NO20G00300, NO20G00300 (gene) Nannochloropsis oceanica

Overview
NameNO20G00300
Unique NameNO20G00300
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2614
Alignment locationchr20:102486..105099 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:102486..105099 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO20G00300 vs. NCBI_GenBank
Match: EWM22205.1 (hypothetical protein Naga_100291g6 [Nannochloropsis gaditana])

HSP 1 Score: 305.8 bits (782), Expect = 1.300e-79
Identity = 162/280 (57.86%), Postives = 202/280 (72.14%), Query Frame = 0
Query:    1 MHASPLRPSSCLLVIILAFALVVLVQGQEKAHQNEKPTRPFSRLQS------TTGSGSKTDSAQLPGNQEAEFTKPTNRVGYLLNLTKNGLNPVQAFRDAMNTEGFKAILDNSEIQHRVLKELPLLGAIEGFSKIKDNRRLSAEDTKKSFATGMDNLLNLANDAFFNKVNDPAKVSETVAKMATSPDPSIQALFQRAQSGEKEAVEALQDEFTKRHYTGLDGKAFREISMEQTASKMEQLPEMMHFIEKDPSLAQVFKDLAGMKGGNFPPTEEAMMASTK 275
            M A+ L  S+ LLVI+  F    +      A ++++ +RPFSRLQS                          FTKP++R GYLLNLTKN  NPVQ F+DAMNT+GFKAILDN +IQHRVLK+ PLLGA+ GFS IKDNRRLSAE+TK SF+TGM+ LLNLA+DAFFNKVN+P KVS T+AKMA S DP IQ LF+RA++GE+ AVE LQDEF  +HY+G+DGKAFREIS +    K +Q+PEMMHFI+KD SLA+ F+DL+ M+  +FPPTEE MMA+ +
Sbjct:    1 MQAASLYSSTVLLVILAVFMGCTV-----HAQEHDRSSRPFSRLQSXXXXXXXXXXXXXXXXXXXXXXXXXXFTKPSSRAGYLLNLTKNTFNPVQVFKDAMNTKGFKAILDNPDIQHRVLKDFPLLGALTGFSTIKDNRRLSAEETKNSFSTGMNTLLNLADDAFFNKVNEPDKVSATLAKMAASSDPGIQNLFKRARAGEQGAVEELQDEFVNQHYSGMDGKAFREISKQHNGDKFKQMPEMMHFIQKDASLAKAFEDLSRMRDSDFPPTEEEMMATVE 275          
BLAST of NO20G00300 vs. NCBI_GenBank
Match: XP_005854196.1 (hypothetical protein NGA_0186800 [Nannochloropsis gaditana CCMP526] >EKU22160.1 hypothetical protein NGA_0186800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 286.6 bits (732), Expect = 8.300e-74
Identity = 158/302 (52.32%), Postives = 200/302 (66.23%), Query Frame = 0
Query:    9 SSCLLVIILAFALVVLVQGQEKAHQNEKPTRPFSRLQS------TTGSGSKTDSAQLPGNQEAEFTKPTNRVGYLLNLTKNGLNPVQAFRDAMNTEGFKAILDNSEIQHRVLKELPLLGAIEGFSKIKDNRRLSAED------------------------------TKKSFATGMDNLLNLANDAFFNKVNDPAKVSETVAKMATSPDPSIQALFQRAQSGEKEAVEALQDEFTKRHYTGLDGKAFREISMEQTASKMEQLPEMMHFIEKDPSLAQVFKDLAGMKGGNFPPTEEAMMASTK 275
            SS +L+++LA  +   V  QE    +++ +RPFSRLQS                          FTKP++R GYLLNLTKN  NPVQ F+DAMNT+GFKAILDN +IQHRVLK+ PLLGA+ GFS IKDNRRLSAE+                              TK SF+TGM+ LLNLA+DAFFNKVN+P KVS T+AKMA S DP IQ LF+RA++GE+ AVE LQDEF  +HY+G+DGKAFREI+ +    K +Q+PEMMHFI+KD SLA+ F+DL+ M+  +FPPTE+ MMA+ +
