NO20G00410, NO20G00410 (gene) Nannochloropsis oceanica

Overview
NameNO20G00410
Unique NameNO20G00410
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3264
Alignment locationchr20:133617..136880 -

Link to JBrowse

Properties
Property NameValue
DescriptionCyclin-like protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:133617..136880 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036915Cyclin-like_sf
IPR006671Cyclin_N
Homology
[Close]
BLAST of NO20G00410 vs. NCBI_GenBank
Match: EWM22155.1 (Cyclin-like protein [Nannochloropsis gaditana])

HSP 1 Score: 418.7 bits (1075), Expect = 4.600e-113
Identity = 291/627 (46.41%), Postives = 347/627 (55.34%), Query Frame = 0 
Query:   61 YMLRDDDGSKSLNCDEELGEEDASETAFAAETHPATVYQHQYGHGAVVPPHPL--LSQQPPQPQQPQLCFAASHALPPFPAPMAVMAITGVPPTASVARPSIAPFHPSSSLRNVLPSGXXXXXXXXXXXXXXXXXPSRASLGRTQSMPALSHIXXXXXXXXXRQRSYSSLSRPYRTRTGYFLSQHLDSVDEADFEDVAEMVVNMHVQERDYYAPPLAYFKHLEQDLILAHRRQGSVRWFSKVVQQVQANRETIPTATNFLDRYLAALLYPPLAG------PSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFFLWDERVFEKLAVCAFILAMKMQQGDSTSNVAKKLENLTSASLLTPGALCDMEFRMMGALGRYLNPPTAGTLIHHLLHFLPAHEGREGGRQSPASEGXXXXXXXXXXXXXXMKNKGLFLALDDHANDLALMALDTPGLIKFPVSVIAVAAILASFAW----------------------------------WLQTLDANDLKVEPQEISDCLGLLGRQAKKAAAVPDGCGGWEGSIYLPHFLALPPSLLPPLEVGGKGGGAVPCTPSPSYGGKP-VRVISPTGVEE 645
            +++ D+DG KSL+C+EELG  DA ET    E  P T    + G  +    HP   L + PPQPQ+   C                     +PP  ++A+      H   +    + SG           XXXXXX      GRT         XXXXXXXXX  RSYSSLSRPYR+RTG FLSQHLD+VDE+D EDVAEMV+NMH+QERDYYAPP AYF  LE+D +LA+ R+G+ +WFS+VVQ +  NRE IP ATNFLDRYLAA LYP L G      PS                                                            L DER FEK+AVCA ILA+KMQQGDST NVA+KL NLTSA  L+ GALC MEFRMMGALGRYLNPPT GTLIHHLLHFLPA                              +N+ LFL LDDHANDLALMAL+TP L++FPVS+IAVAAILASF W                                  WLQTLDA DLK++ +E  +CL +L R+AKKAAA+PD   GW GSIYLP FLALPP+LL   ++GG+    VP TP+P    +P V++ISP+GVE+
Sbjct:   57 FVMSDEDG-KSLDCNEELG--DALETTLGVENRPPTFSNDRPGIRSEPQTHPFQHLQRFPPQPQRVSDC---------------------IPPPLNMAKVPKFSEHCGRTSVTRITSG----------HXXXXXXXXXXXXGRTXXXXXXXXXXXXXXXXXXXXRSYSSLSRPYRSRTGQFLSQHLDAVDESDPEDVAEMVLNMHIQERDYYAPPWAYFCRLEKDPVLAYWRRGAFQWFSRVVQHMLGNREIIPMATNFLDRYLAASLYPHLTGPYAASHPSPVAPWAPMSGEGLETEGECSPALGVGHGWEGQENFGRVLSAASPSLGQLDGSDEVPVPAVLADERTFEKVAVCALILALKMQQGDSTMNVARKLTNLTSACHLSQGALCAMEFRMMGALGRYLNPPTPGTLIHHLLHFLPARR----------------------------ENRALFLVLDDHANDLALMALETPELVRFPVSIIAVAAILASFGWVRSCLKGEGAGAVGGPMESGHHGEEEMSPGMEMEWLQTLDAKDLKIDWEEAHNCLEVLAREAKKAAALPDRGEGWGGSIYLPQFLALPPALLS--QLGGR-PTCVPHTPAPCAEVEPGVQMISPSGVED 618
