHSLISDDSE------------LSFAGNLVEPFNVENLAISPKSGRLYHRL-TKPVPKSKTSQVLCLE----------------YALIRSAVAVQLSEIMEPLEEEEHISDSDSKSYSGLQIQLGKGGYQR-----------IPWLPVEYEPGDWAMP 310          
BLAST of NO20G00460 vs. NCBI_GenBank
Match: ORX97189.1 (hypothetical protein K493DRAFT_314163 [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 126.3 bits (316), Expect = 1.400e-25
Identity = 57/122 (46.72%), Postives = 83/122 (68.03%), Query Frame = 0
Query:   55 RHYFYTVDLQGRLYLEESRVKNLTSCLKDDKFLNFFFRQIRRNDTGLHTSYPFISPCGKEMNFILPADMPVVFHDFVQGPTEGGEDGGKEGETALVYAGNLQQEFDPSSVYISSRSGRLYHP 177
            R YFY +D+ G+L+LE+++ KN T+C KD +FL+FFF+++R NDTG +  YP++SPCGKE+N+IL  D P+VF D              +GE  LV+AG+ +  F P  + +SS SGR+YHP
Sbjct:   33 REYFYHIDVHGQLFLEDTKPKNFTTCFKDKRFLDFFFQRLRVNDTGRNEQYPYVSPCGKELNYILSEDAPIVFSDL-------------DGE-QLVWAGDKRFLFHPEKILVSSTSGRIYHP 140          
BLAST of NO20G00460 vs. NCBI_GenBank
Match: XP_009822478.1 (hypothetical protein H257_01122, partial [Aphanomyces astaci] >ETV87615.1 hypothetical protein H257_01122, partial [Aphanomyces astaci])

HSP 1 Score: 125.2 bits (313), Expect = 3.200e-25
Identity = 79/213 (37.09%), Postives = 106/213 (49.77%), Query Frame = 0
Query:   33 YLESWQQKQIQPPSFYEQEALKRHYFYTVDLQGRLYLEESRVKNLTSCLKDDKFLNFFFRQIR-----RNDTGLHTSYPFISPCGKEMNFILPADMPVVFHDFVQGPTEGGEDGGKEGETALVYAGNLQQEFDPSSVYISSRSGRLYHPLNTTKKXXXXXXXXXGLEGKEGERDGGRGGGRPRFGLVRSHVGLLLSDRLVHTEEDEGGLVLMW 241
            Y E  Q K+I+ P FY+  A  R+YFY VDLQG+L+LE++  KN+ + LK  KFL FFF Q+R      N   L   YP+ISPCG EMN+I  AD PVVF +  Q   +       +G   LV     + EF PS+V +S  + RLYH + T                               FGL++SHV + +S  +     D+G  VL W
Sbjct:   24 YAEQLQLKEIKSPEFYDLHAHDRNYFYHVDLQGQLFLEDTVPKNIATSLKSRKFLRFFFGQLRPNPHHANTQSLFHDYPYISPCGSEMNYIKAADTPVVFTELKQPDCD-------DGTWTLVTNAGHEVEFHPSNVAMSPATNRLYHWIQTKHLSL--------------------------FGLLKSHVAVEVSQFI--DFHDDGHHVLTW 201          
BLAST of NO20G00460 vs. NCBI_GenBank
Match: XP_009517795.1 (hypothetical protein PHYSODRAFT_466776 [Phytophthora sojae] >EGZ30520.1 hypothetical protein PHYSODRAFT_466776 [Phytophthora sojae])

HSP 1 Score: 124.8 bits (312), Expect = 4.200e-25
Identity = 74/160 (46.25%), Postives = 89/160 (55.62%), Query Frame = 0
Query:   28 SSEDAYLESWQQKQIQPPSFYEQEALKRHYFYTVDLQGRLYLEESRVKNLTSCLKDDKFLNFFFRQIRRNDTGLHTS--------YPFISPCGKEMNFILPADMPVVFHDFVQGPTEGGEDGGKEGETALVYAGNLQQEFDPSSVYISSRSGRLYHPLNT 180
            + ED YLE  Q K I+   FYE +  KR YFY VDLQGRL+LE++R KN+ + LK  KFL FFF Q + N      S        YPF SPCGKEMNFI  AD P VF D  +      +D  K   T +   G L   F P S+ IS  +GRLYH + T
Sbjct:   26 ADEDKYLELKQLKDIKSDEFYELQGQKRRYFYYVDLQGRLFLEDTRPKNIATSLKSAKFLRFFFSQAQPNTVAKCRSEEEHEFLEYPFRSPCGKEMNFIKCADRPFVFEDLRR------DDSDK--WTLMFGGGELTMPFVPESLRISLSTGRLYHDVKT 177          
BLAST of NO20G00460 vs. NCBI_GenBank
Match: OWZ14032.1 (putative mitochondrial protein [Phytophthora megakarya])

