NO20G00440, NO20G00440 (gene) Nannochloropsis oceanica

Overview
NameNO20G00440
Unique NameNO20G00440
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2655
Alignment locationchr20:149764..152418 -

Link to JBrowse

Properties
Property NameValue
DescriptionPyruvate dehydrogenase
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:149764..152418 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036784AK/P_DHK_N_sf
IPR036890HATPase_C_sf
IPR005467Sig_transdc_His_kinase_core
IPR018955BCDHK/PDK_N
IPR003594HATPase_C
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
Homology
BLAST of NO20G00440 vs. NCBI_GenBank
Match: EWM22159.1 (pyruvate dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 700.3 bits (1806), Expect = 4.600e-198
Identity = 353/441 (80.05%), Postives = 374/441 (84.81%), Query Frame = 0
Query:   90 TRQQRRGIVSFSPELGRRLGIDARRQAKPSRPSQLIVVAQCFTPLQGVIIQQLHRELRTRIGHQILRLQHVLPASKGVDNLLVLHIDVYEQLWALDKAIADLGTKDMKPMVIESFNTLMLGIEGRMAMVVETLMEGLKESYKMQEEGAPPPPGTDAVTPIVTSQVDRFLQARIGIATLIRHYLDIIKDPGAQNFVPPSTTLNSNGXXXXXXXXXXXXXXXXXDVPLTLPSPSVSSWHNSSYVVNKKWGSVVENCRIKELIEDCRAEVEALCEHYYQERIPPLVIDEPPGAVATLIPAHFHHTLFEILKNAFKATVESAVRRNLNSMPAIKVRIFPGKEEVCIRVRDYGDGMSLLTMAKATEYLFTSAAD-YEVEQQRQQQSYQPTTEPMQGMGIGLPVSRLYARHWGGDIRVISVQGWGTDVAIYLSRKDLPEHIPIRVFD 530
            TRQQ R IV FS ELGRRLGIDARRQAKPSRPSQLIV AQCF PLQGV+IQQLHRELRTRIGHQILRLQHVLPASKGVDNLL LHIDVYE+LWALD AIA LG+KDMKP+VIESFN LM  IEGRMAMVVETLM+GLKESYK Q EGAPPPPGTD +TPIVTSQVDRFLQARIGIATLIRHYLDIIK PG Q FVP +  LN                         +PSPS S+WH S YVVNK+WGSVVENCRIKELI+DCRAEVEALCEHYYQERIPP+VIDEPPGAVATLIPAHFHHTLFEILKNAFKATVESAVRRNLN+MPA+KVRIFPGKEEVC+R+RD+GDGMSL TM+ ATEYLFTSAA+ YE              EPMQGMGIGLPVSRLYARHWGGDIR+ISVQGWGTDVAIYLSRKDLPE IP+RVFD
Sbjct:   62 TRQQSRHIVVFSAELGRRLGIDARRQAKPSRPSQLIVTAQCFLPLQGVVIQQLHRELRTRIGHQILRLQHVLPASKGVDNLLALHIDVYERLWALDDAIACLGSKDMKPVVIESFNHLMSEIEGRMAMVVETLMDGLKESYKRQAEGAPPPPGTDPITPIVTSQVDRFLQARIGIATLIRHYLDIIKSPGEQTFVPTTPVLNGGKDGGAEAGDEEEAMAG------MIPSPSSSAWHESPYVVNKRWGSVVENCRIKELIDDCRAEVEALCEHYYQERIPPVVIDEPPGAVATLIPAHFHHTLFEILKNAFKATVESAVRRNLNNMPAVKVRIFPGKEEVCVRIRDFGDGMSLRTMSNATEYLFTSAAETYEXXXXXXXXXXXXAMEPMQGMGIGLPVSRLYARHWGGDIRLISVQGWGTDVAIYLSRKDLPEAIPVRVFD 496          
BLAST of NO20G00440 vs. NCBI_GenBank
Match: XP_005854505.1 (pyruvate dehydrogenase [Nannochloropsis gaditana CCMP526] >EKU21849.1 pyruvate dehydrogenase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 686.8 bits (1771), Expect = 5.300e-194
Identity = 363/441 (82.31%), Postives = 387/441 (87.76%), Query Frame = 0
