NO20G00200, NO20G00200 (gene) Nannochloropsis oceanica

Overview
NameNO20G00200
Unique NameNO20G00200
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2071
Alignment locationchr20:70869..72939 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:70869..72939 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO20G00200 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G00200.2NO20G00200.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO20G00200.1NO20G00200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G00200.2NO20G00200.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO20G00200.1NO20G00200.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G00200 ID=NO20G00200|Name=NO20G00200|organism=Nannochloropsis oceanica|type=gene|length=2071bp
TGCTAATGACGTTTCCCATCAATTGACGAGGAACGCAACTAGTGCATCTG
TATGGTGGCGGAGGAAGTCGAAGCCTTGACCGCGCCTGCTTTGCTAAGTA
GCTAGTCCGTTTTGTGATTGGACAGTGAATCGGTGTGATACATGGTTCGT
TGCGGCCTGGACCTCACTGGGAGTCTCCAAGGAAAATCCATGCTTCTTTG
ACCTCCTGTCCCCCCTCTCACTGCCACAGCCACACGATTCACGATACGAC
ATAGAGAGATGGATGCCCTTCTTCCCGCCTTCCATTCAGGCCATGATCTC
ATACTTGGGGACGACAACGCCGTTCATTTGCCGCCTTTCCCGTTTTGTCG
AGCGCGCCATCGACCTCTTCCGCCTCCCTTCCCGTTCCCGGgtacgtgtg
tgtgagtgtttgtatgtggcatagttaaataaggggggaagagaaaggat
ggaaagatagaggggcaggcgggagggcttgaagacggtcgtggagacgg
ttaggacgagcgtatgtgcgcgcctatgcgagcagtaaccgtggcgaggc
atggaggggagggatcgtatgcttgggagacacacctcacatctttatgt
ccgcgtgcatgcgcgctcatggctccaggacaaagcagaagagtgtgaag
ggcctcgagatcaatcttgggttataatttctcgtaggattataatttca
cgttgtcacaaaattaatgctaccactcgcatcaccaccaccatcactca
aacagAACTTCTCTCGACTCTCTGTCCTGCCGCCCCTGCCTCTTCCTCCG
TCTCCTCTGCCTCTACATCCATCTCTTTACAAAATGACTTGTCACGCCGT
CAGCAACAGCGGCGGCAGCAACGTGAGCAGCAGCGGCATGAACGGCAGCA
ACACGGCGATGAAGTTTGGGAGGGAGCTCAAGGCGATTGCTCGGTTACAA
ATGCTCGAGATGAAGCGGGAGCGCCACTTGATATCGCATCAGTATCAGAG
AGCGCATGGCAAACGGAAGTTGAAGAAGAAGgtaggttagggtggcagta
cactgcgagcatttccactgtagccgtacatctccccttgtgcattcaag
cttcacaacacgaattcctccattttcccctcccactgtttcccaacccc
catccctttctttccgtagCTGTATACTACGAAGAAGAGGAGCAGCTTAT
CCTCTCCCCCGAGTGGGCTCTTTACTTCAGCATGCGTAAGCACGCGCGCG
AGGCCCGCAAGGgtaagaagaagaaaatgaaggaggcagatgggtggggg
agaggaagacaggctggtagcgtaggatagaggttttgatagaattggtt
atgtatgacatttcttatcatctcttctcttttcgccttcactttctttc
cttttttaccctacttgtcgtgttatttaagCTGGCAAGAAGCGGAAGCG
GGAGATAGTGCAGTGGCCGGCGGGTATGGAGGGAGGAGCAGCAACAACAA
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACGGCAGCA
GCTGCAGCAGTGCCTGCAGTACCAGATAGGTCATTTCATCTTTCATCAGG
TCTATCGTCGCCGACAAGGGACGATGACGCGGCGGTGAATGGAGTCGGCC
TCGACCAGAACCGACACCGTCTCCACCACTATCAGCAGCAGCAGCAGCGG
CAGCAGCAGCAGCGGCAGCAGGAGCAGCCGCAGCAGCAGCAGTACTTGGG
GACTAAAAGGACGAGGGGGAATCGAGGAGGTTGCAAGAGAAATAAACAGC
AACGAACCTTTCCTCCTTGCTTGAGGGGATGTGCATGGGTGGAGACGGAA
GATGGAGGGGGGAGGGGTGGACGGGGGGAATGGGAGGGGCGGCAGCAGAA
CGAGAGGCAGAAAAAATAAGAACAGAAGCAGCAGGTGAAGCAAGAGAGGA
GGAAGAGGGGGAAAAGCAACAAACAGCAAAATGAGCTGAGACGTAAATAT
AAATTTCTCATGCGAAAACATATTTAGGTGTATGGGCGAGACCGCAGGCA
TTTGCTGCCATGCATGAAACC
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protein sequence of NO20G00200.2

>NO20G00200.2-protein ID=NO20G00200.2-protein|Name=NO20G00200.2|organism=Nannochloropsis oceanica|type=polypeptide|length=236bp
MDALLPAFHSGHDLILGDDNAVHLPPFPFCRARHRPLPPPFPFPELLSTL
CPAAPASSSVSSASTSISLQNDLSRRQQQRRQQREQQRHERQQHGDEVWE
GAQGDCSVTNARDEAGAPLDIASVSESAWQTEVEEEGRLGWQYTASISTV
AVHLPLCIQASQHEFLHFPLPLFPNPHPFLSVAVYYEEEEQLILSPEWAL
YFSMRKHAREARKGKKKKMKEADGWGRGRQAGSVG*
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protein sequence of NO20G00200.1

>NO20G00200.1-protein ID=NO20G00200.1-protein|Name=NO20G00200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=330bp
MDALLPAFHSGHDLILGDDNAVHLPPFPFCRARHRPLPPPFPFPELLSTL
CPAAPASSSVSSASTSISLQNDLSRRQQQRRQQREQQRHERQQHGDEVWE
GAQGDCSVTNARDEAGAPLDIASVSESAWQTEVEEEAVYYEEEEQLILSP
EWALYFSMRKHAREARKAGKKRKREIVQWPAGMEGGAATTTAAAAAAAAA
ATTTTAAAAAVPAVPDRSFHLSSGLSSPTRDDDAAVNGVGLDQNRHRLHH
YQQQQQRQQQQRQQEQPQQQQYLGTKRTRGNRGGCKRNKQQRTFPPCLRG
CAWVETEDGGGRGGRGEWEGRQQNERQKK*
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Synonyms
Publications