NO20G00380, NO20G00380 (gene) Nannochloropsis oceanica

Overview
NameNO20G00380
Unique NameNO20G00380
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1835
Alignment locationchr20:127341..129175 +

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Properties
Property NameValue
DescriptionCytochrome b5 domain-containing
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:127341..129175 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036400Cyt_B5-like_heme/steroid_sf
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO20G00380 vs. NCBI_GenBank
Match: EWM22140.1 (cytochrome b5 domain-containing [Nannochloropsis gaditana])

HSP 1 Score: 270.8 bits (691), Expect = 4.500e-69
Identity = 147/264 (55.68%), Postives = 180/264 (68.18%), Query Frame = 0
Query:    1 MRKRTAGQRGLDYMVLPTADELAAELREREKNKGPSPKEIVKYAFFGFVAIILLMGMGWHLGQHQRRRNNGLSPTDLARARRAAHQAA---FPQDPDKPSILSLVQAEEDALPGVPRLFTFSELQQAKHDYLASSSPSSSSQPPIYLAIVGHVFDVSKGDQFYAPPDEKEGGREGGGYGFFAFRDAARAYVTGDFSKEGLREDVEGLKEEECRGVWRWVNFFKDKEEYPFVGRLVGMYFDADGRPTRSYLNFRACVGTGGGGRG 262
            MRKRTAGQR LDYMVLPTA+EL  EL  ++K KGPS ++I+  A FG  A ++++ +GW LG+  R +  G SP+DL ++R AA +AA      +P + SILS+V+AEE+AL  VPRLFT ++LQ+AK  Y  ++SPS+    PI LAIVGHVFDVSKG QFYAPP  +E G                              DV+GL EEECRGVWRWVNFFK+KE+YPFVGRLVGMYFD DGRPTR+YLNFRACVG  G G G
Sbjct:    1 MRKRTAGQRSLDYMVLPTAEELVEEL--KKKQKGPSSRDILGRAMFGVAAFLVMITIGWQLGKLHRHK-KGYSPSDLVKSRSAAKKAAASTLSPEPSRQSILSMVEAEEEALAPVPRLFTAADLQRAKDAY-TTASPSTH---PILLAIVGHVFDVSKGAQFYAPPPVEEAG----------------GXXXXXXXXXXXXXDVDGLSEEECRGVWRWVNFFKEKEDYPFVGRLVGMYFDGDGRPTRNYLNFRACVGRAGQGEG 241          
BLAST of NO20G00380 vs. NCBI_GenBank
Match: XP_023223791.1 (neuferricin-like [Centruroides sculpturatus])

HSP 1 Score: 121.3 bits (303), Expect = 4.400e-24
Identity = 65/150 (43.33%), Postives = 91/150 (60.67%), Query Frame = 0
Query:  104 AEEDALPGVPRLFTFSELQQAKHDYLASSSPSSSSQPPIYLAIVGHVFDVSKGDQFYAPPDEKEGGREGGGYGFFAFRDAARAYVTGDFSKEGLREDVEGLKEEECRGVWRWVNFFKDKEEYPFVGRLVGMYFDADGRPTRSYLNFRACV 254
            +E  ++    R+FT  EL  +K+D        S S P +YLAI+G VFDV KG Q Y P         GGGY FFA RDA RAYVTGDFS +GL ++++GL+     G+  W++F+  +EEY +VG+L+G Y+D +G PT  Y + R  +
Sbjct:   50 SESQSISSGERIFTVEEL--SKYD-------GSGSSPGLYLAILGKVFDVEKGAQHYRP---------GGGYSFFAGRDATRAYVTGDFSDQGLVDNIDGLESSALLGIDDWLHFY--EEEYIYVGKLIGRYYDKNGNPTEEYKSARQAI 179          
BLAST of NO20G00380 vs. NCBI_GenBank
Match: KFM63298.1 (Neuferricin, partial [Stegodyphus mimosarum])