Query:   90 TRQQRRGIVSFSPELGRRLGIDARRQAKPSRPSQLIVVAQCFTPLQGVIIQQLHRELRTRIGHQILRLQHVLPASKGVDNLLVLHIDVYEQLWALDKAIADLGTKDMKPMVIESFNTLMLGIEGRMAMVVETLMEGLKESYKMQEEGAPPPPGTDAVTPIVTSQVDRFLQARIGIATLIRHYLDIIKDPGAQNFVPPSTTLNSNGXXXXXXXXXXXXXXXXXDVPLTLPSPSVSSWHNSSYVVNKKWGSVVENCRIKELIEDCRAEVEALCEHYYQERIPPLVIDEPPGAVATLIPAHFHHTLFEILKNAFKATVESAVRRNLNSMPAIKVRIFPGKEEVCIRVRDYGDGMSLLTMAKATEYLFTSAAD-YEVEQQRQQQSYQPTTEPMQGMGIGLPVSRLYARHWGGDIRVISVQGWGTDVAIYLSRKDLPEHIPIRVFD 530
            TRQQ R IV FS ELGRRLGIDARRQAKPSRPSQLIV AQCF PLQGV+IQQLHRELRTRIGHQILRLQHVLPASKGVDNLL LHIDVYE+LWALD AIA LG+KDMKP+VIESFN LM  IEGRMAMVVETLM+GLKESYK Q EGAPPPPGTD +TPIVTSQVDRFLQARIGIATLIRHYLDIIK PG Q FVP +  L    XXXXXXXXXXXXXXX   +   +PSPS S+WH S YVVNK+WGSVVENCRIKELI+DC+AEVEALCEHYYQERIPP+VIDEPPGAVATLIPAHFHHTLFEILKNAFKATVESAVRRNLN+MPA+KVRIFPGKEEVC+R+RD+GDGMSL TM+ ATEYLFTSAA+ YE              EPMQGMGIGLPVSRLYAR  GG+IR+ISVQGWGTDVAIYLSRKDLPE IP+RVFD
Sbjct:   62 TRQQSRHIVVFSAELGRRLGIDARRQAKPSRPSQLIVTAQCFLPLQGVVIQQLHRELRTRIGHQILRLQHVLPASKGVDNLLALHIDVYERLWALDDAIACLGSKDMKPVVIESFNHLMSEIEGRMAMVVETLMDGLKESYKRQAEGAPPPPGTDPITPIVTSQVDRFLQARIGIATLIRHYLDIIKSPGEQTFVPTTPVLXXXXXXXXXXXXXXXXXXXMAGM---IPSPSSSAWHESPYVVNKRWGSVVENCRIKELIDDCKAEVEALCEHYYQERIPPVVIDEPPGAVATLIPAHFHHTLFEILKNAFKATVESAVRRNLNNMPAVKVRIFPGKEEVCVRIRDFGDGMSLRTMSNATEYLFTSAAETYEXXXXXXXXXXXXAMEPMQGMGIGLPVSRLYARQLGGNIRLISVQGWGTDVAIYLSRKDLPEAIPVRVFD 499          
BLAST of NO20G00440 vs. NCBI_GenBank
Match: CEH15983.1 (mitochondrial pyruvate dehydrogenase [Ceraceosorus bombacis])

HSP 1 Score: 140.2 bits (352), Expect = 1.900e-29
Identity = 97/327 (29.66%), Postives = 159/327 (48.62%), Query Frame = 0
Query:  194 KDMKPMVI---ESFNTLMLGIEGRMAMVVETLMEGLKESYKMQEEGAPPPPGTDAVTPIVTSQVDRFLQARIGIATLIRHYLDIIKDPGAQNFVPPSTTLNSNGXXXXXXXXXXXXXXXXXDVPLTLPSPSVSSWHNSSYVVNKKWGSVVENCRIKELIEDCRAEVEALC-EHYYQERIPPLVIDEPPGAVATLIPAHFHHTLFEILKNAFKATVESAVRRNLNSMPAIKVRIFPGKEEVCIRVRDYGDGMSLLTMAKATEYLFTSAADYEVEQQRQQQSYQPTTEPMQGMGIGLPVSRLYARHWGGDIRVISVQGWGTDVAIYLSR 517
            K   P VI   ESF   +  I+ R   VV T+ +G+ E YK    G         +   V   +DRF  +RIGI  LI  ++ + +    Q     +TTL+ +                     ++ PS      HN      K  G +  N  +  +  +       +C EHY   + PP+ +  P       +P+H +H +FE+LKN+ +A VE     N ++ P IKV +  GKE++ I++ D G G+    M+    Y++T+A   +++   Q   ++    PM G G GLP++RLYAR++GGD+++IS++G+GTDV ++L+R