Sbjct:    8 SSTVLLVVLAVFMGCTVHAQE----HDRSSRPFSRLQSXXXXXXXXXXXXXXXXXXXXXXXXXXFTKPSSRAGYLLNLTKNTFNPVQVFKDAMNTKGFKAILDNPDIQHRVLKDFPLLGALTGFSTIKDNRRLSAEEVRWQIRGKRRRKREGNLIYGRGNDETLNAQTKNSFSTGMNTLLNLADDAFFNKVNEPDKVSATLAKMAASSDPGIQNLFKRARAGEQGAVEELQDEFVNQHYSGMDGKAFREITKQHNGDKFKQMPEMMHFIQKDASLAKAFEDLSRMRDSDFPPTEKEMMATVE 305          
BLAST of NO20G00300 vs. NCBI_GenBank
Match: EWM25436.1 (hypothetical protein Naga_100005g87 [Nannochloropsis gaditana])

HSP 1 Score: 164.1 bits (414), Expect = 6.200e-37
Identity = 93/250 (37.20%), Postives = 143/250 (57.20%), Query Frame = 0
Query:   34 NEKPTRPFSRLQSTTGSGSKTDSAQLPGNQEA-------------------------------EFTKPTNRVGYLLNLTKNGLNPVQAFRDAMNTEGFKAILDNSEIQHRVLKELPLLGAIEGFSKIKDNRRLSAEDTKKSFATGMDNLLNLANDAFFNKVNDPAKVSETVAKMATSPDPSIQALFQRAQSGEKEAVEALQDEFTKRHYTGLDGKAFREISMEQTASKMEQLPEMMHFIEKDPSLAQVFK 253
            N+K  RPF+RLQSTTG+   T   QL  N++                                +  +P ++V +L  + K  ++P++ F   + ++ F+A+L N EIQHR+LKE+PLL A +GF +I   RRLSA +T + FA G+ N+++ A  AF  KV DP + + T+AKMA  P+P+IQ+LF+RAQ G+  AVE LQD F   H+ G+D +  RE+    T  K+  +PE+M FI+++   +  F+
Sbjct:   53 NDK-ARPFTRLQSTTGNVVDTHGQQLDHNEQQRNQETLDDRNGKERQQAKRKRRLQQAASGFDQPLRPNDKVAFLQKIAKGNVDPLELFTRGVKSKAFQAVLKNVEIQHRILKEMPLLAAFDGFRQI-TGRRLSARETMEGFAIGVQNVIDFAKVAFI-KVKDPQQTAATIAKMAADPNPAIQSLFRRAQEGDPAAVEELQDVFNDLHFPGVDMRVLREVRRNHTFEKLLSMPEIMRFIDRNEFASNFFR 299          
BLAST of NO20G00300 vs. NCBI_GenBank
Match: EWM23494.1 (hypothetical protein Naga_100198g11 [Nannochloropsis gaditana])

HSP 1 Score: 110.9 bits (276), Expect = 6.200e-21
Identity = 56/177 (31.64%), Postives = 110/177 (62.15%), Query Frame = 0
Query:   76 YLLNLTKNGLNPVQAFRDAMNTEGFKAILDNSEIQHRVLKELPLLGAIEGFSKIKDNRRLSAEDTKKSFATGMDNLLNLANDAFFNKVNDPAKVSETVAKMATSPDPSIQALFQRAQSGEKEAVEALQDEFTKRHYTGLDGKAFREISMEQTASKMEQLPEMMHFIEKDPSLAQVFK 253
            +   + K+G++ V+ F     ++ F++IL+N EIQHR+++ +P+LGA+ GF + +  RRL+ ++T   F+ G+ NLL +   +  + +N P  ++E +A+++ S DP IQ LF+ A   ++ +V  L++   +  Y G+D +  +++    T  K+  +PEM  FI++DP +++VF+
Sbjct:  134 FFQKVKKDGIDSVELFETLFKSKAFESILENVEIQHRIIEGVPILGAVSGFREAR-GRRLTDQETTAGFSKGVRNLLEMFKTSAKHALN-PTLMNERIAELSKSDDPEIQDLFKGASENDEASVLELKNLAARDLYPGVDLEILQDVMNSLTFDKLLDIPEMARFIDQDPYISRVFR 308          
BLAST of NO20G00300 vs. NCBI_GenBank
Match: XP_005853961.1 (hypothetical protein NGA_0461700 [Nannochloropsis gaditana CCMP526] >EKU22395.1 hypothetical protein NGA_0461700 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 90.1 bits (222), Expect = 1.100e-14
