NO20G00230, NO20G00230 (gene) Nannochloropsis oceanica

Overview
NameNO20G00230
Unique NameNO20G00230
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2979
Alignment locationchr20:77296..80274 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:77296..80274 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO20G00230 vs. NCBI_GenBank
Match: EWM22213.1 (hypothetical protein Naga_100337g2 [Nannochloropsis gaditana])

HSP 1 Score: 238.8 bits (608), Expect = 2.400e-59
Identity = 142/170 (83.53%), Postives = 153/170 (90.00%), Query Frame = 0 
Query:    1 MADALTDDKHKKKLSRKERERELRALSSDGTGCGFKKDLVADRHLDDQRYERELAFKXXXXXXXXXXXXXXXXXXXXGVMI-----GAPPPSAAFDTLLRMEAGLGQRTIHDSINDPNRPTWEDYKKAKADKLDLTGADDRKMIEYRAQLDAERARRLAQNRGEKVDEKG 166
            MAD  +++K KKKLSRKERERELRAL+SDG GCGFKKDLVADRHLDDQRYERE+AFKXXXXXXXXXXXXXXXXX   G MI     GAPPPSAAFD L+RMEAGLGQRTIHD+INDPNRP+WEDYKKAKADKLDL GAD+RKMIEYRAQLDAERARRLAQNRGEK ++ G
Sbjct:    1 MADTTSEEK-KKKLSRKERERELRALTSDGRGCGFKKDLVADRHLDDQRYEREIAFKXXXXXXXXXXXXXXXXXDKAGAMIPGVTLGAPPPSAAFDALIRMEAGLGQRTIHDNINDPNRPSWEDYKKAKADKLDLVGADERKMIEYRAQLDAERARRLAQNRGEKEEKDG 169
[Close]
BLAST of NO20G00230 vs. NCBI_GenBank
Match: EWM22214.1 (hypothetical protein Naga_100337g2 [Nannochloropsis gaditana])