Sbjct:  187 KQWPPEVIDWNESFTQCLDKIKKRHDAVVTTVAQGVLE-YKRARRG-------QNIQADVQRFLDRFYMSRIGIRILIGQHIALARTSPDQ-----ATTLDGD---------------PIQQSRISAPSAGAGVGHNGG-EPEKYVGIICTNTNVGAIAHEAIENARFVCEEHYGLFKGPPVQLICPKDLTFMYVPSHLNHMMFELLKNSLRAVVERYGVENEDNFPPIKVIVVEGKEDITIKISDEGGGIPRSEMSLVWTYMYTTAQSEDLDPDFQASDFK---APMAGFGYGLPLARLYARYFGGDLKLISMEGYGTDVYLHLNR 481          
BLAST of NO20G00440 vs. NCBI_GenBank
Match: XP_004349449.2 (pyruvate DeHydogenase Kinase family member [Capsaspora owczarzaki ATCC 30864] >KJE91574.1 pyruvate DeHydogenase Kinase family member [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 139.4 bits (350), Expect = 3.200e-29
Identity = 112/398 (28.14%), Postives = 177/398 (44.47%), Query Frame = 0
Query:  142 LHRELRTRIGH---QILRLQHVLPASKGVDNLLVLHIDVYEQL--WALDKAIADLGTKDMKPMVIESFNTLMLGIEGRMAMVVETLMEG---LKESYKMQEEGAPPPPGTDAVTPIVTSQVDRFLQARIGIATLIRHYLDIIKDPGAQNFVPPSTTLNSNGXXXXXXXXXXXXXXXXXDVPLTLPSPSVSSWHNSSYVVNKKW-GSVVENCRIKELIEDCRAEVEALCEHYYQERIPPLVIDEP-----------PGAVA-----TLIPAHFHHTLFEILKNAFKATVESAVRRNLNSMPAIKVRIFPGKEEVCIRVRDYGDGMSLLTMAKATEYLFTSAADYEVEQQRQQQSYQPTTEPMQGMGIGLPVSRLYARHWGGDIRVISVQGWGTDVAIYL 515
            L  EL  R+ H   +I  L   L   + V  +   +I  +E L  + ++++IA    K      ++SF  ++  I  R A VV T+ +G   LKE+Y           G+DA    +   +DRF  +RIGI  LI  + ++  D  A N  PP                                               K W G + E C ++++ +D       LC+ +Y    P + +  P           P +VA       +P+H +H LFE+LKN+ +A VE     +  ++P ++VRI  G+E++ I++ D G G+    M     Y +T+A+  E+E      S      P+ G G GLP+SRLYAR++GGD+ +IS++G GTD  IYL
Sbjct:  154 LRNELPVRLAHMTKEIESLPEKLLGQQSVGRVHGWYIKSFEDLLNFPIEESIATASNKADAEHYVKSFTEVIRNIHRRHAPVVTTMAQGILALKEAY-----------GSDAYDRNIQYFLDRFYMSRIGIRMLIAQHCEVFGDDPALN--PP----------------------------------------------RKGWVGVIDEKCNVRQIADDAAQNARFLCDQHYFAS-PEVEVINPRASRASSAAGGPVSVAEDVCFPYVPSHLYHMLFELLKNSMRAVVEHH-GPDATTLPKVRVRIMKGEEDLTIKISDEGGGIPRSGMPHLFTYFYTTASPPELE---ANSSADMNHAPLAGFGYGLPLSRLYARYFGGDLHLISMEGHGTDAYIYL 487          
BLAST of NO20G00440 vs. NCBI_GenBank
Match: XP_016292108.1 (Protein kinase [Kalmanozyma brasiliensis GHG001] >EST07119.1 Protein kinase [Kalmanozyma brasiliensis GHG001])

HSP 1 Score: 135.6 bits (340), Expect = 4.600e-28
Identity = 91/318 (28.62%), Postives = 156/318 (49.06%), Query Frame = 0
Query:  202 ESFNTLMLGIEGRMAMVVETLMEGLKESYKMQEEGAPPPPGTDAVTPIVTSQVDRFLQARIGIATLIRHYLDIIK--DPGAQNFVPPSTTLNSNGXXXXXXXXXXXXXXXXXDVPLTLPSPSVSSWHNSSYVVNKKWGSVVENCRIKELIEDCRAEVEALC-EHYYQERIPPLVIDEPPGAVATLIPAHFHHTLFEILKNAFKATVESAVRRNLNSMPAIKVRIFPGKEEVCIRVRDYGDGMSLLTMAKATEYLFTSAADYEVEQQRQQQSYQPTTEPMQGMGIGLPVSRLYARHWGGDIRVISVQGWGTDVAIYLSR 517