HSP 1 Score: 110.9 bits (276), Expect = 5.900e-21
Identity = 62/137 (45.26%), Postives = 82/137 (59.85%), Query Frame = 0
Query:  114 RLFTFSELQQAKHDYLASSSPSSSSQPPIYLAIVGHVFDVSKGDQFYAPPDEKEGGREGGGYGFFAFRDAARAYVTGDFSKEGLREDVEGLKEEECRGVWRWVNFFKDKEEYPFVGRLVGMYFDADGRPTRSYLNFR 251
            +LFT  EL+  K+D      P S     +YLAI+G VFDV KG Q Y P         GGGY FF  RDA+RAY+TGDF++ GL +DV GL +    G+  W++F+   EEY  VG+L+G Y+D +G PT+  L  R
Sbjct:   74 KLFTVDELK--KYD----GGPDSDG---LYLAILGEVFDVEKGAQHYRP---------GGGYSFFTGRDASRAYITGDFTENGLTDDVSGLDDASLVGIEDWLSFY--SEEYKPVGKLIGRYYDQNGNPTKELLTVR 190          
BLAST of NO20G00380 vs. NCBI_GenBank
Match: XP_013783549.1 (neuferricin-like isoform X1 [Limulus polyphemus])

HSP 1 Score: 109.0 bits (271), Expect = 2.300e-20
Identity = 54/112 (48.21%), Postives = 71/112 (63.39%), Query Frame = 0
Query:  142 IYLAIVGHVFDVSKGDQFYAPPDEKEGGREGGGYGFFAFRDAARAYVTGDFSKEGLREDVEGLKEEECRGVWRWVNFFKDKEEYPFVGRLVGMYFDADGRPTRSYLNFRACV 254
            +YLA +G V+DV +G Q Y P          GGY FFA RDA RAYVTGDFS EGL +DV+GL  EE  G+  W+ F+    EY +VG++VG Y+D DG PT++  +  A +
Sbjct:   72 LYLAFLGKVYDVREGAQHYKP---------SGGYSFFAGRDATRAYVTGDFSDEGLIDDVKGLSNEEMMGINNWMEFY--DSEYVYVGKVVGRYYDKDGHPTQALQDALAAI 172          
BLAST of NO20G00380 vs. NCBI_GenBank
Match: XP_022251614.1 (neuferricin-like isoform X2 [Limulus polyphemus])

HSP 1 Score: 109.0 bits (271), Expect = 2.300e-20
Identity = 54/112 (48.21%), Postives = 71/112 (63.39%), Query Frame = 0
Query:  142 IYLAIVGHVFDVSKGDQFYAPPDEKEGGREGGGYGFFAFRDAARAYVTGDFSKEGLREDVEGLKEEECRGVWRWVNFFKDKEEYPFVGRLVGMYFDADGRPTRSYLNFRACV 254
            +YLA +G V+DV +G Q Y P          GGY FFA RDA RAYVTGDFS EGL +DV+GL  EE  G+  W+ F+    EY +VG++VG Y+D DG PT++  +  A +
Sbjct:   40 LYLAFLGKVYDVREGAQHYKP---------SGGYSFFAGRDATRAYVTGDFSDEGLIDDVKGLSNEEMMGINNWMEFY--DSEYVYVGKVVGRYYDKDGHPTQALQDALAAI 140          
BLAST of NO20G00380 vs. NCBI_GenBank
Match: XP_022101131.1 (neuferricin-like [Acanthaster planci] >XP_022101132.1 neuferricin-like [Acanthaster planci] >XP_022101133.1 neuferricin-like [Acanthaster planci])

HSP 1 Score: 108.2 bits (269), Expect = 3.900e-20
Identity = 61/133 (45.86%), Postives = 81/133 (60.90%), Query Frame = 0
Query:  111 GVPRLFTFSELQQAKHDYLASSSPSSSSQPPIYLAIVGHVFDVSKGDQFYAPPDEKEGGREGGGYGFFAFRDAARAYVTGDFSKEGLREDVEGLKEEECRGVWRWVNFFKDKEEYPFVGRLVGMYFDADGRPT 244
            G+P       L+    + LA    +  S+  +YLA+ G VFDV KG + Y P         GGGY FFA RDA RAYVTG+F++EGL++DVEGL  ++   V  WV+F+  K+EY  VG+LVG Y+DA G PT
Sbjct:   56 GIPPSRAKQPLRLLSKEELAQYDGNEGSK-GLYLAVFGQVFDVKKGARHYGP---------GGGYEFFAGRDATRAYVTGEFNEEGLKDDVEGLSPQQMLEVETWVDFY--KKEYTPVGKLVGRYYDATGAPT 176          
BLAST of NO20G00380 vs. NCBI_GenBank
Match: XP_006007296.1 (PREDICTED: neuferricin isoform X1 [Latimeria chalumnae])