HSP 1 Score: 238.8 bits (608), Expect = 2.400e-59
Identity = 142/170 (83.53%), Postives = 153/170 (90.00%), Query Frame = 0 
Query:    1 MADALTDDKHKKKLSRKERERELRALSSDGTGCGFKKDLVADRHLDDQRYERELAFKXXXXXXXXXXXXXXXXXXXXGVMI-----GAPPPSAAFDTLLRMEAGLGQRTIHDSINDPNRPTWEDYKKAKADKLDLTGADDRKMIEYRAQLDAERARRLAQNRGEKVDEKG 166
            MAD  +++K KKKLSRKERERELRAL+SDG GCGFKKDLVADRHLDDQRYERE+AFKXXXXXXXXXXXXXXXXX   G MI     GAPPPSAAFD L+RMEAGLGQRTIHD+INDPNRP+WEDYKKAKADKLDL GAD+RKMIEYRAQLDAERARRLAQNRGEK ++ G
Sbjct:    1 MADTTSEEK-KKKLSRKERERELRALTSDGRGCGFKKDLVADRHLDDQRYEREIAFKXXXXXXXXXXXXXXXXXDKAGAMIPGVTLGAPPPSAAFDALIRMEAGLGQRTIHDNINDPNRPSWEDYKKAKADKLDLAGADERKMIEYRAQLDAERARRLAQNRGEKEEKDG 169
[Close]
BLAST of NO20G00230 vs. NCBI_GenBank
Match: XP_005852788.1 (hypothetical protein NGA_0679400, partial [Nannochloropsis gaditana CCMP526] >EKU23043.1 hypothetical protein NGA_0679400, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 237.3 bits (604), Expect = 7.100e-59
Identity = 137/170 (80.59%), Postives = 149/170 (87.65%), Query Frame = 0 
Query:    1 MADALTDDKHKKKLSRKERERELRALSSDGTGCGFKKDLVADRHLDDQRYERELAFK-----XXXXXXXXXXXXXXXXXXXXGVMIGAPPPSAAFDTLLRMEAGLGQRTIHDSINDPNRPTWEDYKKAKADKLDLTGADDRKMIEYRAQLDAERARRLAQNRGEKVDEKG 166
            MAD  +++K KKKLSRKERERELRAL+SDG GCGFKKDLVADRHLDDQRYERE+AFK     XXXXXXXXXXXXX       GV +GAPPPSAAFD L+RMEAGLGQRTIHD+INDPNRP+WEDYKKAKADKLDL GAD+RKMIEYRAQLDAERARRLAQNRGEK ++ G
Sbjct:   49 MADTTSEEK-KKKLSRKERERELRALTSDGRGCGFKKDLVADRHLDDQRYEREIAFKXXXXXXXXXXXXXXXXXXKAGAVIPGVTLGAPPPSAAFDALIRMEAGLGQRTIHDNINDPNRPSWEDYKKAKADKLDLAGADERKMIEYRAQLDAERARRLAQNRGEKEEKDG 217
[Close]
BLAST of NO20G00230 vs. NCBI_GenBank
Match: XP_005853934.1 (hypothetical protein NGA_0461100, partial [Nannochloropsis gaditana CCMP526] >EKU22423.1 hypothetical protein NGA_0461100, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 183.0 bits (463), Expect = 1.600e-42
Identity = 108/135 (80.00%), Postives = 117/135 (86.67%), Query Frame = 0 
Query:    1 MADALTDDKHKKKLSRKERERELRALSSDGTGCGFKKDLVADRHLDDQRYERELAFK-----XXXXXXXXXXXXXXXXXXXXGVMIGAPPPSAAFDTLLRMEAGLGQRTIHDSINDPNRPTWEDYKKAKADKLDL 131
            MAD  +++K KKKLSRKERERELRAL+SDG GCGFKKDLVADRHLDDQRYERE+AFK     XXXXXXXXXXXXX       GV +GAPPPSAAFD L+RMEAGLGQRTIHD+INDPNRP+WEDYKKAKADKLDL
Sbjct:   49 MADTTSEEK-KKKLSRKERERELRALTSDGRGCGFKKDLVADRHLDDQRYEREIAFKXXXXXXXXXXXXXXXXXXKAGAVIPGVTLGAPPPSAAFDALIRMEAGLGQRTIHDNINDPNRPSWEDYKKAKADKLDL 182
[Close]
BLAST of NO20G00230 vs. NCBI_GenBank
Match: CBJ31202.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 115.2 bits (287), Expect = 4.100e-22
Identity = 68/148 (45.95%), Postives = 84/148 (56.76%), Query Frame = 0 
Query:   12 KKLSRKERERELRALSSDGTGCGFKKDL--VADRHLDDQRYERELAFKXXXXXXXXXXXXXXXXXXXXGVMIGAPPPSAAFDTLLRMEAGLGQRTIHDSINDPNRPTWEDYKKAKADKLDLTGADDRKMIEYRAQLDAERARRLAQNR 158
            KK SRKER+RELR L  D +G     D   V +RH+DD+R+EREL  K                            PSA +D  +RM+ G   RTI D INDPNR +WE ++K  ADKLD+ GAD +KM+EYRAQLD ER   LA+ R
Sbjct:    5 KKKSRKERQRELRMLEKDISGGKSVIDYGKVNERHMDDKRFERELKHKEVLQKQADQGASKE----------SEQAPSATYDAFMRMQTGQETRTIADKINDPNRVSWEQFRKDNADKLDIPGADRKKMVEYRAQLDKERESALAKGR 142
[Close]
BLAST of NO20G00230 vs. NCBI_GenBank
Match: POM57970.1 (hypothetical protein PHPALM_37449 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 90.5 bits (223), Expect = 1.100e-14
Identity = 49/115 (42.61%), Postives = 62/115 (53.91%), Query Frame = 0 
Query:   40 VADRHLDDQRYERELAFKXXXXXXXXXXXXXXXXXXXXGVMIGAPPPSAAFDTLLRMEAGLGQRTIHDSINDPNRPTWEDYKKAKADKLDLTGADDRKMIEYRAQLDAERARRLA 155
            V DR +DD R+ER+ A +                           P SA  D  +RM  G  +RTI D I+DPNRPTWE YKK  ADKLDL G  +++M EYR +LDA R ++LA
Sbjct:   22 VRDRQVDDDRFERQRAIRAATAAPPPIEQSKHVGAQ------ATAPQSATMDAFMRMMTGKEERTIADRISDPNRPTWEQYKKENADKLDLNGNGEKEMKEYRKKLDAAREKKLA 130
[Close]
BLAST of NO20G00230 vs. NCBI_GenBank
Match: ETI31172.1 (hypothetical protein F443_21812 [Phytophthora parasitica P1569])