            E F   +  I+ R   VV T+ +G+ E YK   +        + +   V S +DRF  +RIGI  LI  ++ + +     +   +   ++ NSNG                 D  L+     V    N  +   +  G +  N  +  +  +       +C EHY   + PP+ +  PP      +P+H +H LFE+LKN+ +A VE       ++ P IKV +  GKE++ I++ D G G+    M     Y++T+A   +++ +     ++    PM G G GLP++RLYAR++GGD+++IS++G+GTDV ++L+R
Sbjct:  183 EDFTKALEKIKKRHDAVVTTIAQGVLE-YKRSRK-------ANRLQADVQSFLDRFYLSRIGIRILIGQHIALSRSSQQPSSKLIGSGSSTNSNG-----------------DFSLSDQIARVKVDGNQEH--EQYVGIICTNTNVGAMAHEAIENARFVCEEHYGLFKGPPVQLVCPPDLTFMYVPSHLNHMLFELLKNSLRAVVERYGVEQEDNFPPIKVIVVEGKEDITIKISDEGGGIPRSEMPLVWTYMYTTAQSEDLDPEFNASDFK---APMAGFGYGLPLARLYARYFGGDLKLISMEGYGTDVYLHLNR 470          
BLAST of NO20G00440 vs. NCBI_GenBank
Match: XP_007881097.1 (hypothetical protein PFL1_05374 [Anthracocystis flocculosa PF-1] >EPQ27090.1 hypothetical protein PFL1_05374 [Anthracocystis flocculosa PF-1])

HSP 1 Score: 135.2 bits (339), Expect = 6.000e-28
Identity = 96/332 (28.92%), Postives = 161/332 (48.49%), Query Frame = 0
Query:  189 ADLGTKDMKPMVI---ESFNTLMLGIEGRMAMVVETLMEGLKESYKMQEEGAPPPPGTDAVTPIVTSQVDRFLQARIGIATLIRHYLDIIKDPGAQNFVPPSTTLNSNGXXXXXXXXXXXXXXXXXDVPLTLPSPSVSSWHNSSYVVNKKWGSVVENCRIKELIEDCRAEVEALC-EHYYQERIPPLVIDEPPGAVATLIPAHFHHTLFEILKNAFKATVESAVRRNLNSMPAIKVRIFPGKEEVCIRVRDYGDGMSLLTMAKATEYLFTSAADYEVEQQRQQQSYQPTTEPMQGMGIGLPVSRLYARHWGGDIRVISVQGWGTDVAIYLSR 517
            A+L  +   P +I   E F   +  I+ R   VV T+ +G+ E YK   +        + +   V S +DRF  +RIGI  LI  ++ +     ++     S+ L   G                 D+  +  SP     H   YV     G +  N  +  +  +       +C EHY   + PP+ +  P       +P+H +H LFE+LKN+ +A VE     N ++ P IKV +  GKE++ I++ D G G+    M     Y++T+A   +++ +     ++    PM G G GLP++RLYAR++GGD+++IS++G+GTDV ++L+R
Sbjct:  196 ANLPDQKWPPEIIQYNEDFTKALEKIKKRHDAVVTTVAQGVLE-YKRSRK-------ANTIQADVHSFLDRFYMSRIGIRILIGQHIAL-----SRTSPTTSSALLEGG-----------SVGLSNDIARSAGSP-----HGEEYV-----GIICTNTNVGAMAHEAIENARFVCEEHYGLFKGPPVQLVCPDDLEFMYVPSHLNHMLFELLKNSLRAVVERYGVENEDNFPPIKVIVVEGKEDITIKISDEGGGIPRSEMPLVWTYMYTTAQSEDLDPEFSASDFK---APMAGFGYGLPLARLYARYFGGDLKLISMEGYGTDVYLHLNR 490          
BLAST of NO20G00440 vs. NCBI_GenBank
Match: ORZ41243.1 (mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase-domain-containing protein [Catenaria anguillulae PL171])

HSP 1 Score: 135.2 bits (339), Expect = 6.000e-28
Identity = 103/327 (31.50%), Postives = 154/327 (47.09%), Query Frame = 0
Query:  203 SFNTLMLGIEGRMAMVVETLMEGLKESYKMQEEGAPPPPGTDAVTPIVTSQVDRFLQARIGIATLIRHYLDIIKDPGAQNFVPPSTTLNSNGXXXXXXXXXXXXXXXXXDVPLTLPSPSVSSWHNSSYVVNKKWGSVVENCRIKELIEDCRAEVEALCE-HYYQERIPPLVIDEPPGAVATLIPAHFHHTLFEILKNAFKATVESAVRRNLNSMPAIKVRIFPGKEEVCIRVRDYGDGMSLLTMAKATEYLFT---SAADYEVEQQRQQQSYQPTTEPMQGMGIGLPVSRLYARHWGGDIRVISVQGWGTDVAIYLSR-KDLPEHIP 525