Identity = 61/210 (29.05%), Postives = 104/210 (49.52%), Query Frame = 0
Query:   40 PFSRLQSTTG--SGSKTDSAQ--LPGNQEAEFTKPTNRVGYLLNLTKNGLNPVQAFRDAMNTEGFKAILDNSEIQHRVLKELPLLGAIEGFSKIKDNRRLSAEDTKKSFATGMDNLLNLANDAFFNKVNDPAKVSETVAKMATSPDPSIQALFQRAQSGEKEAVEALQDEFTKRHYTGLDGKAFREISMEQTASKMEQLPEMMHFIEKDP 246
            P  R+QS TG  SG+  D  +  LP        KP   +  + +  KNGL+ ++ F  +  + G KAILD+ E QH++++ LPLL A +GF +I   RRL    T   F  G++++L    D     + DP+  +  ++++      +I   F  A +G+  A++ + +   K+ Y G++    + +S     SK+    E+M  I  DP
Sbjct:   25 PMRRMQSLTGVLSGAAKDVMEDTLPA------YKPDGELTMMQDTWKNGLDIMKLFETSFASPGMKAILDDVETQHKIMENLPLLAAFDGFKEI-TGRRLDDAGTTAGFTAGLNSILKTLPD-MLKTMKDPSISTRALSELLAEDANNISEAFAAASAGDGGAMDTVNEALNKKLYPGVNTDVLKTVSASDPLSKVTGNNEIMRLINDDP 226          
BLAST of NO20G00300 vs. NCBI_GenBank
Match: EWM24107.1 (hypothetical protein Naga_100286g4 [Nannochloropsis gaditana])

HSP 1 Score: 89.4 bits (220), Expect = 1.900e-14
Identity = 61/210 (29.05%), Postives = 104/210 (49.52%), Query Frame = 0
Query:   40 PFSRLQSTTG--SGSKTDSAQ--LPGNQEAEFTKPTNRVGYLLNLTKNGLNPVQAFRDAMNTEGFKAILDNSEIQHRVLKELPLLGAIEGFSKIKDNRRLSAEDTKKSFATGMDNLLNLANDAFFNKVNDPAKVSETVAKMATSPDPSIQALFQRAQSGEKEAVEALQDEFTKRHYTGLDGKAFREISMEQTASKMEQLPEMMHFIEKDP 246
            P  R+QS TG  SG+  D  +  LP        KP   +  + +  KNGL+ ++ F  +  + G KAILD+ E QH++++ LPLL A +GF +I   RRL    T   F  G++++L    D     + DP+  +  ++++      +I   F  A +G+  A++ + +   K+ Y G++    + +S     SK+    E+M  I  DP
Sbjct:   25 PMRRMQSLTGVLSGAAKDVMEDTLPA------YKPDAELTMMQDTWKNGLDIMKLFETSFASPGMKAILDDVETQHKIMENLPLLAAFDGFKEI-TGRRLDDAGTTAGFTAGLNSILKTLPD-MLKTMKDPSISTRALSELLAEDANNISEAFAAASAGDGGAMDTVNEALNKKLYPGVNTDVLKTVSASDPLSKVTGNNEIMRLINDDP 226          
BLAST of NO20G00300 vs. NCBI_GenBank
Match: XP_005854240.1 (hypothetical protein NGA_0024302 [Nannochloropsis gaditana CCMP526] >EKU22120.1 hypothetical protein NGA_0024302 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 65.1 bits (157), Expect = 3.900e-7
Identity = 28/79 (35.44%), Postives = 53/79 (67.09%), Query Frame = 0
Query:   76 YLLNLTKNGLNPVQAFRDAMNTEGFKAILDNSEIQHRVLKELPLLGAIEGFSKIKDNRRLSAEDTKKSFATGMDNLLNL 155
            +   + K+G++ V+ F     ++ F++IL+N EIQHR+++ +P+LGA+ GF + +  RRL+ ++T   F+ G+ NLL +
Sbjct:   80 FFQKVKKDGIDSVELFETLFKSKAFESILENVEIQHRIIEGVPILGAVSGFREAR-GRRLTDQETTAGFSKGVRNLLEM 157          
The following BLAST results are available for this feature:
BLAST of NO20G00300 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 7
Match NameE-valueIdentityDescription