[Close]
BLAST of NO20G00410 vs. NCBI_GenBank
Match: XP_005853835.1 (hypothetical protein NGA_0476701, partial [Nannochloropsis gaditana CCMP526] >EKU22525.1 hypothetical protein NGA_0476701, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 215.7 bits (548), Expect = 6.000e-52
Identity = 170/389 (43.70%), Postives = 203/389 (52.19%), Query Frame = 0 
Query:   61 YMLRDDDGSKSLNCDEELGEEDASETAFAAETHPATVYQHQYGHGAVVPPHPL--LSQQPPQPQQPQLCFAASHALPPFPAPMAVMAITGVPPTASVARPSIAPFHPSSSLRNVLPSGXXXXXXXXXXXXXXXXXPSRASLGRTQSMPALSHIXXXXXXXXXRQRSYSSLSRPYRTRTGYFLSQHLDSVDEADFEDVAEMVVNMHVQERDYYAPPLAYFKHLEQDLILAHRRQGSVRWFSKVVQQVQANRETIPTATNFLDRYLAALLYPPLAG------PSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFFLWDERVFEKLAVCAFILAMKMQQGDSTSNVAKKLENLTSASLLTPGA 442
            +++ D+DG KSL+C+EELG  DA ET    E  P T    + G  +    HP   L + PPQPQ+   C                     +PP  ++A+      H   +    + SG           XXXXXX      GRT         XXXXXXXXX  RSYSSLSRPYR+RTG FLSQHLD+VDE+D EDVAEMV+NMH+QERDYYAPP AYF  LE+D +LA+ R+G+ +WFS+VVQ +  NRE IP ATNFLDRYLAA LYP L G      PS                                                            L DER FEK+AVCA ILA+KMQQGDST NVA+KL NLTSA  L+ GA
Sbjct:   90 FVMSDEDG-KSLDCNEELG--DALETTLGVENRPPTFSNDRPGIRSEPQTHPFQHLQRFPPQPQRVSDC---------------------IPPPLNMAKVPKFSEHCGRTSVTRITSG----------HXXXXXXXXXXXXGRTXXXXXXXXXXXXXXXXXXXXRSYSSLSRPYRSRTGQFLSQHLDAVDESDPEDVAEMVLNMHIQERDYYAPPWAYFCRLEKDPVLAYWRRGAFQWFSRVVQHMLGNREIIPMATNFLDRYLAASLYPHLTGPYAASHPSPVAPWAPMSGEGLETEGECSPALGVGHGWEGQENFGRVLSAASPSLGQLDGSDEVPVPAVLADERTFEKVAVCALILALKMQQGDSTMNVARKLTNLTSACHLSQGA 444
The following BLAST results are available for this feature:
BLAST of NO20G00410 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM22155.14.600e-11346.41Cyclin-like protein [Nannochloropsis gaditana][more]
XP_005853835.16.000e-5243.70hypothetical protein NGA_0476701, partial [Nannoch... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL024nonsL024Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR068ngnoR068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002601NSK002601Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G00410.1NO20G00410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|631420gene_6252Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100064g21gene8283Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G00410.1NO20G00410.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G00410 ID=NO20G00410|Name=NO20G00410|organism=Nannochloropsis oceanica|type=gene|length=3264bp