            SF  L+  I+ R   VV T+ +G+KE    +        G D +   V S +DRF  +RIGI  LI  ++ +             TTL S                      L++P  S ++  N  YV     G +     I ++ ++       +CE HY     P + +  P       +P+H HH LFE+LKN+ +A VE     + +S P I + +  G+E++ I+V D G G+    M     YL+T   SA     E   QQQ       P+ G G GLP+SRLYAR++GGD+R+IS++G+GTD  ++LSR  D  E +P
Sbjct:  144 SFVDLISNIKRRHDPVVSTIAQGIKELKATR--------GLDNIDAPVQSFLDRFYMSRIGIRMLIGQHIALSN----------MTTLPSGS-------------------SLSMPKASGANTGN-DYV-----GIICLKTNIAQVAQEAIDNARFICEDHYALFSAPQVQLYCPEDLHFMYVPSHLHHMLFELLKNSLRAVVE-RYGPDADSFPPINIVVAEGQEDITIKVSDQGGGLPRSGMPLIWTYLYTTANSALTGSAEALGQQQHVNDFKAPLAGYGYGLPLSRLYARYFGGDLRLISMEGYGTDAYLHLSRLSDSEEPLP 426          
BLAST of NO20G00440 vs. NCBI_GenBank
Match: CBQ70049.1 (related to pyruvate dehydrogenase kinase isoform 2, mitochondrial [Sporisorium reilianum SRZ2] >SJX65698.1 related to pyruvate dehydrogenase kinase isoform 2, mitochondrial [Sporisorium reilianum f. sp. reilianum])

HSP 1 Score: 132.9 bits (333), Expect = 3.000e-27
Identity = 98/315 (31.11%), Postives = 161/315 (51.11%), Query Frame = 0
Query:  202 ESFNTLMLGIEGRMAMVVETLMEGLKESYKMQEEGAPPPPGTDAVTPIVTSQVDRFLQARIGIATLIRHYLDIIKDPGAQNFVPPSTTLNSNGXXXXXXXXXXXXXXXXXDVPLTLPSPSVSSWHNSSYVVNKKWGSVVENCRIKELIEDCRAEVEALCEHYYQERIPPLVIDEPPGAVATLIPAHFHHTLFEILKNAFKATVESAVRRNLNSMPAIKVRIFPGKEEVCIRVRDYGDGMSLLTMAKATEYLFTSAADYEVEQQRQQQSYQPTTEPMQGMGIGLPVSRLYARHWGGDIRVISVQGWGTDVAIYLSR 517
            E F   +  I+ R   VV T+ +G+ E YK   +        + +   V S +DRF  +RIGI  LI  ++ +     +++   PS+ L  +G  XXXXXXX           + +        +      N   G++       E IE+ R   E   EHY   + PP+ +  PP      +P+H +H LFE+LKN+ +A VE       ++ P IKV +  GKE++ I++ D G G+    M     Y++T+A   +++ +     ++    PM G G GLP++RLYAR++GGD+++IS++G+GTDV ++L+R
Sbjct:  178 EDFTKALEKIKKRHDAVVTTIAQGVLE-YKRSRK-------RNTLQADVQSFLDRFYLSRIGIRILIGQHIAL-----SRSSQRPSSKLIGSGVSXXXXXXXGDYSLSDQIARVKVDGNQEHEQYVGIICTNTNVGAMAH-----EAIENARFVCE---EHYGLFKGPPVQLVCPPDLTFMYVPSHLNHMLFELLKNSLRAVVERYGVEQEDNFPPIKVIVVEGKEDITIKISDEGGGIPRSEMPLVWTYMYTTAQSEDLDPEFNASDFK---APMAGFGYGLPLARLYARYFGGDLKLISMEGYGTDVYVHLNR 468          
BLAST of NO20G00440 vs. NCBI_GenBank
Match: CDS01887.1 (hypothetical protein [Sporisorium scitamineum] >CDS81863.1 related to pyruvate dehydrogenase kinase isoform 2, mitochondrial [Sporisorium scitamineum])

HSP 1 Score: 132.9 bits (333), Expect = 3.000e-27
