NO20G00220, NO20G00220 (gene) Nannochloropsis oceanica

Overview
NameNO20G00220
Unique NameNO20G00220
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1671
Alignment locationchr20:75259..76929 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:75259..76929 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029058AB_hydrolase
Homology
The following BLAST results are available for this feature:
BLAST of NO20G00220 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002546NSK002546Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G00220.1NO20G00220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594256gene_6232Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G00220.1NO20G00220.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G00220 ID=NO20G00220|Name=NO20G00220|organism=Nannochloropsis oceanica|type=gene|length=1671bp
CCTCCATGCTTCACCAAAATGAACATCCCCAACTGACCACTTTCTCCTCC
CCAGCCCTTTGCAAACACACACAAGGCCCGCTCCGTCCATGTGGCCACAA
CTACGCCAACAATTTATGCTGCATATTCCGTTCTTTGTCGTTGTCTTCGA
TACCGCTGCCTTTGCATCCTCTCGAATGGTGCGGGGGAAATCTAATCCTC
CCGCTGACACCACGCCAATCACCGTCCCTGCGATCAGCACTGCCGCTGCG
ACTGACAAGCTCCTCCTACTTAATGACCTGTCGCTTGAGCAGGCCTATCT
ACACCACTCGAGTATGGGAGCAGTCCCGGGTGCAGTAGGGGGGTCATCGT
CTTTAGCTCAGCAAGCCGCCCGTCTCGCTGCGGGTTCCTACTCAGGCACA
ACGGGACAGGCCCTTGGTGGCTGGCGAGTGCAAGCCACGTACCAAAATAT
TAATTCTGTGGCAGTCATCTCAACGAGGCCCGGCGCAGACAGTGAAAAGC
AGACCTGTGCCTTGGCTTTTCGGGGAAGTGACGACCGCCTAGATTGGAGG
AATGATTATATGGCTCGACCATTTCCTATGCTGCTGTGCGGTGAAGAGGA
GGAAGACAAGGAACGTTTCTTTTTGGATATACTTACGACACGTGCAGACA
ATGCGGAAGATGGATCACAATACACGGAAGAAAGTAGAAGACGACGTGGC
CAACGCTGGCAACAGACATCATCACTAGTAGGCGGCCAGCAAAGAATGGA
GACCGGGAACAGCACCAACGAGAATGAAAGCAGAAGAAGCAATAGCAGCA
GTGAACAGATCAACGGCGGCGCATCCACTCTAGTAAACCTACGACAGCGT
TGCCCCCGTCTTCTTAGCCTCCACGTGCTTCATTACGGCTTTTACCAATC
CTTCCGCCTGCTAAGCAGCGGCACCACCCTAGCCCAGGACTGGGGGAGGT
ACTTTCGGAACGGGACGTGCGACCCTGACATCTCCATTATCACGGGTCAT
AGCCTTGGAGGTGCTTTCACGATATATGCCTCGATTTTGGGCTGGCCAGG
AGCGCCTATTACCTTTGCAGCCCCGAGGGCTGTGATCAATGGCTCGTGCC
CCACAACTGCAGGAAGAGGGGCTAGAACTACGACCACCACTATGGTGGAG
AGGAGTACGGATGAAGACGTACCTATTACGCGTATCTACCTCACCGATGA
TCCGGTCCCGGCCACGCTTCCTGTGAATGATGCCGTACGTCTGGGGATCG
GAGGTTCTTGGGTCCACTGCGGCTGTGCATTGGCGTTACAGCCGTCCGTG
ACCGCTGGGGAGGAGGAAGGAGAGGGGGGAAAAGGAAAGCAGGAATTTTT
TGCGGCTAAGGCCATGGGCTGTGGTTCGAATGAGCCCTTGCGAGAGGCAA
CGCTGCTCCCATCTCTGCCATCCCTGCCTGTATCGGTGGCATTGCCCTCC
CTAGGTCAAAATCGTGGATGGGGAGACGAGGAAGAAGTGGAAGCAGCAGA
TGCGAATCCTCTACTGCCAGGCGGTTTGTTAGCCCCTGAAGAGTTGAAGA
GACATGTACACACACGATACGTCCGAGCGATGGATGAAGCGTGCCAAGGA
CCATTGGATAGTATGCGGTGTTTGTTCGATCACGAAGTATGAAATGGAGA
GACGCGCAACGAAAATGAGAA
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protein sequence of NO20G00220.1

>NO20G00220.1-protein ID=NO20G00220.1-protein|Name=NO20G00220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=518bp
MWPQLRQQFMLHIPFFVVVFDTAAFASSRMVRGKSNPPADTTPITVPAIS
TAAATDKLLLLNDLSLEQAYLHHSSMGAVPGAVGGSSSLAQQAARLAAGS
YSGTTGQALGGWRVQATYQNINSVAVISTRPGADSEKQTCALAFRGSDDR
LDWRNDYMARPFPMLLCGEEEEDKERFFLDILTTRADNAEDGSQYTEESR
RRRGQRWQQTSSLVGGQQRMETGNSTNENESRRSNSSSEQINGGASTLVN
LRQRCPRLLSLHVLHYGFYQSFRLLSSGTTLAQDWGRYFRNGTCDPDISI
ITGHSLGGAFTIYASILGWPGAPITFAAPRAVINGSCPTTAGRGARTTTT
TMVERSTDEDVPITRIYLTDDPVPATLPVNDAVRLGIGGSWVHCGCALAL
QPSVTAGEEEGEGGKGKQEFFAAKAMGCGSNEPLREATLLPSLPSLPVSV
ALPSLGQNRGWGDEEEVEAADANPLLPGGLLAPEELKRHVHTRYVRAMDE
ACQGPLDSMRCLFDHEV*
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Synonyms
Publications