NO20G00360, NO20G00360 (gene) Nannochloropsis oceanica

Overview
NameNO20G00360
Unique NameNO20G00360
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1998
Alignment locationchr20:122229..124226 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:122229..124226 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO20G00360 vs. NCBI_GenBank
Match: EWM22162.1 (hypothetical protein Naga_100064g14 [Nannochloropsis gaditana])

HSP 1 Score: 189.9 bits (481), Expect = 2.400e-44
Identity = 219/589 (37.18%), Postives = 286/589 (48.56%), Query Frame = 0 
Query:    1 MDPRDKEIESLRAEIASLSRSGADAVHAYSRKKERCDELM-----------ESLIDLQARYDAVTAQTQTTNSESALSASTSSLEERIAELELALAAKDSLLQGLQAACAQKDAALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEANNTQHQQVMGLVEHAFQLLESHPPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNLTKCGTQVGTPAMEKYPEQHACSDATIQSLLEDLASVKDFAGLELAVTTEALQEMRQEGLEREKALSDEMGGMKEELGRVQAMMAAVRAEAEEQARRDSQAIQELEVTVQLTEGA--------XXXXXXXXXXXXXXXXXXPEGALSPASTARLQGVMAGLRSQLQDTEMRAQEAEVGRVRLMQELEGMEDRLGKAEESXXXXXXXXXXXXXXXXXXXXXXXXXXXMGGIHTPAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAALRRLQAELLQTKAQLDTANTNTTLLQRYIATRRLQ----------KTDTMTASVAAVNTSSP--GGSEEEGKEG-----PARAAAEPCASPASVLASSKSRGRLLFSPPS 554
            MD R++E+++LR E  SL RSGADA  AY R K+RCDELM                                S S    S+  +  R+ ELE ALAAKD +L+G+QAA  ++                                 +  +  + Q  +  V+ A +                                      ++ + GTQ+G       PE+      TIQSLL DL  +KDFAG EL ++ EA Q +++EG ++EK  +DE+  +K EL + QA +A++RAEA+EQA RD+  IQELEVTVQLTEGA        XXXXXXXXXXXX      P+GA SPA+T++L G++  LR QLQ T+ RA EAE  +  L+QE+  +EDRL +AE+                            +                      XXXXXXXXXXXXXXXXXXXX     ALRR+QAELLQTKAQLDTA TNT+LLQRYI +RRLQ           T++   S A V T+SP       EG +G     PA  A+ P  SP  +L   KS  +   SPP+
Sbjct:    1 MDHREEEMKALRNEAISLRRSGADAAAAYERSKKRCDELMXXXXXXXXXXXXXXXXXXXXXXXXXXNEPIFGSMSQSKGSSFDVYARMVELERALAAKDDILRGMQAANVKE-----------------ATETCVSVNEEMVDEGQAIDPEEFQDAVRPVDEALEGAAMRDVQPSSFGAQKADLKTTGTDDPSIDYTPPGAEESVIERGTQIGGGLSICTPEKQVLK-GTIQSLLYDLTFLKDFAGAELKISNEAFQAIQEEGAQKEKMHADEVRSLKAELAQTQATLASLRAEAQEQASRDNLTIQELEVTVQLTEGALRVAKXXXXXXXXXXXXXXXECVVSLPKGATSPAATSKLLGLVESLRYQLQKTQQRADEAEDRQGHLVQEMSELEDRLARAEQQLATTAAGALRGGMEGPLSAPEDLDPASLESKGRHHSSDDRSRAMDSSETEXXXXXXXXXXXXXXXXXXXXAKYPPALRRVQAELLQTKAQLDTAKTNTSLLQRYIVSRRLQTWDGVQKLLESTESQGTSHACV-TASPQMASGRFEGHKGVTPVLPAAGASRP--SPPPLLLPGKSEAKSFPSPPA 568
The following BLAST results are available for this feature:
BLAST of NO20G00360 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22162.12.400e-4437.18hypothetical protein Naga_100064g14 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL024nonsL024Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR068ngnoR068Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002606NSK002606Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G00360.1NO20G00360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594307gene_6247Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100064g14gene8288Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G00360.1NO20G00360.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G00360 ID=NO20G00360|Name=NO20G00360|organism=Nannochloropsis oceanica|type=gene|length=1998bp
ACAGACACTACACGCCGAGAAATGGACCCCCGGGACAAAGAAATCGAATC
GTTGCGTGCCGAGATAGCGTCCTTAAGTCGTTCCGGTGCCGATGCTGTCC
ATGCCTACAGCCGCAAGAAGGAACGCTGCGACGAACTCATGGAGTCGCTC
ATTGACCTCCAAGCGCGCTACGATGCCGTGACCGCCCAAACTCAGACCAC
CAATAGTGAGTCTGCTCTCTCTGCGTCGACGTCCTCCTTAGAAGAACGTA
TTGCAGAGCTGGAGCTGGCTCTGGCCGCCAAAGACAGCCTTCTCCAAGGA
TTGCAAGCGGCCTGCGCTCAGAAGGATGCTGCGCTCTTGGAGGCAATGCG
GAAGCAAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGATACGGAAAAAGATGGCAAAGAGGCCAACAACACACAGCACCAG
CAGGTCATGGGGCTTGTCGAGCATGCTTTTCAGCTTCTGGAGTCTCACCC
TCCCACGGCTACAGCGCAAGCAGTAGCAGCAGCGCCGTCCTCCCCCTCTC
TCTCCTCCTCCACCTCGACCATTACCGCCTCGACAAGCAATGATCTGAAC
TTGACCAAGTGCGGCACTCAAGTCGGAACGCCCGCCATGGAAAAATACCC
GGAGCAGCACGCTTGCTCGGATGCCACCATTCAATCCCTCCTTGAGGACC
TTGCTTCGGTGAAGGACTTCGCCGGCCTCGAACTCGCAGTCACGACGGAG
GCCCTCCAGGAAATGCGACAAGAAGGTTTGGAACGCGAAAAAGCACTGTC
GGATGAAATGGGAGGGATGAAGGAGGAGCTAGGGAGGGTACAAGCTATGA
TGGCAGCTGTAAGGGCGGAGGCGGAGGAACAGGCAAGGAGAGACAGCCAG
GCCATCCAAGAGTTGGAGGTTACTGTGCAGTTGACCGAAGGCGCCCTTCT
CCTCGCCAAACAACAAGAACAACAAGCAGCAGCAGCAGCGGCACTGCTAC
CGGAGGGTGCATTGAGCCCTGCGTCGACGGCGAGGCTACAGGGAGTGATG
GCTGGATTGCGTAGCCAGCTGCAAGATACAGAAATGAGGGCACAAGAAGC
AGAAGTGGGGCGAGTGAGATTGATGCAGGAACTGGAAGGGATGGAGGATC
GCTTGGGAAAAGCGGAGGAGAGCCTAGCGGCTGCTGCTGCTGCTGCTGTT
GCTGAATCTGCTCCTGTCGAAGAGCCCGAAACGACAGCAGCAGCAGAGGA
AGGGATGGGCGGCATTCACACCCCTGCAAAGGTGAAAGCCAGCACAACTT
CCACCGGCACCAGCATGACACCTCATACCCCTGTCCCTGCAGCAGCAGCT
GCTGCTGCTGCCCCTTCCTCATCCGCTGTTGCCATGCAGACCACTGCCGC
CCTCCGTCGTCTCCAAGCGGAGCTTCTTCAAACCAAAGCGCAGCTAGACA
CAGCCAACACCAACACCACGCTTCTACAACGTTACATCGCCACTCGTCGG
CTTCAGAAAACGGATACAATGACAGCATCAGTCGCGGCAGTTAATACTTC
CTCACCGGGAGGGAGTGAGGAGGAAGGTAAGGAGGGGCCAGCGAGAGCGG
CGGCTGAGCCGTGTGCTTCTCCTGCCTCGGTGTTGGCGTCCAGCAAGAGT
AGAGGACGTTTGCTCTTCTCTCCTCCTTCTTCCTCTCCCGCTGCGAGTGC
ATGTAGTGCCACCGCAACGATAGGTGGCGACAGGGTGACTGAAACGCCTT
CCCCCTCCTCTTCGTCCTTGTTTTCCTTCGAGAAGGCTGTCAACTTCTTC
TCCTTTGCTTCGTCTTCCACAGCGGCAGCAGCAGCAGCGGCAGTAGCAGC
CGCACCGGTGGGGGATGAGACACATGTGGGGATTTAAAGAGAGGTTTGCA
AGGAGGAGAAGAGGCGATGGTGACGTATGTACATTTTTGAAAAGGCAGGC
CGATGAGAAACAGAGAAGTGAGAATCGAATCGAAGAATGCGTTTAGAG
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protein sequence of NO20G00360.1