HSP 1 Score: 124.0 bits (310), Expect = 7.200e-25
Identity = 73/161 (45.34%), Postives = 91/161 (56.52%), Query Frame = 0
Query:   28 SSEDAYLESWQQKQIQPPSFYEQEALKRHYFYTVDLQGRLYLEESRVKNLTSCLKDDKFLNFFFRQIRRN--------DTGLHTSYPFISPCGKEMNFILPADMPVVFHDFVQGPTEGGEDGGKEGETALVY-AGNLQQEFDPSSVYISSRSGRLYHPLNT 180
            + ED YLE  Q K I+   FY+ +A KR YFY VDLQGRL+LE++R KN+ + LK  KFL FFF Q+R N        +      YP  SPCGKEMNFI  AD P VF D  +          K  + ALV+  G L   F P ++ IS  +GRLYH + T
Sbjct:   27 ADEDKYLELKQLKDIKSEGFYDLQAHKRRYFYYVDLQGRLFLEDTRPKNIATSLKSAKFLRFFFSQVRPNGIAQCKAKEEEEFLEYPHRSPCGKEMNFIKCADRPFVFEDLRR---------DKNDKWALVFGGGELTMPFLPETLRISLSTGRLYHDVQT 178          
The following BLAST results are available for this feature:
BLAST of NO20G00460 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22160.11.500e-5164.63hypothetical protein Naga_100064g29 [Nannochlorops... [more]
XP_005853816.13.800e-5067.10hypothetical protein NGA_0443110, partial [Nannoch... [more]
GBG29258.16.700e-3139.13UPF0598 protein C8orf82-like [Aurantiochytrium sp.... [more]
GAX17431.19.000e-2834.89hypothetical protein FisN_5Hu079 [Fistulifera sola... [more]
XP_008896954.12.600e-2743.24hypothetical protein PPTG_05200 [Phytophthora para... [more]
XP_002185243.14.500e-2734.47predicted protein [Phaeodactylum tricornutum CCAP ... [more]
ORX97189.11.400e-2546.72hypothetical protein K493DRAFT_314163 [Basidiobolu... [more]
XP_009822478.13.200e-2537.09hypothetical protein H257_01122, partial [Aphanomy... [more]
XP_009517795.14.200e-2546.25hypothetical protein PHYSODRAFT_466776 [Phytophtho... [more]
OWZ14032.17.200e-2545.34putative mitochondrial protein [Phytophthora megak... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL024nonsL024Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR068ngnoR068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002594NSK002594Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G00460.1NO20G00460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|557126gene_6260Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100064g29gene8277Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G00460.1NO20G00460.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G00460 ID=NO20G00460|Name=NO20G00460|organism=Nannochloropsis oceanica|type=gene|length=1318bp
ACAGGAGGATAAAATGCTCCGTGCCTTGGGCCTTGTCCTGCGGTCGCCGA
CACGGAGgtacgtacttgtttcgccgccacgtgccttcccttctccattc
cctctttgtatgacaaaagcgcatcaagaccagcggcagtagcagcggta
aaaattggaaatgaagtcgtatatcttcttggtaacccaccttaccgctc
tccacacttatgtaaagtcttcccctcgctagccagctcctacgcccttg
cccgtccgccctccctccctcacaccattcttcctactcaactccacgtt
cctaccagACCGACACATTCTTGCCTCTCTTTCTTCTCTTCTGGATCGTC
CGAAGACGCCTACTTGGAATCCTGGCAACAAAAGCAGATCCAACCTCCGT
CATTCTACGAGCAAGAGGCTCTAAAGCGGCACTATTTCTATACAGTAGAC
CTGCAGGGACGCTTGTACCTGGAGGAAAGCCGGGTGAAAAATCTCACATC
TTGCTTGAAGGATGACAAGgtaggtggtaagggaattagcgaagtttatt
tctgctggaaatcgacccattacatattgttctcgtcattgaccctccct
cccttccctctcttttcccgcagTTCCTCAATTTTTTTTTCCGCCAGATA
CGCCGCAATGATACGGGCCTCCATACTTCCTACCCCTTCATCTCTCCCTG
TGGAAAAGAAATGAACTTTATTCTCCCTGCTGACATGCCTGTCGTCTTCC
ATGACTTCGTTCAGGGGCCGACGGAGGGAGGAGAGGATGGAGGGAAGGAG
GGAGAGACGGCATTGGTGTATGCGGGGAATCTGCAGCAAGAGTTTGATCC
CTCTTCTGTTTATATCTCCTCGAGGTCGGGAAGGTTGTATCATCCTCTGA
ACACCACCAAAAAAAGAAGATTGGCAGCAGCAGCAGCAGCTGGACTAGAG
GGAAAGGAAGGAGAGAGGGATGGAGGGAGGGGGGGAGGACGGCCTCGGTT
TGGTTTGGTCAGATCGCATGTAGGGCTGCTGTTGTCTGATCGACTGGTTC
ATACAGAAGAGGATGAAGGTGGTTTAGTATTGATGTGGGGACGGGTGGGA
GGGAAGGAGGACAGGAATGATGGAGAGGAGGAAGGTTTTATAGTCCGTAT
GTTGCCCGAGGAGGACGAGCCGGTTTGGGGGATGCCTCCTTATTGATTGT
TATAAATTGACATGTGTGAGATATATGCACAGAGAGGAACAAGAAGAATT
TTGGTGGGTGATGGCAAGGTTGCTGTTTTGAACTCGACTCGTACGACCCG
GCAATCAACGGAAATCCG
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protein sequence of NO20G00460.1

>NO20G00460.1-protein ID=NO20G00460.1-protein|Name=NO20G00460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=276bp
MLRALGLVLRSPTRRPTHSCLSFFSSGSSEDAYLESWQQKQIQPPSFYEQ
EALKRHYFYTVDLQGRLYLEESRVKNLTSCLKDDKFLNFFFRQIRRNDTG
LHTSYPFISPCGKEMNFILPADMPVVFHDFVQGPTEGGEDGGKEGETALV
YAGNLQQEFDPSSVYISSRSGRLYHPLNTTKKRRLAAAAAAGLEGKEGER
DGGRGGGRPRFGLVRSHVGLLLSDRLVHTEEDEGGLVLMWGRVGGKEDRN
DGEEEGFIVRMLPEEDEPVWGMPPY*
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Synonyms
Publications