EWM22205.11.300e-7957.86hypothetical protein Naga_100291g6 [Nannochloropsi... [more]
XP_005854196.18.300e-7452.32hypothetical protein NGA_0186800 [Nannochloropsis ... [more]
EWM25436.16.200e-3737.20hypothetical protein Naga_100005g87 [Nannochlorops... [more]
EWM23494.16.200e-2131.64hypothetical protein Naga_100198g11 [Nannochlorops... [more]
XP_005853961.11.100e-1429.05hypothetical protein NGA_0461700 [Nannochloropsis ... [more]
EWM24107.11.900e-1429.05hypothetical protein Naga_100286g4 [Nannochloropsi... [more]
XP_005854240.13.900e-735.44hypothetical protein NGA_0024302 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002552NSK002552Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G00300.1NO20G00300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO20G00300.2NO20G00300.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566998gene_6238Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100291g6gene8234Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G00300.1NO20G00300.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO20G00300.2NO20G00300.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G00300 ID=NO20G00300|Name=NO20G00300|organism=Nannochloropsis oceanica|type=gene|length=2614bp
CACCACGTGACTGCGCGAGACCGACTGAGACTTGATTATATTTCCTTGTC
TCTTTGGATTCGTGTCTTTGTCGTGGACATGTGCGATGTTGCCTTATCGT
GTACGACCCTTCGCTGATGAAGTGGGGTTGGCGAGACGGGCCGAGCATAT
TCAATTTTCCCCTTTGGAAAACCGCGGAGCCTCGAGAGGGGTACACCTTG
TGCAGCAGTTCCGACGGCGCGGTGCCCTGTGTGTCTTGTGGCATGTTCTT
GCATATCGCAGGCATAGGCGACGGGTCTATGTGTGTATGTTATGTGTCCT
TGTGGAGGCCCAGAAGTTGTAGTAATGTGGACGGTGTAATGGAGACTCAG
AATCCCCCATACTCACGGCGCTCCCCTTCCTCCCCTTGCACCCCCCCGTT
AAAGCATGCATGCCTCTCCTTTACGACCGTCCTCCTGTCTCCTTGTCATC
ATCCTAGCATTCGCCCTTGTGGTTCTTGTCCAGGGACAGGAGAAAGCCCA
CCAGAATGAGAAGCCCACTCGGCCCTTCAGTCGTCTGCAGTCCACCACGG
GCAGCGGTAGCAAAACTGACTCTGCACAGTTGCCGGGCAATCAGGAAGgt
gagcgtgaaggatagtacattcgtagtggattcgaagcacggagggtata
gatacataaagtatgtggatgacttgcggcaagtcgcataggtgcacagc
cgcacagccctcccttgtccccttgctgccctccggcttatgtcgcgtcg
cacacaaagcaaccgtatttccccgccccccattcacacctcatcccctt
tacgcaaacgacagCTGAATTTACCAAGCCCACGAACCGCGTCGGCTACC
TCCTAAACCTCACCAAGAACGGGCTCAACCCTGTGCAAGCTTTCCGCGAT
GCCATGAACACTGAGGgtacgcttaaaagaagaaagggcggggagataga
cgggcgaggaagcatgttgtaagctttatagtttcacaagagaggggaag
aaacaggaattgaagatgacaacaagaggatttgagttacgcaggcggac
cgaggaagaagacacgacaccgagcctctccttacattccctctatcccc
tcccttcctcccttccttccccaattcccccaccctcctaagGATTCAAG
GCAATTTTGGATAACTCAGAGATCCAGCACCGCGTCCTGAAGGAGCTGCC
TCTTTTGGGTGCCATCGAGGGTTTCAGCAAGATCAAGGACAACCGCCGGT
