NO20G00140, NO20G00140 (gene) Nannochloropsis oceanica

Overview
NameNO20G00140
Unique NameNO20G00140
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1210
Alignment locationchr20:50437..51646 +

Link to JBrowse

Properties
Property NameValue
DescriptionArsenate reductase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:50437..51646 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036196Ptyr_pPase_sf
IPR023485Ptyr_pPase_SF
Homology
BLAST of NO20G00140 vs. NCBI_GenBank
Match: XP_005854422.1 (protein-tyrosine low molecular weight [Nannochloropsis gaditana CCMP526] >EKU21935.1 protein-tyrosine low molecular weight [Nannochloropsis gaditana CCMP526] >EWM22228.1 arsenate reductase [Nannochloropsis gaditana])

HSP 1 Score: 155.2 bits (391), Expect = 1.500e-34
Identity = 75/110 (68.18%), Postives = 84/110 (76.36%), Query Frame = 0
Query:   24 VHEYLSGEETTTHFQPFLVSQAIAAMRAIGYDLSAHDSKSLEEVKSFAPFDAVVTMGCGDACPWMPAKRFVNWTITDPKHMEPEEFNKIRDYIKGLVTDLLAELEAERAG 134
            V  Y +G + +    P    +AI +M+ IGYDLS HDSKSLEEV+ FAPFDAVVTMGCGDACPWMPAKR VNWTI DPKHMEPEEFNKIRDYI+ LV +LL ELE    G
Sbjct:   37 VEAYSAGSKPSGVVNP----KAILSMKEIGYDLSLHDSKSLEEVERFAPFDAVVTMGCGDACPWMPAKRTVNWTIPDPKHMEPEEFNKIRDYIRSLVKELLDELETGNDG 142          
BLAST of NO20G00140 vs. NCBI_GenBank
Match: WP_086103834.1 (arsenate reductase ArsC [Chitinophagaceae bacterium IBVUCB2] >OSZ81379.1 low molecular weight phosphatase family protein [Chitinophagaceae bacterium IBVUCB2])

HSP 1 Score: 152.9 bits (385), Expect = 7.400e-34
Identity = 69/105 (65.71%), Postives = 83/105 (79.05%), Query Frame = 0
Query:   24 VHEYLSGEETTTHFQPFLVSQAIAAMRAIGYDLSAHDSKSLEEVKSFAPFDAVVTMGCGDACPWMPAKRFVNWTITDPKHMEPEEFNKIRDYIKGLVTDLLAELE 129
            +  Y +G + +    P    +AIAAM+ +GYDL  HDSKSLEEVK FAPFDAVVTMGCGDACPWMPAK+F++W I DPKHMEP+EFNK+RDYIK LV+DLL  L+
Sbjct:   31 IEAYSAGSKPSGIVNP----KAIAAMKELGYDLGEHDSKSLEEVKQFAPFDAVVTMGCGDACPWMPAKQFIDWQIPDPKHMEPQEFNKVRDYIKSLVSDLLISLK 131          
BLAST of NO20G00140 vs. NCBI_GenBank
Match: OYY22533.1 (low molecular weight phosphatase family protein [Sphingobacteriia bacterium 35-40-8] >OYZ48337.1 low molecular weight phosphatase family protein [Bacteroidetes bacterium 24-39-8] >OZA68706.1 low molecular weight phosphatase family protein [Sphingobacteriia bacterium 39-39-8])

HSP 1 Score: 146.0 bits (367), Expect = 9.000e-32
Identity = 62/84 (73.81%), Postives = 75/84 (89.29%), Query Frame = 0
Query:   44 QAIAAMRAIGYDLSAHDSKSLEEVKSFAPFDAVVTMGCGDACPWMPAKRFVNWTITDPKHMEPEEFNKIRDYIKGLVTDLLAEL 128
            +AIAAM+ +GYDLS HDSKSL++V+ +APFDAVVTMGCGDACPWMPAKRFV+W I DPKHMEPE+FN++RDYI G V +L+ EL
Sbjct:   48 KAIAAMKELGYDLSTHDSKSLQDVEQYAPFDAVVTMGCGDACPWMPAKRFVDWQIPDPKHMEPEQFNEVRDYISGKVKELILEL 131          
BLAST of NO20G00140 vs. NCBI_GenBank
Match: OYU56249.1 (low molecular weight phosphatase family protein [Chitinophagaceae bacterium BSSC1])