HSP 1 Score: 107.5 bits (267), Expect = 6.600e-20
Identity = 73/192 (38.02%), Postives = 98/192 (51.04%), Query Frame = 0
Query:   74 PTDLARARRAAHQAA----FPQDPDKPSILSLVQAEEDALPGVPRLFTFSELQQAKHDYLASSSP-----SSSSQPPIYLAIVGHVFDVSKGDQFYAPPDEKEGGREGGGYGFFAFRDAARAYVTGDFSKEGLREDVEGLKEEECRGVWRWVNFFKDKEEYPFVGRLVGMYFDADGRPTRSYLNFRACVGTG 257
            P ++ R   AA  AA    F  DP  P  L         L G+ RL   S L  +K   L S +        +  P +YLA++G VFDV KG + Y P         GG Y FFA +DA+RA+VTGDF++ GL EDV GL   E   +  W++F+  K++Y FVG+L+G ++D  G PT S     A V  G
Sbjct:   13 PAEMLRCFLAAVCAAVALLFGFDPSVPGHL---------LDGLSRLLAVSGLAGSKPVRLLSKAELCRYNGGADSPGLYLAVLGQVFDVKKGMRQYGP---------GGSYSFFAGKDASRAFVTGDFTEMGLVEDVAGLSPSEMVALHDWLSFY--KKDYIFVGKLIGQFYDEHGDPTESLKEAEALVAEG 184          
BLAST of NO20G00380 vs. NCBI_GenBank
Match: XP_006007297.1 (PREDICTED: neuferricin isoform X2 [Latimeria chalumnae])

HSP 1 Score: 107.5 bits (267), Expect = 6.600e-20
Identity = 73/192 (38.02%), Postives = 98/192 (51.04%), Query Frame = 0
Query:   74 PTDLARARRAAHQAA----FPQDPDKPSILSLVQAEEDALPGVPRLFTFSELQQAKHDYLASSSP-----SSSSQPPIYLAIVGHVFDVSKGDQFYAPPDEKEGGREGGGYGFFAFRDAARAYVTGDFSKEGLREDVEGLKEEECRGVWRWVNFFKDKEEYPFVGRLVGMYFDADGRPTRSYLNFRACVGTG 257
            P ++ R   AA  AA    F  DP  P  L         L G+ RL   S L  +K   L S +        +  P +YLA++G VFDV KG + Y P         GG Y FFA +DA+RA+VTGDF++ GL EDV GL   E   +  W++F+  K++Y FVG+L+G ++D  G PT S     A V  G
Sbjct:   13 PAEMLRCFLAAVCAAVALLFGFDPSVPGHL---------LDGLSRLLAVSGLAGSKPVRLLSKAELCRYNGGADSPGLYLAVLGQVFDVKKGMRQYGP---------GGSYSFFAGKDASRAFVTGDFTEMGLVEDVAGLSPSEMVALHDWLSFY--KKDYIFVGKLIGQFYDEHGDPTESLKEAEALVAEG 184          
BLAST of NO20G00380 vs. NCBI_GenBank
Match: XP_006007298.1 (PREDICTED: neuferricin isoform X3 [Latimeria chalumnae])