TGAGCGCGGAGGATgtaaggaggtttggggataaagagacagtaaataaa
tttcgttgcatgttcccttacgttgctctatacattcacccgcagACCAA
GAAGAGCTTCGCTACGGGGATGGATAACCTGCTGAACCTGGCCAACGATG
CCTTCTTCAATAAGgtaaacagaagattcccagccatattctcaaagtat
tctccattcattgcctactaaatgcccgattctaatctatttgtcagcac
acatttacattaccactgtttgaccactccctcctgcccttcctttcttc
tcagGTAAACGACCCTGCCAAGGTTTCGGAGACGGTCGCCAAGATGGCCA
CATCACCAGATCCTTCGATTCAGgtaggaaaaggggaggcccagaaagag
ggtgagaaggaaggcagtatctccgtcctgcttggtccaactcttttttc
tttcactgacttctcacgacacgttcgttatttctgtccctctcccttcc
tctttctttcacaacacacgcagGCCCTTTTCCAACGGGCGCAATCTGGC
GAGAAGGAAGCCGTGGAGGCCCTACAGGACGAGTTCACGAAGCGGCACTA
CACTGgtacgtccactttccctgtctcctttcctttactgtcgagtatgc
gataagtgttgtcaaatttgcttaccgcccccttccccctcccctcctct
ctcctcccttctctccccctagGCCTGGATGGAAAGGCGTTTCGGGAAAT
ATCCATGGAGCAGACTGCGAGCAAGATGGAGCAGTTGCCGGAGATGATGC
ACTTTATTGAAAAGGACCCCAGCCTGGCACAGGTTTTCAAAGACCgtgag
ttgaaaagatagcgagcaagagaggggggaataggacagtaaagctgatg
tagacaatttttaacgcttatttatacgcttgctactatatatatacacg
cacacacactcacacacacgcacacgcactcacacacacagTGGCGGGCA
TGAAGGGGGGGAACTTCCCGCCCACTGAGGAAGCCATGATGGCATCGACA
AAATAATAGTTGGACGATGAGGGGCGAGATGGCGAGCAAGGAAAGATGTC
GAGAAATAAGAGGTGCAAAGCCTAAAGTAATACGAGCGTGTGGGAGACAG
GATGAAGGAAAAGAAACGAGATGATgtgagtgcatatgttgattacgaag
aagtaatctaaaagcgagaattaagccgatatcagcacgtttgacacaaa
tgggagaattcatctttgccaagttttgttactaacgttttatgactacg
cggaaataacggcatattcttatcacagCACAACGAACTCAACTACTACA
TGCGAATCCGTGCG
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protein sequence of NO20G00300.1

>NO20G00300.1-protein ID=NO20G00300.1-protein|Name=NO20G00300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=275bp
MHASPLRPSSCLLVIILAFALVVLVQGQEKAHQNEKPTRPFSRLQSTTGS
GSKTDSAQLPGNQEAEFTKPTNRVGYLLNLTKNGLNPVQAFRDAMNTEGF
KAILDNSEIQHRVLKELPLLGAIEGFSKIKDNRRLSAEDTKKSFATGMDN
LLNLANDAFFNKVNDPAKVSETVAKMATSPDPSIQALFQRAQSGEKEAVE
ALQDEFTKRHYTGLDGKAFREISMEQTASKMEQLPEMMHFIEKDPSLAQV
FKDLAGMKGGNFPPTEEAMMASTK*
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protein sequence of NO20G00300.2

>NO20G00300.2-protein ID=NO20G00300.2-protein|Name=NO20G00300.2|organism=Nannochloropsis oceanica|type=polypeptide|length=275bp
MHASPLRPSSCLLVIILAFALVVLVQGQEKAHQNEKPTRPFSRLQSTTGS
GSKTDSAQLPGNQEAEFTKPTNRVGYLLNLTKNGLNPVQAFRDAMNTEGF
KAILDNSEIQHRVLKELPLLGAIEGFSKIKDNRRLSAEDTKKSFATGMDN
LLNLANDAFFNKVNDPAKVSETVAKMATSPDPSIQALFQRAQSGEKEAVE
ALQDEFTKRHYTGLDGKAFREISMEQTASKMEQLPEMMHFIEKDPSLAQV
FKDLAGMKGGNFPPTEEAMMASTK*
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Synonyms
Publications