HSP 1 Score: 145.6 bits (366), Expect = 1.200e-31
Identity = 65/104 (62.50%), Postives = 82/104 (78.85%), Query Frame = 0
Query:   24 VHEYLSGEETTTHFQPFLVSQAIAAMRAIGYDLSAHDSKSLEEVKSFAPFDAVVTMGCGDACPWMPAKRFVNWTITDPKHMEPEEFNKIRDYIKGLVTDLLAEL 128
            +  Y +G + +    P    +AIAAM+ +GYDLS HDSKSL+EV+ +APFDAVVTMGCGDACPWMPAKRFV+W I DPK+MEPE+FN++RDYI G V +L+ EL
Sbjct:   32 IEAYSAGSKPSGIVNP----KAIAAMKELGYDLSTHDSKSLQEVEQYAPFDAVVTMGCGDACPWMPAKRFVDWQIPDPKYMEPEQFNEVRDYISGKVKELILEL 131          
BLAST of NO20G00140 vs. NCBI_GenBank
Match: WP_039130166.1 (arsenate reductase ArsC [Flavihumibacter sp. ZG627] >KIC90926.1 protein tyrosine phosphatase [Flavihumibacter sp. ZG627])

HSP 1 Score: 141.7 bits (356), Expect = 1.700e-30
Identity = 64/105 (60.95%), Postives = 80/105 (76.19%), Query Frame = 0
Query:   23 AVHEYLSGEETTTHFQPFLVSQAIAAMRAIGYDLSAHDSKSLEEVKSFAPFDAVVTMGCGDACPWMPAKRFVNWTITDPKHMEPEEFNKIRDYIKGLVTDLLAEL 128
            AV  Y +G + +    P    +AIAAM+ +GYDLS HDSKSL+EV+  APFDAVVTMGCGDACPWMPA++F++W I DPKHMEPE FN++RDYI   V +L+A L
Sbjct:   31 AVEAYSAGSKPSGIVNP----KAIAAMKELGYDLSTHDSKSLQEVEKHAPFDAVVTMGCGDACPWMPARQFIDWQIPDPKHMEPEAFNEVRDYIASKVRELIANL 131          
BLAST of NO20G00140 vs. NCBI_GenBank
Match: WP_051347726.1 (arsenate reductase ArsC [Asinibacterium sp. OR43])

HSP 1 Score: 138.3 bits (347), Expect = 1.900e-29
Identity = 65/110 (59.09%), Postives = 81/110 (73.64%), Query Frame = 0
Query:   18 LYHPIAVHEYLSGEETTTHFQPFLVSQAIAAMRAIGYDLSAHDSKSLEEVKSFAPFDAVVTMGCGDACPWMPAKRFVNWTITDPKHMEPEEFNKIRDYIKGLVTDLLAEL 128
            LY   AV  + +G + +    P    +AIAAM+ +GYDLS HDSKSL+EV+ +APFDAVVTMGCGDACPWMPAK+F++W I DPKH+EP EFN+IRD I   V  L+A L
Sbjct:   32 LYGGDAVEAFSAGSKPSGIVNP----KAIAAMKELGYDLSKHDSKSLQEVEQYAPFDAVVTMGCGDACPWMPAKQFIDWQIPDPKHLEPAEFNQIRDMIGEKVKQLIASL 137          
BLAST of NO20G00140 vs. NCBI_GenBank
Match: SDW60391.1 (Protein-tyrosine-phosphatase [Hydrobacter penzbergensis])

HSP 1 Score: 137.5 bits (345), Expect = 3.200e-29
Identity = 64/110 (58.18%), Postives = 81/110 (73.64%), Query Frame = 0
Query:   18 LYHPIAVHEYLSGEETTTHFQPFLVSQAIAAMRAIGYDLSAHDSKSLEEVKSFAPFDAVVTMGCGDACPWMPAKRFVNWTITDPKHMEPEEFNKIRDYIKGLVTDLLAEL 128
            +Y   AV  + +G + +    P    +AIAAM+ +GYDLS HDSKSL+EV+ +APFDAVVTMGCGDACPWMPAK+F++W I DPKH+EP EFN+IRD I   V  L+A L
Sbjct:   52 IYGGDAVEAFSAGSKPSGIVNP----KAIAAMKELGYDLSKHDSKSLQEVEQYAPFDAVVTMGCGDACPWMPAKQFIDWQIPDPKHLEPAEFNQIRDMIGEKVKQLIASL 157          
BLAST of NO20G00140 vs. NCBI_GenBank
Match: WP_092723056.1 (MULTISPECIES: arsenate reductase ArsC [Chitinophagaceae])