Identity = 90/316 (28.48%), Postives = 155/316 (49.05%), Query Frame = 0
Query:  202 ESFNTLMLGIEGRMAMVVETLMEGLKESYKMQEEGAPPPPGTDAVTPIVTSQVDRFLQARIGIATLIRHYLDIIKDPGAQNFVPPSTTLNSNGXXXXXXXXXXXXXXXXXDVPLTLPSPSVSSWHNSSYVVNKKWGSVVENCRIKELIEDCRAEVEALC-EHYYQERIPPLVIDEPPGAVATLIPAHFHHTLFEILKNAFKATVESAVRRNLNSMPAIKVRIFPGKEEVCIRVRDYGDGMSLLTMAKATEYLFTSAADYEVEQQRQQQSYQPTTEPMQGMGIGLPVSRLYARHWGGDIRVISVQGWGTDVAIYLSR 517
            E F   +  I+ R   VV T+ +G+ E YK   +        + +   V S +DRF  +RIGI  LI  ++ +     +++   PS+ L  +G                  V +        +  +  YV     G +  N  +  +  +       +C EHY   + PP+ +  PP      +P+H +H LFE+LKN+ +A VE       ++ P IKV +  GKE++ I++ D G G+    M     Y++T+A   +++ +     ++    PM G G GLP++RLYAR++GGD+++IS++G+GTDV ++L+R
Sbjct:  183 EDFTKALEKIKKRHDAVVTTIAQGVLE-YKRSRK-------RNTLQADVQSFLDRFYLSRIGIRILIGQHIAL-----SRSSQRPSSKLIGSGASSSSNGGDYSLSDQIARVKVD------GNQEHEQYV-----GIICTNTNVGAMAHEAIENARFVCEEHYGLFKGPPVQLVCPPDLTFMYVPSHLNHMLFELLKNSLRAVVERYGVDQEDNFPPIKVIVVEGKEDITIKISDEGGGIPRSEMPLVWTYMYTTAQSEDLDPEFNASDFK---APMAGFGYGLPLARLYARYFGGDLKLISMEGYGTDVYVHLNR 471          
BLAST of NO20G00440 vs. NCBI_GenBank
Match: XP_009267040.1 (hypothetical protein J056_003549 [Wallemia ichthyophaga EXF-994] >EOR01873.1 hypothetical protein J056_003549 [Wallemia ichthyophaga EXF-994])

HSP 1 Score: 132.5 bits (332), Expect = 3.900e-27
Identity = 97/320 (30.31%), Postives = 150/320 (46.88%), Query Frame = 0
Query:  202 ESFNTLMLGIEGRMAMVVETLMEGLKESYKMQEEGAPPPPGTDAVTPIVTSQVDRFLQARIGIATLIRHYLDIIKDPGAQNFVPPSTTLNSNGXXXXXXXXXXXXXXXXXDVPLTLPSPSVSSWHNSSYVVNKKWGSVVENCRIKELIEDCRAEVEALCEHYYQERIPPLV-IDEPPGAVATLIPAHFHHTLFEILKNAFKATVESAVRRNLNSMPAIKVRIFPGKEEVCIRVRDYGDGMSLLTMAKATEYLFT----SAADYEVEQQRQQQSYQPTTEPMQGMGIGLPVSRLYARHWGGDIRVISVQGWGTDVAIYLSR 517
            ESF  L+ GI+ R   VV T+ +G+ E YK  +  A        V   + S +DRF  +RIGI  LI  ++       A N + P                                       H+  YV     G + +   ++++ ++       + E +Y    PP V +  PP    + +P H +H +FEI+KN+ +A +E       + MP IKV +  G E++ I++ D G G+    +     Y++T    SA D E E     QS      PM G+G GLP+SRLYAR++GGD+R+IS++G+GTDV I+L+R
Sbjct:  196 ESFTRLLEGIKRRHDSVVPTIAQGVLE-YKQHQRSA------GGVDTDIQSFLDRFYMSRIGIRFLIGQHV-------ALNALTP---------------------------------------HHPDYV-----GIICKRTNVRDVCDEAIDNARFIAEDHYALFKPPQVQLICPPNLEISYVPGHLNHIVFEIIKNSLRAVIERFGVDAEDQMPPIKVIVAAGNEDITIKISDEGGGIPRSAIPLIWTYMYTTMEGSALDPEFE-----QSGSDYKAPMAGLGYGLPLSRLYARYFGGDLRLISMEGYGTDVYIHLNR 452          
The following BLAST results are available for this feature:
