NO20G00110, NO20G00110 (gene) Nannochloropsis oceanica

Overview
NameNO20G00110
Unique NameNO20G00110
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2510
Alignment locationchr20:36228..38737 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:36228..38737 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019448NT-C2
Homology
BLAST of NO20G00110 vs. NCBI_GenBank
Match: EWM22222.1 (hypothetical protein Naga_100312g4 [Nannochloropsis gaditana])

HSP 1 Score: 159.8 bits (403), Expect = 1.500e-35
Identity = 104/218 (47.71%), Postives = 117/218 (53.67%), Query Frame = 0
Query:  122 MLHFSVRQTHRRTGAIKRVGILDINMSEYLAAGRKTDLCLLQESRFNASLHFTLASRQLMGDPLYRCPLAAKQVEEDPPELRPSSSELLRSSWGRDXXXXXXXXXXXXXXXXXXXRVLRVAPRAGTGAEHVFPPFXXXXXXXXXXXXXXXXXXXXXXXXXXXDRLYARSVSLPLAARPPSLLSLDG----RERRADTFNYSSYKRETAGECRQRDSME 336
            MLHFSVRQ +RRTGA+KRVG+LDINMSE+++AG K  LCLLQESRFNASLHFTLA RQL GDPLYRCPLAAKQV+++PPELRP SSELLR                                         FPPF                                +S SLP  A   SLLS +     R+RRA TFNY SYKR  A   R  DS+E
Sbjct:    1 MLHFSVRQVNRRTGAVKRVGVLDINMSEFVSAGNKAALCLLQESRFNASLHFTLACRQLSGDPLYRCPLAAKQVKDNPPELRPRSSELLRLP---------------------------------------FPPFPTSADSSSPYPLSPAGSSSLPRS--------TQSASLP--APVASLLSAEALEEWRDRRALTFNYESYKRSLARRNRVADSVE 169          
BLAST of NO20G00110 vs. NCBI_GenBank
Match: SAM00710.1 (hypothetical protein [Absidia glauca])

HSP 1 Score: 73.2 bits (178), Expect = 1.900e-9
Identity = 42/133 (31.58%), Postives = 70/133 (52.63%), Query Frame = 0
Query:   49 RSLKFEVTLTIHGLLHYP-QSGRLFVKWKDGQGSYGLTKAVNVSTRDYTVRWEIPFTFLASFRVDNESNILLPRMLHFSVRQTHRRTGAIKRVGILDINMSEYLAAGRKTDLCLLQESRFNASLHFTLASRQL 181
            R +++E+ L I  + + P  SG  FVKW+    ++          +D+TV W    T +A   V ++ ++L P  L   + Q    TGA K++G L INMSEY  +G  T   LL+E +FN+ +  ++  +Q+
Sbjct:   12 RKVEYEINLVIQDITNIPLVSGSYFVKWRLRNATHSTGVTTKEPIKDHTVEWFSSVTTMAEL-VISKQHMLQPCELKLEIYQEVGGTGAAKQMGSLSINMSEYATSGSITRRYLLEECKFNSFIKLSIDMKQV 143          
BLAST of NO20G00110 vs. NCBI_GenBank
Match: CEG83274.1 (hypothetical protein RMATCC62417_17227 [Rhizopus microsporus])

HSP 1 Score: 70.9 bits (172), Expect = 9.400e-9
Identity = 51/164 (31.10%), Postives = 85/164 (51.83%), Query Frame = 0
Query:   40 FPPLRRASSRSLKFEVTLTIHGLLHYP-QSGRLFVKWKDGQGSYGLTKAVNVSTRDYTVRWEIPFTFLASFRVDNESNILLPRMLHFSVRQTHRRTGAIKRVGILDINMSEYLAAGRKTDLCLLQESRFNASLHFTL-ASRQLMGDPLYRC-PLAAKQVEEDPP 201
            F  L  + SR + FEV++ I  L++ P  SG  +V WK    ++      +V  +D+ V W  P   ++   +D +  +L    L   + Q     G IK +G L IN+SEY  +G  T+  LLQ+ +FN+++  TL  + +  G P ++  PL+ KQ+ +D P
Sbjct:    4 FSHLFVSKSRKVPFEVSIIIRDLVNIPLVSGYYYVSWKLKHATHTGGSTPSVHIKDHQVTWNYPINTMSKLVID-KHQVLSDCELKLEIYQ----KGGIK-IGTLSINLSEYAGSGVITERYLLQDCKFNSTIKLTLRMNTKSDGYPQFQTPPLSRKQIFKDIP 161          
BLAST of NO20G00110 vs. NCBI_GenBank
Match: CEG65082.1 (hypothetical protein RMATCC62417_01946 [Rhizopus microsporus] >CEI95929.1 hypothetical protein RMCBS344292_10103 [Rhizopus microsporus])