HSP 1 Score: 137.5 bits (345), Expect = 3.200e-29
Identity = 64/110 (58.18%), Postives = 81/110 (73.64%), Query Frame = 0
Query:   18 LYHPIAVHEYLSGEETTTHFQPFLVSQAIAAMRAIGYDLSAHDSKSLEEVKSFAPFDAVVTMGCGDACPWMPAKRFVNWTITDPKHMEPEEFNKIRDYIKGLVTDLLAEL 128
            +Y   AV  + +G + +    P    +AIAAM+ +GYDLS HDSKSL+EV+ +APFDAVVTMGCGDACPWMPAK+F++W I DPKH+EP EFN+IRD I   V  L+A L
Sbjct:   25 IYGGDAVEAFSAGSKPSGIVNP----KAIAAMKELGYDLSKHDSKSLQEVEQYAPFDAVVTMGCGDACPWMPAKQFIDWQIPDPKHLEPAEFNQIRDMIGEKVKQLIASL 130          
BLAST of NO20G00140 vs. NCBI_GenBank
Match: PQV60776.1 (protein-tyrosine-phosphatase [Vibrionimonas magnilacihabitans])

HSP 1 Score: 137.5 bits (345), Expect = 3.200e-29
Identity = 64/110 (58.18%), Postives = 81/110 (73.64%), Query Frame = 0
Query:   18 LYHPIAVHEYLSGEETTTHFQPFLVSQAIAAMRAIGYDLSAHDSKSLEEVKSFAPFDAVVTMGCGDACPWMPAKRFVNWTITDPKHMEPEEFNKIRDYIKGLVTDLLAEL 128
            +Y   AV  + +G + +    P    +AIAAM+ +GYDLS HDSKSL+EV+ +APFDAVVTMGCGDACPWMPAK+F++W I DPKH+EP EFN+IRD I   V  L+A L
Sbjct:   36 IYGGDAVEAFSAGSKPSGIVNP----KAIAAMKELGYDLSKHDSKSLQEVEQYAPFDAVVTMGCGDACPWMPAKQFIDWQIPDPKHLEPAEFNQIRDMIGEKVKQLIASL 141          
BLAST of NO20G00140 vs. NCBI_GenBank
Match: WP_026768278.1 (arsenate reductase ArsC [Asinibacterium sp. OR53])