ATGATGCCGGGCGACGTGTTGCTTAGCAACAGCATCGGCGGGGGGCGTCT
CGCTTCCTTCTCCGACAATCCCAGGCCGTCCACCGCTTCGTATCATCACC
ACTACCCGCAGCCCCTGCAAATGCAGCACCAGGAAGAGAAGAATGAAGAG
GAAGAGGAGGAGAAAGATTGCACGGACTTGTATATGCTGCGCGACGACGA
CGGAAGCAAAAGCCTCAACTGCGACGAGGAGCTCGGGGAGGAGGATGCCA
GCGAGACCGCCTTCGCTGCCGAGgtaagagctgatttgatgagtcacggg
cattaaaaaacatcgctatttaccctttctatgttccttcatttcttcat
agACACATCCTGCGACCGTGTACCAGCACCAGTATGGCCACGGAGCCGTC
GTCCCGCCTCATCCGCTCCTTTCCCAGCAACCACCGCAGCCGCAGCAGCC
GCAGCTTTGTTTTGCCGCCTCCCATGCCCTTCCTCCTTTCCCCGCCCCGA
TGGCTGTGATGGCGATTACAGGGGTCCCTCCGACTGCATCCGTCGCACGC
CCGAGTATTGCCCCTTTCCACCCCTCCTCGAGCCTACGCAACGTCCTTCC
TAGCGGGCCACCACAACAACAACACAAACCTCCCCCTCCGACCCTCCCAC
CTCCTCTCCCTTCCCGGGCATCTCTCGGGCGCACGCAAAGCATGCCCGCT
CTTTCCCATATCCCTCCTCCCCCTCCTCCTCACCTGCTGCGACAACGCTC
CTACTCCTCCTTATCTCGGCCTTACCGCACCCGGACCGGGTATTTCCTTT
CCCAGCACTTGGACTCAGTGGACGAAGCAGACTTCGAAGACGTGGCTGAG
ATGGTTGTTAATATGCACGTACAAGAGCGAGATTACTACGCCCCCCCTCT
CGCGTACTTTAAGCACTTGGAGCAGgtacgttgttccacctttctacttt
ctctccctcccttcctccctctctcccttcctcccttccatcctggatcc
atgtgtaagcgtcggccaccagcagctcatgcgttccctctcacacgacc
ctccgtccctcccttcttgcctccctctcccagGACCTCATCCTTGCCCA
CCGTCGTCAAGGCTCTGTTCGATGGTTCTCGAAAGTCGTCCAGCAGGTCC
AGGCCAACCGCGAGACCATCCCCACTGCCACCAATTTCCTCGATCGCTAC
CTCGCCGCCCTTCTCTACCCTCCCCTTGCCGGACCTTCCGCCACCTCGGC
CACCACCACCTCTACAGCTGCTCCTGCTCCTGCGGCTTCTGCTCCTGCTG
GTCCTGTGGGGATGACGGTGGCAGGCACCCGTTCCACAGCTGCAGAGACC
GCCAACAGCAGTAACATTGACAGCAGCAGCAGCAACAGCAGCAGTAGTAC
AACCACCACGCCGTTTTTCCTGTGGGACGAGCGGGTCTTCGAGAAGCTGG
CCGTGTGCGCCTTCATCCTTGCCATGAAAATGCAGCAAGGGGACAGCACT
TCCAATGTCGCCAAAAAGCTTGAAAATTTGACGTCCGCCTCCCTCCTTAC
ACCTGGAGCGCTCTGCGATATGGAATTTCGGATGATGGGAGCCCTTGGCC
GTTACTTGAACCCCCCAACGGCCGGGACGTTAATTCATCATCTGCTCCAC
TTCCTCCCGGCTCATGAAGGGAGGGAAGGAGGGCGTCAGTCGCCGGCTTC
AGAAGGCCTGGGAGGACGAGGAGGCAGGGAGGGAGGAAGGGATGGAGGGA
TGAAGAACAAAGGACTCTTTTTAGCCCTGGATGACCATGCCAATGACCTG
GCATTGATGGCCCTCGACACGCCGGGGTTAATCAAATTCCCTGTGAGTGT
GATTGCCGTTGCCGCCATCCTGGCCTCCTTCGCCTGGgtccggtcctcga
tgaaagggggggggggagggaggaaggggaggggttggatccgactctgg
agatgcagTGGCTTCAGACGCTGGACGCCAACGACCTGAAAGTGGAACCG