HSP 1 Score: 87.4 bits (215), Expect = 9.100e-14
Identity = 47/108 (43.52%), Postives = 59/108 (54.63%), Query Frame = 0 
Query:   40 VADRHLDDQRYERELAFKXXXXXXXXXXXXXXXXXXXXGVMIGAPPPSAAFDTLLRMEAGLGQRTIHDSINDPNRPTWEDYKKAKADKLDLTGADDRKMIEYRAQLDA 148
            V DR +DD R+ER+ A +                         A P SA  D  +RM  G  +RTI D I+DPNRPTWE YKK  ADKLDL+G  +++M EYR +LDA
Sbjct:   20 VLDRQIDDNRFERQRAIRVASSAPPAEQPKHAGAK-------AAAPQSATMDAFMRMMTGKEERTIADRISDPNRPTWEQYKKENADKLDLSGNGEKEMKEYRKKLDA 120
[Close]
BLAST of NO20G00230 vs. NCBI_GenBank
Match: ETK71575.1 (hypothetical protein L915_21206 [Phytophthora parasitica] >ETL25012.1 hypothetical protein L916_21074 [Phytophthora parasitica])

HSP 1 Score: 87.4 bits (215), Expect = 9.100e-14
Identity = 47/108 (43.52%), Postives = 59/108 (54.63%), Query Frame = 0 
Query:   40 VADRHLDDQRYERELAFKXXXXXXXXXXXXXXXXXXXXGVMIGAPPPSAAFDTLLRMEAGLGQRTIHDSINDPNRPTWEDYKKAKADKLDLTGADDRKMIEYRAQLDA 148
            V DR +DD R+ER+ A +                         A P SA  D  +RM  G  +RTI D I+DPNRPTWE YKK  ADKLDL+G  +++M EYR +LDA
Sbjct:   20 VLDRQIDDNRFERQRAIRAASSAPPAEQPKHAGAK-------AAAPQSATMDAFMRMMTGKEERTIADRISDPNRPTWEQYKKENADKLDLSGNGEKEMKEYRKKLDA 120
[Close]
BLAST of NO20G00230 vs. NCBI_GenBank
Match: ETL78227.1 (hypothetical protein L917_20930 [Phytophthora parasitica] >ETM31488.1 hypothetical protein L914_20947 [Phytophthora parasitica] >ETO59889.1 hypothetical protein F444_21835 [Phytophthora parasitica P1976] >ETP00988.1 hypothetical protein F441_21693 [Phytophthora parasitica CJ01A1] >ETP29130.1 hypothetical protein F442_21672 [Phytophthora parasitica P10297])

HSP 1 Score: 87.4 bits (215), Expect = 9.100e-14
Identity = 47/108 (43.52%), Postives = 59/108 (54.63%), Query Frame = 0 
Query:   40 VADRHLDDQRYERELAFKXXXXXXXXXXXXXXXXXXXXGVMIGAPPPSAAFDTLLRMEAGLGQRTIHDSINDPNRPTWEDYKKAKADKLDLTGADDRKMIEYRAQLDA 148
            V DR +DD R+ER+ A +                         A P SA  D  +RM  G  +RTI D I+DPNRPTWE YKK  ADKLDL+G  +++M EYR +LDA
Sbjct:   20 VLDRQIDDNRFERQRAIRAASSAPPAEQPKHAGAK-------AAAPQSATMDAFMRMMTGKEERTIADRISDPNRPTWEQYKKENADKLDLSGNGEKEMKEYRKKLDA 120
[Close]
BLAST of NO20G00230 vs. NCBI_GenBank
Match: XP_008898683.1 (hypothetical protein PPTG_06510 [Phytophthora parasitica INRA-310] >ETN16349.1 hypothetical protein PPTG_06510 [Phytophthora parasitica INRA-310])