HSP 1 Score: 137.1 bits (344), Expect = 4.200e-29
Identity = 64/110 (58.18%), Postives = 81/110 (73.64%), Query Frame = 0
Query:   18 LYHPIAVHEYLSGEETTTHFQPFLVSQAIAAMRAIGYDLSAHDSKSLEEVKSFAPFDAVVTMGCGDACPWMPAKRFVNWTITDPKHMEPEEFNKIRDYIKGLVTDLLAEL 128
            +Y   AV  + +G + +    P    +AIAAM+ +GYDLS HDSKSL+EV+ +APFDAVVTMGCGDACPWMPAK+F++W I DPKH+EP EFN+IRD I   V  L+A L
Sbjct:   25 IYGGDAVEAFSAGSKPSGIVNP----KAIAAMKELGYDLSKHDSKSLQEVEQYAPFDAVVTMGCGDACPWMPAKQFIDWQIPDPKHLEPVEFNQIRDMIGEKVKQLIASL 130          
The following BLAST results are available for this feature:
BLAST of NO20G00140 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005854422.11.500e-3468.18protein-tyrosine low molecular weight [Nannochloro... [more]
WP_086103834.17.400e-3465.71arsenate reductase ArsC [Chitinophagaceae bacteriu... [more]
OYY22533.19.000e-3273.81low molecular weight phosphatase family protein [S... [more]
OYU56249.11.200e-3162.50low molecular weight phosphatase family protein [C... [more]
WP_039130166.11.700e-3060.95arsenate reductase ArsC [Flavihumibacter sp. ZG627... [more]
WP_051347726.11.900e-2959.09arsenate reductase ArsC [Asinibacterium sp. OR43][more]
SDW60391.13.200e-2958.18Protein-tyrosine-phosphatase [Hydrobacter penzberg... [more]
WP_092723056.13.200e-2958.18MULTISPECIES: arsenate reductase ArsC [Chitinophag... [more]
PQV60776.13.200e-2958.18protein-tyrosine-phosphatase [Vibrionimonas magnil... [more]
WP_026768278.14.200e-2958.18arsenate reductase ArsC [Asinibacterium sp. OR53][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002538NSK002538Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G00140.1NO20G00140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594203gene_6223Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100312g9gene8218Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G00140.1NO20G00140.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G00140 ID=NO20G00140|Name=NO20G00140|organism=Nannochloropsis oceanica|type=gene|length=1210bp
ACAGCCCCTCTCTCCTGGCTCTGCCGACGCCTACCAGCACGAGCAACATG
GCGGACACTGCCAGCCCCGTTCCCTTTAAGCTCCTTTTTGTGTGCGTGGA
AAATTCGAATCGCAGTCAGATGAGCCAAGCTTTTGCCAAGATTCTGGGCG
GGGATAAGGTGGAGTCATACAGCGCAGGTAATTCTTTTTCTGTAGTTTCC
TACAATCCTAAAATTATCGCGTGCAACCTATCCGCAGAAGCCTTCCAAAA
ATAGATTTTTGCATATTCTCCCCTTATTTTGGCCGAGTTTTAAATGGCTT
TGGCAGGTTTTTCACGCATCCTTGTCTCCTCGCACAGGTAGCAAGCCCAG
TGGGATTGTCAACCCCAAGGTACGAAACTAGGAAGAGAGAATGAATGAGG
AAGGGCAGGAGGCAAGGACGTTTAGGTCAAAGGAGAAATAGATTCCTCTA
TCATCCAATTGCTGTCCATGAATATTTATCCGGAGAAGAAACAACAACAC
ACTTTCAACCTTTTCTTGTCTCCCAGGCTATTGCGGCTATGCGGGCGATC
GGGTACGACCTGTCAGCGCACGACTCCAAGAGCCTGGAGGAAGTCAAGAG
CTTTGCCCCCTTTGACGCAGTGGTGACCATGGGCTGTGGTGATGCCTGCC
CTTGGATGCCGGCGAAGCGATTCGTGAACTGGACGATCACTGATCCAAAA
gtacgcggggaaaagaggggagagggaaagagggagggagggagggaagg
agcgagcgagggagcgaggaaaggggtaagacaggctggggttgagatat
aatttttaaatatgaagcatacttgcactttttgcattgtcatgttgtaa
ttggatcacggtagcacaccctctgtgacttttttccctttaatcactag
ctcacttccttccttcctcccttccttcccccacctcaccagCACATGGA
GCCGGAGGAGTTCAACAAGATCCGGGACTACATCAAAGGCCTGGTCACTG
ATCTGTTGGCCGAGCTAGAGGCAGAACGTGCGGGCGGGGCGGCGAGGGAG
GCCAAGGAGTAGGAAAAACAGAAGGGATAGAATGGGGAGGGGGGGAAAGA
GCATGGAATGGAGGGGGAGCAAGAGGAAGGAGAAGTGGTGGATATATTTC
AGTAAATAATCAACCCTGCTTTAGTCAGCCTAATCGACATGAAAATGAAG
ACATAAAACA
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protein sequence of NO20G00140.1

>NO20G00140.1-protein ID=NO20G00140.1-protein|Name=NO20G00140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=142bp
MRKGRRQGRLGQRRNRFLYHPIAVHEYLSGEETTTHFQPFLVSQAIAAMR
AIGYDLSAHDSKSLEEVKSFAPFDAVVTMGCGDACPWMPAKRFVNWTITD
PKHMEPEEFNKIRDYIKGLVTDLLAELEAERAGGAAREAKE*
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Synonyms
Publications