>NO20G00360.1-protein ID=NO20G00360.1-protein|Name=NO20G00360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=622bp
MDPRDKEIESLRAEIASLSRSGADAVHAYSRKKERCDELMESLIDLQARY
DAVTAQTQTTNSESALSASTSSLEERIAELELALAAKDSLLQGLQAACAQ
KDAALLEAMRKQEAAAAAAAAAAAAAAADTEKDGKEANNTQHQQVMGLVE
HAFQLLESHPPTATAQAVAAAPSSPSLSSSTSTITASTSNDLNLTKCGTQ
VGTPAMEKYPEQHACSDATIQSLLEDLASVKDFAGLELAVTTEALQEMRQ
EGLEREKALSDEMGGMKEELGRVQAMMAAVRAEAEEQARRDSQAIQELEV
TVQLTEGALLLAKQQEQQAAAAAALLPEGALSPASTARLQGVMAGLRSQL
QDTEMRAQEAEVGRVRLMQELEGMEDRLGKAEESLAAAAAAAVAESAPVE
EPETTAAAEEGMGGIHTPAKVKASTTSTGTSMTPHTPVPAAAAAAAAPSS
SAVAMQTTAALRRLQAELLQTKAQLDTANTNTTLLQRYIATRRLQKTDTM
TASVAAVNTSSPGGSEEEGKEGPARAAAEPCASPASVLASSKSRGRLLFS
PPSSSPAASACSATATIGGDRVTETPSPSSSSLFSFEKAVNFFSFASSST
AAAAAAAVAAAPVGDETHVGI*
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Synonyms
Publications