HSP 1 Score: 107.5 bits (267), Expect = 6.600e-20
Identity = 73/192 (38.02%), Postives = 98/192 (51.04%), Query Frame = 0
Query:   74 PTDLARARRAAHQAA----FPQDPDKPSILSLVQAEEDALPGVPRLFTFSELQQAKHDYLASSSP-----SSSSQPPIYLAIVGHVFDVSKGDQFYAPPDEKEGGREGGGYGFFAFRDAARAYVTGDFSKEGLREDVEGLKEEECRGVWRWVNFFKDKEEYPFVGRLVGMYFDADGRPTRSYLNFRACVGTG 257
            P ++ R   AA  AA    F  DP  P  L         L G+ RL   S L  +K   L S +        +  P +YLA++G VFDV KG + Y P         GG Y FFA +DA+RA+VTGDF++ GL EDV GL   E   +  W++F+  K++Y FVG+L+G ++D  G PT S     A V  G
Sbjct:   13 PAEMLRCFLAAVCAAVALLFGFDPSVPGHL---------LDGLSRLLAVSGLAGSKPVRLLSKAELCRYNGGADSPGLYLAVLGQVFDVKKGMRQYGP---------GGSYSFFAGKDASRAFVTGDFTEMGLVEDVAGLSPSEMVALHDWLSFY--KKDYIFVGKLIGQFYDEHGDPTESLKEAEALVAEG 184          
BLAST of NO20G00380 vs. NCBI_GenBank
Match: XP_002115171.1 (hypothetical protein TRIADDRAFT_16260 [Trichoplax adhaerens] >EDV22627.1 hypothetical protein TRIADDRAFT_16260, partial [Trichoplax adhaerens])