HSP 1 Score: 87.4 bits (215), Expect = 9.100e-14
Identity = 47/108 (43.52%), Postives = 59/108 (54.63%), Query Frame = 0 
Query:   40 VADRHLDDQRYERELAFKXXXXXXXXXXXXXXXXXXXXGVMIGAPPPSAAFDTLLRMEAGLGQRTIHDSINDPNRPTWEDYKKAKADKLDLTGADDRKMIEYRAQLDA 148
            V DR +DD R+ER+ A +                         A P SA  D  +RM  G  +RTI D I+DPNRPTWE YKK  ADKLDL+G  +++M EYR +LDA
Sbjct:   20 VLDRQIDDNRFERQRAIRVASSAPPAEQPKHAGAK-------AAAPQSATMDAFMRMMTGKEERTIADRISDPNRPTWEQYKKENADKLDLSGNGEKEMKEYRKKLDA 120
The following BLAST results are available for this feature:
BLAST of NO20G00230 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22213.12.400e-5983.53hypothetical protein Naga_100337g2 [Nannochloropsi... [more]
EWM22214.12.400e-5983.53hypothetical protein Naga_100337g2 [Nannochloropsi... [more]
XP_005852788.17.100e-5980.59hypothetical protein NGA_0679400, partial [Nannoch... [more]
XP_005853934.11.600e-4280.00hypothetical protein NGA_0461100, partial [Nannoch... [more]
CBJ31202.14.100e-2245.95conserved unknown protein [Ectocarpus siliculosus][more]
POM57970.11.100e-1442.61hypothetical protein PHPALM_37449 [Phytophthora pa... [more]
ETI31172.19.100e-1443.52hypothetical protein F443_21812 [Phytophthora para... [more]
ETK71575.19.100e-1443.52hypothetical protein L915_21206 [Phytophthora para... [more]
ETL78227.19.100e-1443.52hypothetical protein L917_20930 [Phytophthora para... [more]
XP_008898683.19.100e-1443.52hypothetical protein PPTG_06510 [Phytophthora para... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002547NSK002547Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G00230.1NO20G00230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|631409gene_6233Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100337g2gene8228Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G00230.1NO20G00230.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G00230 ID=NO20G00230|Name=NO20G00230|organism=Nannochloropsis oceanica|type=gene|length=2979bp
TTATCTTCCGCCGTCAAATTATTCCGCGAAAACATTTCACGGCCTCATTT
CACGGCCTGAATCCTCCCCCTTTCATCCGCATGTTCAGGCCGCCAGTGCT
TCCACAGCTTGATTACACGGCCTCTTGTCAGGCCACACCCATACTACACG
CAACAAGACAGAAAGCAACATGACAACGCTTGAAGACTCTTCCCCTTCCT
CCTCCACCTCCTCCTCCGCCTTTCTCTCCTGGTGTGGGTGGTTTGTGGCA
GATTTTTTACCCTACCCACCTCTCAGGCTGTAGGAAAAAAGAGAACGAAA
AGGACTTCAAGAACGTATATATCACTGCTTCTATTTTGCTCAACAAGTTT
ATTTGCTACTACTTCATGATGCCTGCCAATGCAGCTTTCTCCACCTTCCT
TGATGTACATACTTACTGGCCCTGATCATTCAGATCTTCAACAGAAATCA
ATTCTCTGTAGAGCTTGATTCACCGGTATGCTTGCGGTAATACAGATAAT
CACTACTTGCGCCTTACTCCGTTCACATATAAGACGTGCCTCTTCTTCAC
CAATTACAGACCAGCACTGATTTGGAGTTTCTTCGTCATCCGCAACCTCC
CGCACATGGCCTTACTTCCGTCACAAGCTGTGATATGTTCAAGCTATAGC
GATGAACATCACCATGAATGTCCTAAGTAGTAGGGGAAAATGGCTTTAGC
TCGATCCATTTTTCCGTTTCCCCCGCGCCACCTGCTCGCAAAAATCATAC
TCCATCCCTGTTTGTTCTTTTCATTTTTTGTGGATTTTAATCACCATTAC