CAGGAGATCAGCGATTGCTTGGGGCTATTAGGGAGACAGGCCAAGAAGGC
CGCAGCCGTGCCGGACGGATGTGGGGGTTGGGAAGGCTCGATCTACCTCC
CGCATTTCCTTGCCCTTCCTCCCTCCCTCCTTCCGCCCTTGGAGGTGGGA
GGAAAGGGAGGGGGGGCTGTGCCTTGCACGCCTTCTCCTTCGTACGGTGG
CAAGCCAGTCCGGGTAATCAGTCCGACTGGAGTCGAGGAAATAGAAATAA
TGGAGCAGCAGCAGCGCCAGCAGCACCAGCAGCAGGGGGAAAGAGGAGCA
AAGGTGGCTTCGAGTACTTTTCAAAAGTATGATTTTGCACTCCACCAGCA
GCAGCCGCAGCAGCACCAGCACCAGCACCAGCACCAGCACCAGCAACAAC
AGTACCACCACCACCACCTCCAGCGCTCGCACATGCAGGCGGAAGGAAGA
TGTGGAGGAGGAAGAGGAGGTGGAGAGGAGGAAATGGAAATGCGTCCGGC
AGTCCCTCATTTGCAGATTTCCAGGGCCCACTCACAACCCTTCCCGTGCC
ACTCCGACCTCTACCAACAGCAGCTCCAGCAGCAGCGGCACTTGCAGCAG
CAGCTGTTGCGCAAGCAGCAGCGGGATCAAGATGTATATCGGCTTGAGCA
GCAGCACTTGCAGTGGCAGCAGCAGCAGCAGCAGCAACAGCAACAACAGC
AATATCAGCAGCAGCAGCAGCAGCACTGGCTATAgttaaaagtgtttctt
tcagaaatgattactttatttactttctgtattttagccattgtctgagt
ggtcattatgacgagggaggaaggaagggaggaagggaggcgtgagaaag
ggcatcagcaagaattttggacagggagggagggagggaggaaggggggg
gggaggggaggaagtacacagcagccacttgtaagggttttgacaagcat
ttgataacagTACTAGTAACAGTATTGGTAGCATCAAACTAGCGCCAATT
CCAGCAACAGCACCAGCAGTAGCAGCGCCAGCAGCCAGCCCTACGACGTT
CGCGCGGACTTTCTTGACCGCGGGGAAGCAGCAGCAACAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAACAGCAGCAAGAGGGGAAGAGGGAGGGCCCACGAGAAGGCGAACA
TCATGCTGGGCCAGACGAAGAAAAATATAGAGACAGAAGCAAGTTTATCG
ACTTGCCATTTTGA
back to top

protein sequence of NO20G00410.1

>NO20G00410.1-protein ID=NO20G00410.1-protein|Name=NO20G00410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=910bp
MMPGDVLLSNSIGGGRLASFSDNPRPSTASYHHHYPQPLQMQHQEEKNEE
EEEEKDCTDLYMLRDDDGSKSLNCDEELGEEDASETAFAAETHPATVYQH
QYGHGAVVPPHPLLSQQPPQPQQPQLCFAASHALPPFPAPMAVMAITGVP
PTASVARPSIAPFHPSSSLRNVLPSGPPQQQHKPPPPTLPPPLPSRASLG
RTQSMPALSHIPPPPPPHLLRQRSYSSLSRPYRTRTGYFLSQHLDSVDEA
DFEDVAEMVVNMHVQERDYYAPPLAYFKHLEQDLILAHRRQGSVRWFSKV
VQQVQANRETIPTATNFLDRYLAALLYPPLAGPSATSATTTSTAAPAPAA
SAPAGPVGMTVAGTRSTAAETANSSNIDSSSSNSSSSTTTTPFFLWDERV
FEKLAVCAFILAMKMQQGDSTSNVAKKLENLTSASLLTPGALCDMEFRMM
GALGRYLNPPTAGTLIHHLLHFLPAHEGREGGRQSPASEGLGGRGGREGG
RDGGMKNKGLFLALDDHANDLALMALDTPGLIKFPVSVIAVAAILASFAW
WLQTLDANDLKVEPQEISDCLGLLGRQAKKAAAVPDGCGGWEGSIYLPHF
LALPPSLLPPLEVGGKGGGAVPCTPSPSYGGKPVRVISPTGVEEIEIMEQ
QQRQQHQQQGERGAKVASSTFQKYDFALHQQQPQQHQHQHQHQHQQQQYH
HHHLQRSHMQAEGRCGGGRGGGEEEMEMRPAVPHLQISRAHSQPFPCHSD
LYQQQLQQQRHLQQQLLRKQQRDQDVYRLEQQHLQWQQQQQQQQQQQQYQ
QQQQQHWLYTSNSIGSIKLAPIPATAPAVAAPAASPTTFARTFLTAGKQQ
QQQQQQQQQQQQQQQQQQQQQQQQQQQEGKREGPREGEHHAGPDEEKYRD
RSKFIDLPF*
back to top
Synonyms
Publications