HSP 1 Score: 105.5 bits (262), Expect = 2.500e-19
Identity = 52/129 (40.31%), Postives = 81/129 (62.79%), Query Frame = 0
Query:  114 RLFTFSELQQAKHDYLASSSPSSSSQPPIYLAIVGHVFDVSKGDQFYAPPDEKEGGREGGGYGFFAFRDAARAYVTGDFSKEGLREDVEGLKEEECRGVWRWVNFFKDKEEYPFVGRLVGMYFDADGRP 243
            ++FT S+L+Q   D           Q PIYLA++G VFDV+KG + Y          +GGGY FF+ RD  RA+VTGDFS++GL ++++GL  E   G+  W++F+   ++Y +VG+L+G +++A G P
Sbjct:    4 QIFTASDLKQYNGD---------DPQKPIYLAVLGQVFDVTKGKEHYG---------KGGGYNFFSGRDGTRAFVTGDFSEKGLNDEIKGLSHENFIGIKEWIDFY--HKDYSYVGKLIGRFYNAKGEP 112          
The following BLAST results are available for this feature:
BLAST of NO20G00380 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22140.14.500e-6955.68cytochrome b5 domain-containing [Nannochloropsis g... [more]
XP_023223791.14.400e-2443.33neuferricin-like [Centruroides sculpturatus][more]
KFM63298.15.900e-2145.26Neuferricin, partial [Stegodyphus mimosarum][more]
XP_013783549.12.300e-2048.21neuferricin-like isoform X1 [Limulus polyphemus][more]
XP_022251614.12.300e-2048.21neuferricin-like isoform X2 [Limulus polyphemus][more]
XP_022101131.13.900e-2045.86neuferricin-like [Acanthaster planci] >XP_02210113... [more]
XP_006007296.16.600e-2038.02PREDICTED: neuferricin isoform X1 [Latimeria chalu... [more]
XP_006007297.16.600e-2038.02PREDICTED: neuferricin isoform X2 [Latimeria chalu... [more]
XP_006007298.16.600e-2038.02PREDICTED: neuferricin isoform X3 [Latimeria chalu... [more]
XP_002115171.12.500e-1940.31hypothetical protein TRIADDRAFT_16260 [Trichoplax ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL024nonsL024Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR068ngnoR068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002604NSK002604Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G00380.1NO20G00380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|87914gene_6249Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100064g17gene8286Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G00380.1NO20G00380.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G00380 ID=NO20G00380|Name=NO20G00380|organism=Nannochloropsis oceanica|type=gene|length=1835bp
GTCCCATTGGCTCTTCTAGGCCTGATCACATCGAGTTACAATGCTTAAAG
CATGTGATCAAGATACGGTGGATGGTCAATTTTGTGCAAACACATGTGGG
TGTTGCCATTAGAGAGACTTTGATTTCATGTGGTGGTTAACCAATATCCC
CGTTAAGATGACCTCCCCTTCCTCACAGGCCTTGTTGTACAAAACGCACA
TCACACATAGGCACAGCAGCGATGCGCAAGCGCACCGCAGGCCAACGGGG
CCTGGACTACATGGTGCTGCCTACCGCGGACGAGCTGGCTGCGGAGCTGA
GGGAGAGAGgtatgcgcgtgggggactgaattcgggtgtggctatgtagc
tcctcaattcccgacgcgcctgacaggtgcatccatggctagtctccgct
ttccatgtcctccattgagacatgctcttttgccacaaactaatgtatcc
tctctctatctcactgatgctagattttatcgcattcctctcattgtctt
ttttctcctcccatcctcctctctctccttacccctcccctggataagAA
AAAAACAAAGGACCCTCCCCTAAAGAAATCGTCAAATACGCTTTTTTTGG
CTTTGTAGCTATCATCCTCCTCATGGGGATGGGCTGGCATCTCGGTCAAC
ACCAGCGGAGACGAAACAATGGCCTTTCACCCACTGATCTCGCCCGTGCC
CGGCGCGCTGCTCATCAAGCCGCCTTCCCTCAGGACCCGGACAAACCAAG
TATACTTTCCCTCGTTCAAGCAGAGGAGGATGCCTTGCCCGGGGTACCCC
GTCTTTTCACCTTTTCCGAGCTCCAGCAGGCAAAACACGACTATCTTGCA
TCCTCTTCCCCCTCCTCTTCCTCCCAACCTCCCATCTACCTCGCAATTGT
TGGCCATGTCTTCGACGTCTCGAAAGGTGACCAATTCTACGCTCCACCGG
ACGAGAAGGAGGGAGGGAGGGAAGGCGGAGGCTATGGATTCTTTGCCTTC
CGTGACGCGGCCCGCGCCTATGTCACAGGCGACTTCTCGAAGGAGGGACT
GAGGGAAGACGTAGAAGGGCTGAAGGAGGAAGAATGCCGGGGTGTGTGGC
GGTGGGTGAATTTTTTCAAGGACAAGGAGGAATACCCCTTTGTGGGGAGG
TTGGTGGGCATGTATTTTGACGCGGACGGGAGGCCGACGAGGAGTTACTT
GAATTTTAGGGCTTGTGTAGGGACGGGAGGGGGGGGAAGGGGGTAGGCGG
GGAGGAGGGGGAGGAGGAGGCATGTGCGACCAGCTGGGAGAGGGGAAAGG
GACATACGGTTTGGTGCGAGGGATCAGATGGGAAGGTGCCACGGAGGAGG
TTGAAAGAGGGAGGCGGGGAGGCGAGGGGCCGGTGTGTGTGTGTTGATTT
GAAGGATGGGAAGGTGCACGCGGCGGAGGCGGAGGGGACGTTGGTTGTCT
ACCCGGGCTGCGAGCCACAGAAGTCGATGTGTGCGTTTGAGTGAGAAGGG
GGAAGAGAGGAGGGAAGGAAGGGAGATGGGAGGGAGGAGAATGAATTATA
TACTGAAGAATGGGTTGATGATGGAGGGACAGGATTAGGAGGAGGGAAAG
GAGAGAAGACGATGAAGACGATGACGACAAAGAAGAAGAAGAATGCGAAT
AAGAAGGTTACCTCCCACTCGGCCACGCGATCCAGTATCAACTTTTACAT
TACTCGCGACAGATATGTTGTGTTGAAGCGCTTCAACTAGCTCCCTACCA
TGCAGGAGGACCGAAATGTTGCTTCGAAAGGGGCAGAGGTTGTACGCATT
AAATGAACACAGGAAGCGAGTTGACACACATGAGG
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protein sequence of NO20G00380.1

>NO20G00380.1-protein ID=NO20G00380.1-protein|Name=NO20G00380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=262bp
MRKRTAGQRGLDYMVLPTADELAAELREREKNKGPSPKEIVKYAFFGFVA
IILLMGMGWHLGQHQRRRNNGLSPTDLARARRAAHQAAFPQDPDKPSILS
LVQAEEDALPGVPRLFTFSELQQAKHDYLASSSPSSSSQPPIYLAIVGHV
FDVSKGDQFYAPPDEKEGGREGGGYGFFAFRDAARAYVTGDFSKEGLRED
VEGLKEEECRGVWRWVNFFKDKEEYPFVGRLVGMYFDADGRPTRSYLNFR
ACVGTGGGGRG*
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Synonyms
Publications