HSP 1 Score: 70.9 bits (172), Expect = 9.400e-9
Identity = 50/162 (30.86%), Postives = 80/162 (49.38%), Query Frame = 0
Query:   40 FPPLRRASSRSLKFEVTLTIHGLLHYP-QSGRLFVKWKDGQGSYGLTKAVNVSTRDYTVRWEIPFTFLASFRVDNESNILLPRMLHFSVRQTHRRTGAIKRVGILDINMSEYLAAGRKTDLCLLQESRFNASLHFTLASRQLMGDPLYRCPLAAKQVEEDPP 201
            F  L  + SR + FEV++ I  L++ P  SG  +V WK    ++      +V  +D+ V W  P   ++   +D +  +L    L   + Q     G IK +G L IN+SEY  +G  T+  LLQ+ +FN+++  TL       D     PL+ KQ+ +D P
Sbjct:    4 FSHLFVSKSRKVPFEVSIIIRDLVNIPLVSGYYYVSWKLKHATHTGGSTPSVHIKDHQVTWNYPINTMSKLVID-KHQVLSDCELKLEIYQ----KGGIK-IGTLSINLSEYAGSGVITERYLLQDCKFNSTIKLTL-RMNTKSDSYPHPPLSRKQIFKDIP 158          
BLAST of NO20G00110 vs. NCBI_GenBank
Match: XP_023467048.1 (hypothetical protein RHIMIDRAFT_118834 [Rhizopus microsporus ATCC 52813] >PHZ13340.1 hypothetical protein RHIMIDRAFT_118834 [Rhizopus microsporus ATCC 52813])

HSP 1 Score: 70.1 bits (170), Expect = 1.600e-8
Identity = 51/164 (31.10%), Postives = 85/164 (51.83%), Query Frame = 0
Query:   40 FPPLRRASSRSLKFEVTLTIHGLLHYP-QSGRLFVKWKDGQGSYGLTKAVNVSTRDYTVRWEIPFTFLASFRVDNESNILLPRMLHFSVRQTHRRTGAIKRVGILDINMSEYLAAGRKTDLCLLQESRFNASLHFTL-ASRQLMGDPLYRC-PLAAKQVEEDPP 201
            F  L  + SR + FEV++ I  L++ P  SG  +V WK    ++      +V  +D+ V W  P   ++   +D +  +L    L   + Q     G IK +G L IN+SEY  +G  T+  LLQ+ +FN+++  TL  + +  G P ++  PL+ KQ+ +D P
Sbjct:    4 FSHLFVSKSRKVPFEVSIIIRDLVNIPLVSGYYYVSWKLKHATHTGGSTPSVHIKDHQVTWNYPINTMSKLVID-KHQMLSDCELKLEIYQ----KGGIK-IGTLSINLSEYAGSGVITERYLLQDCKFNSTIKLTLRMNTKSDGYPQFQTPPLSRKQIFKDIP 161          
BLAST of NO20G00110 vs. NCBI_GenBank
Match: ORE14488.1 (hypothetical protein BCV71DRAFT_257978 [Rhizopus microsporus])

HSP 1 Score: 68.9 bits (167), Expect = 3.600e-8
Identity = 48/158 (30.38%), Postives = 80/158 (50.63%), Query Frame = 0
Query:   46 ASSRSLKFEVTLTIHGLLHYP-QSGRLFVKWKDGQGSYGLTKAVNVSTRDYTVRWEIPFTFLASFRVDNESNILLPRMLHFSVRQTHRRTGAIKRVGILDINMSEYLAAGRKTDLCLLQESRFNASLHFTLASRQLMGD-PLYRC-PLAAKQVEEDPP 201
            + SR + FEV++ I  L++ P  SG  +V WK    ++      +V  +D+ V W  P   ++   +D +  +L    L   + Q     G IK +G L IN+SEY  +G  T+  LLQ+ +FN+++  TL         P ++  PL+ KQ+ +D P
Sbjct:   33 SKSRKVPFEVSIIIRDLVNIPLVSGYYYVSWKLKHATHTGGSTPSVHIKDHQVTWNYPINTMSKLVID-KHQVLSDCELKLEIYQ----KGGIK-IGTLSINLSEYAGSGVITERYLLQDCKFNSTIKLTLRMNTKSDSYPQFQTPPLSRKQIFKDIP 184          
BLAST of NO20G00110 vs. NCBI_GenBank
Match: XP_005706952.1 (hypothetical protein isoform 2 [Galdieria sulphuraria] >EME30432.1 hypothetical protein Gasu_23350 isoform 2 [Galdieria sulphuraria])