BLAST of NO20G00440 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22159.14.600e-19880.05pyruvate dehydrogenase [Nannochloropsis gaditana][more]
XP_005854505.15.300e-19482.31pyruvate dehydrogenase [Nannochloropsis gaditana C... [more]
CEH15983.11.900e-2929.66mitochondrial pyruvate dehydrogenase [Ceraceosorus... [more]
XP_004349449.23.200e-2928.14pyruvate DeHydogenase Kinase family member [Capsas... [more]
XP_016292108.14.600e-2828.62Protein kinase [Kalmanozyma brasiliensis GHG001] >... [more]
XP_007881097.16.000e-2828.92hypothetical protein PFL1_05374 [Anthracocystis fl... [more]
ORZ41243.16.000e-2831.50mitochondrial branched-chain alpha-ketoacid dehydr... [more]
CBQ70049.13.000e-2731.11related to pyruvate dehydrogenase kinase isoform 2... [more]
CDS01887.13.000e-2728.48hypothetical protein [Sporisorium scitamineum] >CD... [more]
XP_009267040.13.900e-2730.31hypothetical protein J056_003549 [Wallemia ichthyo... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL024nonsL024Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR068ngnoR068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002596NSK002596Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G00440.1NO20G00440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594348gene_6258Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100064g27gene8279Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G00440.1NO20G00440.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G00440 ID=NO20G00440|Name=NO20G00440|organism=Nannochloropsis oceanica|type=gene|length=2655bp
ATGCTTTCCTCGGCTTCAAGCCTGCGGCAGCGCGCGACGACCTCCCCTAA
CTACGCCTTTTCAGCAGCCAATTTCTTCCTTCCCCGCGCCTGCATCACCA
GCACCAATAGCGTAAGCACTAGCAGTAGCAGTGATCGTAGTAGAAGCGCG
GCGACGCCTGTTTTCCAGCGGACACAAAGCACCATCCCTGCTGCCCGCTC
CTTTTCCTCCTTTCCTCCCGCCGCGAGACCCTTCCGCCGGACCCGCTCGT
CCCTCCCACTCTCCCAAACACGACAACAACGTCGTGGCATCGTCTCATTT
TCTCCAGAATTAGGTCGTCGCCTAGGAATTGATGCTCGAAGACAGGCCAA
GCCCTCACGGCCCTCGCAATTGATTGTCGTGGCTCAGTGCTTTACACCTC
TTCAGGGCGTGATAATCCAACAGCTCCACCGGGAGCTTCGGACACGCATC
GGGCATCAAATCCTCCGGCTACAGCACGTTTTACCCGCTAGCAAAGGTGT
GGATAATCTGCTTGTGTTGCACATTGACGTGTATGAGCAGTTGTGGGCCC
TGGACAAGGCCATCGCGGACCTGGGCACAAAGGACATGAAGCCCATGGTG
ATTGAAAGCTTTAATACTCTCATGTTGGGAATCGAGGGGAGAATGGCGAT
GGTCGTCGAGACTCTTATGGAAGGCTTGAAGGAGAGTTATAAAATGCAGG
AAGAGGGGGCGCCGCCTCCTCCGGGTACGGATGCAGTCACCCCCATTGTG
ACTTCGCAAGTAGATCGGTTCCTGCAAGCTAGGATCGGCATTGgtatata
ccctccctccctccctccctccctccctccctcccaccctctcttgatcc
ccttctccatcagaagcccttttccgcttttcgtgttctatcgacactcc
tttgatgcccatctcctgactgcccgctccaccttccccccctcccctct