GTACTTTGCCACGAGCATGATGGTATCTACCTCTATCATATGAAGAGCAT
CAAAATAAGCCACGGATGGTTTCCGGGTAATCGACAATTTCCTTGATGAA
GCACTTTCGCGTAGTGTTCATGCTGCACACTACTTTTCCCTCGTTGTAGT
GTATTTGAGCTTCGAGTGATGGATGCTTGTCAAAATTACTTCGCCCCCCT
CAACAGATGCCATGGACTCGACCGGAACCAGAGTGTCCATGGGGCTGACA
CCAAGGATTCGAGCAGCGGAATCGACTGATGCCACGAGGGAGTCCGGCAC
AATTGATGCTAAGCCATTCAGGATCACAATTGTGTTTTCGACGCAAATTC
TAATTATCTGTGATAGGCATTGATTTTCCGATGGCTTTCCAGCGCAGCGC
TACTTGATACTTTGGTTCTCCTCGATTATTTTCTCTGTCGATCCCCTGAT
TTCGAACACAGGTCCTGAACTTGGATGAGTTCAGCGATTCCCTCGGAGTC
ACTCCAGGCCTTCCCTGAGGGCATGCGGCAGGGTACCCGGCTTTTGCCTC
ACCGCCTGCCCTTATCGTCTCATGTGCTGAGTGACACATTGGTTCGCTTG
GCATACACAAATATTTAGgtacatcaaggaaagggctttccagctacggg
atagcgcatgcgcgtgtgggggaagggggggaaaaagtaaatgcaacggt
tgctagctagcctctgccctcatttctcctgaaatgcgtatctcgcagcg
cactcacgccacacctccttttttacaaaactcacgtccacacagTCAAG
GATTCGACCAGCACGCAGTAGAGGAGCAGCCAAAGGCAGCTGCGAAGCAG
ATATTATCCCGCGAGGCATCGTCGACCTCCCCCCCCTCACCTATTCTCGA
AGCCTCCCGTAACTCCCCTTCTCGCCTGGCCCTTCACATCTTCCTTTATC
AACAACCATGGCTGACGCCCTAACCGACGATAAACATAAAAAGAAACTCT
CGCGGAAGGAGCGGGAACGGGAGCTGCGTGCCCTATCCTCGGACGGAACC
GGGTGTGGCTTTAAAAAAGACCTGGTGGCTGATAGACACCTAGACGACCA
ACGCTACGAGCGCGAGCTCGCCTTCAAAAAGCAACAACAAGCCACCGCCG
CAGCTGGAGGGAAAGACGGAGGGGGAAAAGCTATTCCAGGCGTGATGATT
GGAGCACCTCCTCCCTCCGCGGCGTTTGATACGTTGCTACGGATGGAAGC
GGGGTTGGGACAGAGGACAATTCATGATAGTATTAATGACCCGAATCGAC
CGACGTGGGAGGATTACAAAAAGGCCAAGGCCGATAAGCTTGATCTGgta
cgtgataggggagagagggagagaagaggagaggagagttggtctgtaaa
gtcatgagtttttactttttgttcaacttaactccttccacactacccga
caataacacagACAGGAGCAGATGACCGGAAGATGATTGAGTACAGGGCA
CAGCTGGATGCGGAGCGAGCCCGTAGATTGGCACAGAACCGTGGGGAGAA
GGTGGACGAAAAGGGGGAGAAGAAGAAGAAGAGGAGCAGCAGCAAGAAAG
ATAGCAAGAAGAAGAAGAGGAAGAAGGATAGTCGGAAGAAGGACAATAAA
AAGAGGAAACACAAGAAGGAAGACAAGAAAAGGCCGCTTAAAAAGCGAAG
ACGGTCATCGTCGTCTTTGGAGGAGGAGAATGAAGGAATGGATGAAGAGG
AGGGACGAGAGAAGCTTGACGGAGAAAATGGGGAGAAGGAGAAGGAGACG
GAGAAAGTCAGAGGGAATAAGGGCGAACGCGGCAGTGGAGATGACAAGGA
CAAGACTTCTTCGTCGGGGGAGGAAGAAAGAAGTGGTAGGGATGGCAGTG
CCAGAGACGACAAAAAAAAGAGCAAAAAGAAGAAGAGGCAGCGCCGACGG
GACTCCTCCTCCTCCTCTTCTTCCTCATCGTCGTCCTCTTCCTCCGACTC
TGAAGCGTCTGACAGCTCAGGCCCTGTGCAGCTTTCTTCCTTCTTGAGAG
GCCGCAAGGAAGCGACCGACAGCGAAAGTGACTGAGGCAGAATACAGACT
GTAATGAGAGTACATGATTGAAAAAAAGAATGACGAAAAAGTAAATGAAA
CAATGGAGATGCGTAGCGTGAGGCTCGAA
back to top

protein sequence of NO20G00230.1

>NO20G00230.1-protein ID=NO20G00230.1-protein|Name=NO20G00230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=338bp
MADALTDDKHKKKLSRKERERELRALSSDGTGCGFKKDLVADRHLDDQRY
ERELAFKKQQQATAAAGGKDGGGKAIPGVMIGAPPPSAAFDTLLRMEAGL
GQRTIHDSINDPNRPTWEDYKKAKADKLDLTGADDRKMIEYRAQLDAERA
RRLAQNRGEKVDEKGEKKKKRSSSKKDSKKKKRKKDSRKKDNKKRKHKKE
DKKRPLKKRRRSSSSLEEENEGMDEEEGREKLDGENGEKEKETEKVRGNK
GERGSGDDKDKTSSSGEEERSGRDGSARDDKKKSKKKKRQRRRDSSSSSS
SSSSSSSSDSEASDSSGPVQLSSFLRGRKEATDSESD*
back to top
Synonyms
Publications