HSP 1 Score: 68.6 bits (166), Expect = 4.700e-8
Identity = 57/167 (34.13%), Postives = 77/167 (46.11%), Query Frame = 0
Query:   53 FEVTLTIHGLLHYPQS-GRLFVKWK----DGQGSYGLTKAVNVSTRDYTVRWEIPFTFLASFRVDNESNILLPRM-LHFSVRQTHRRTGAIKRVGILDINMSEYLAAGRKTDLCLLQESRFNASLHFTLASRQLMGDPLYRCPLAAKQVEEDPPELRPSSSELLRSS 214
            F+VTL +  L  +P S G +F KWK         +G TK   V     TV W   FTF        E    L    L  S+R+  +  G I R GI++++++EY          LLQESR NA L  +L  RQ  GDP ++ P  + +V        PSSS+   SS
Sbjct:   11 FQVTLVLEELRQFPLSHGTIFAKWKLQPQVADPHFGFTKRTQVVRN--TVIWNDRFTFSVKLGAAGERGEELRSCGLRISIRE-EKNIGHI-RHGIIELDLAEYAGLPTVRKNFLLQESRTNAVLSLSLTLRQTSGDPTFKRPFKSVKV------TLPSSSDTQNSS 167          
BLAST of NO20G00110 vs. NCBI_GenBank
Match: XP_005706953.1 (hypothetical protein isoform 1 [Galdieria sulphuraria] >EME30433.1 hypothetical protein Gasu_23350 isoform 1 [Galdieria sulphuraria])

HSP 1 Score: 68.6 bits (166), Expect = 4.700e-8
Identity = 57/167 (34.13%), Postives = 77/167 (46.11%), Query Frame = 0
Query:   53 FEVTLTIHGLLHYPQS-GRLFVKWK----DGQGSYGLTKAVNVSTRDYTVRWEIPFTFLASFRVDNESNILLPRM-LHFSVRQTHRRTGAIKRVGILDINMSEYLAAGRKTDLCLLQESRFNASLHFTLASRQLMGDPLYRCPLAAKQVEEDPPELRPSSSELLRSS 214
            F+VTL +  L  +P S G +F KWK         +G TK   V     TV W   FTF        E    L    L  S+R+  +  G I R GI++++++EY          LLQESR NA L  +L  RQ  GDP ++ P  + +V        PSSS+   SS
Sbjct:   11 FQVTLVLEELRQFPLSHGTIFAKWKLQPQVADPHFGFTKRTQVVRN--TVIWNDRFTFSVKLGAAGERGEELRSCGLRISIRE-EKNIGHI-RHGIIELDLAEYAGLPTVRKNFLLQESRTNAVLSLSLTLRQTSGDPTFKRPFKSVKV------TLPSSSDTQNSS 167          
BLAST of NO20G00110 vs. NCBI_GenBank
Match: XP_021579387.1 (protein FAM102A [Ictidomys tridecemlineatus])

HSP 1 Score: 67.4 bits (163), Expect = 1.000e-7
Identity = 40/148 (27.03%), Postives = 71/148 (47.97%), Query Frame = 0
Query:   49 RSLKFEVTLTIHGLLHYP-QSGRLFVKWKDGQGSYGLTKAVNVSTRDYTVRWEIPFTFLASFRVDNESNILLPRMLHFSVRQTHRRTGAIKRVGILDINMSEYLAAGRKTDLCLLQ------ESRFNASLHFTLASRQLMGDPLYRCP 190
            +  KF+ T T+  L   P  +G LF K +   G   ++ +     ++  VRW   FTF+     +  + +L P +   SVR+    +GA+ ++G  D+N++E+  +G     CLL+        + N+ L  T+    L GDP ++ P
Sbjct:    8 KKFKFQTTFTLEELTAVPFVNGVLFCKVRLLDGGDFVSLSSREEVQENCVRWRKRFTFVCKMSANPATGLLDPCVFRVSVRKVRLGSGALSQLGFADLNLAEFAGSGSTVRCCLLEGYDTKNTRQDNSILKVTIGMFLLSGDPCFKTP 155          
BLAST of NO20G00110 vs. NCBI_GenBank
Match: OAD08475.1 (hypothetical protein MUCCIDRAFT_154927 [Mucor circinelloides f. lusitanicus CBS 277.49])