attcctccctccctccctccctccctctatccctgccagCCACTCTCATT
CGGCATTACCTTGACATTATAAAGGACCCCGGCGCCCAGAACTTTGTTCC
TCCTTCTACCACGCTCAACAGCAACGGCAGCAGCAACGGCAGCAGCAGTA
AAGTGACTGAGGTCAAGGAAGAGGAGGAAGACGTGCCTTTGACGTTGCCC
TCCCCCTCGGTCTCCTCCTGGCATAATTCCTCCTATGTAGTGAATAAAAA
GTGGGGCTCGGTGGTGGAAAATTGTCGAATCAAGGAGTTGATTGAAGATT
GTCGTGCAGAGGTGGAGGCGTTGTGTGAGCATTATTACCAAGgtaaaccc
ccctccctcccttcctccctcccttcctcccttcctccctccctccctcc
cttcctccctccctccctcccttcctccctcccttccttcctccctccct
ccctccctccctccctccctccctcactcgctcgctcccttcctccctcc
cttcctcccttggggtcggtggccaagggactgtgcgggctccttacgtc
ctccactacaccctccttctctccctcccttcttgcctccctctctccct
accttctcatcctagggcttggattttttccaccacacgctctgcaaagt
tctcaagaagctccctcccccccaccccccaccctccctcccaccttcca
gAGCGCATTCCCCCTCTGGTCATCGACGAGCCTCCAGGGGCAGTGGCGAC
TTTGATTCCCGCCCATTTCCATCACACTCTCTTCGAGATTCTCAAGAACG
CATTCAAAGCGACTGTTGAAAGCGCCGTACGACGGAATTTGAACAGCATG
CCGGCAATCAAAGTCAGGgttcgtacgtcctctttccctcacatccttcc
ctttcctttctaccccccgtctggtctcccgtccccttcgttttttgaat
tgtatgcctgctatcacaggaaggttgccttttatccttccctccctccc
tccctccctccctccctccctccctccctccctccgccccagagttctgc
cttcccttttatcccccgtcaacccctaaccatcctccacttctccttcc
tcctttccccctccatcttttttttttttttttttttcctgtttttcgcc
tccttcgtcgccctatcgtcgattttgacaagcacctccacctctccccc
ccctctcggtccttcccctttccctccccctctccctccaatagATCTTC
CCGGGGAAAGAAGAAGTCTGCATCCGGGTACGTGACTACGGCGATGGCAT
GTCCCTCCTCACAATGGCCAAAGCCACAGAGTATCTCTTCACTTCCGCTG
CCGATTATGAGGTGGAGCAACAGCGGCAGCAGCAGAGCTACCAGCCGACT
ACGGAACCTATGCAGGGGATGGGTATCGGGCTCCCCGTCTCGAGGCTGTA
CGCCCGCCACTGGGGCGGAGgtgaggtagaagggaaggagggagggaaag
gagatgcatgcgtacatcctccacgaatcttctttcaacttacttcatcg
tccctgtcccccccctcccttccttcctccctccctccctccttccctcc
ctagACATCCGGGTCATCTCCGTGCAAGGATGGGGGACGGACGTGGCCAT
TTACTTGTCCCGCAAGGACTTGCCAGAGCACATTCCCATCCGGGTATTTG
ACTAA
back to top

protein sequence of NO20G00440.1

>NO20G00440.1-protein ID=NO20G00440.1-protein|Name=NO20G00440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=530bp
MLSSASSLRQRATTSPNYAFSAANFFLPRACITSTNSVSTSSSSDRSRSA
ATPVFQRTQSTIPAARSFSSFPPAARPFRRTRSSLPLSQTRQQRRGIVSF
SPELGRRLGIDARRQAKPSRPSQLIVVAQCFTPLQGVIIQQLHRELRTRI
GHQILRLQHVLPASKGVDNLLVLHIDVYEQLWALDKAIADLGTKDMKPMV
IESFNTLMLGIEGRMAMVVETLMEGLKESYKMQEEGAPPPPGTDAVTPIV
TSQVDRFLQARIGIATLIRHYLDIIKDPGAQNFVPPSTTLNSNGSSNGSS
SKVTEVKEEEEDVPLTLPSPSVSSWHNSSYVVNKKWGSVVENCRIKELIE
DCRAEVEALCEHYYQERIPPLVIDEPPGAVATLIPAHFHHTLFEILKNAF
KATVESAVRRNLNSMPAIKVRIFPGKEEVCIRVRDYGDGMSLLTMAKATE
YLFTSAADYEVEQQRQQQSYQPTTEPMQGMGIGLPVSRLYARHWGGDIRV
ISVQGWGTDVAIYLSRKDLPEHIPIRVFD*
back to top
Synonyms
Publications