HSP 1 Score: 67.0 bits (162), Expect = 1.400e-7
Identity = 50/171 (29.24%), Postives = 79/171 (46.20%), Query Frame = 0
Query:   40 FPPLRRASSRSLKFEVTLTIHGLLHYP-QSGRLFVKWKDGQGSYGLTKAVNVSTRDYTVRWEIPFTFLASFRVDNESNILLPRMLHFSVRQTHRRTGAIKRVGILDINMSEYLAAGRKTDLCLLQESRFNASLHFTL--------ASRQLMGDPLYRC-PLAAKQVEEDPP 201
            F  L  + SR + FE++L I  L++ P  SG  +V WK    S+       V  +D+ + W  P   +    V N+  +L    L   + Q        K +G L IN+SEY  +G  T+  LLQ  +FN+++  +L         S Q    P ++  PL+ KQ+ +D P
Sbjct:    5 FTHLFISKSRKVNFELSLIIRDLVNVPLVSGYYYVNWKLRNASHTTGTTERVHIKDHQITWNHPINTMIQL-VINKQQVLNDCELKLDIYQK-----GGKEIGTLSINLSEYAGSGVTTERYLLQNCKFNSTIKLSLRMNIKPDSTSNQPSSYPQFQTPPLSRKQIFKDIP 169          
The following BLAST results are available for this feature:
BLAST of NO20G00110 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22222.11.500e-3547.71hypothetical protein Naga_100312g4 [Nannochloropsi... [more]
SAM00710.11.900e-931.58hypothetical protein [Absidia glauca][more]
CEG83274.19.400e-931.10hypothetical protein RMATCC62417_17227 [Rhizopus m... [more]
CEG65082.19.400e-930.86hypothetical protein RMATCC62417_01946 [Rhizopus m... [more]
XP_023467048.11.600e-831.10hypothetical protein RHIMIDRAFT_118834 [Rhizopus m... [more]
ORE14488.13.600e-830.38hypothetical protein BCV71DRAFT_257978 [Rhizopus m... [more]
XP_005706952.14.700e-834.13hypothetical protein isoform 2 [Galdieria sulphura... [more]
XP_005706953.14.700e-834.13hypothetical protein isoform 1 [Galdieria sulphura... [more]
XP_021579387.11.000e-727.03protein FAM102A [Ictidomys tridecemlineatus][more]
OAD08475.11.400e-729.24hypothetical protein MUCCIDRAFT_154927 [Mucor circ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002535NSK002535Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G00110.1NO20G00110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|671840gene_6218Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100312g4gene8215Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G00110.1NO20G00110.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G00110 ID=NO20G00110|Name=NO20G00110|organism=Nannochloropsis oceanica|type=gene|length=2510bp
CCCCCCTCAAAACCAAAGACAGGAAATGCACATTCCAGGACGTGCAGATG
GCATCACCACTACCACACTTATCTTTCCACAGGATTAAGACTCCCTTTTT
CCACCTGCTGATGTCCTTTTGTATGTTTCAAACATAAAGCATACAGGTAA
CAAGCCAAATCGCAAGCCAACCCCATCTAGACCAAGGCTCCTCCTCCCCC
TCCGCCTTCACCTGATTGGGTCTACATCTAAATCGAGGATCAAGACAATT
AGGCACTATCCCCACTCCTTCTCCTATACTATTTCCTCTTCCGTCTCTTC
TATCTTCTCCCTTCACCCGTCCTCCTCCCGCTCCCTGTCCATCCTTTTTT
CACCTCGCCATGACGCCGATGGCCGCTGCCCGCCGGCCACGAGCCAGCAG
CAGCCTTTCTAGCAGCACCAGCAGCAACAACACTCAAACCAGTTTTGGCA
ACAAGCTAGCTTCCTTCTTTCCCTCTTTTCCTCCTCTACGTCGGGCCTCC
TCCCGCTCACTAAAATTTGAGGTGACTTTGACCATTCATGGGCTTCTGCA
TTACCCCCAGTCTGGCCGACTCTTTGTCAAGgtagaaaggaggaagaaat
ggaagggtagatgagtaatccaggaagattatgcaagaagatttcattat
ctgtatcattgaaatggaagggtagatgagtaatccaggaagattatgca
agaagatttcattatctctatcattctcattccttacctcccttcctttc
ctcctccttacccgcccttatctccagTGGAAAGACGGTCAAGGCAGCTA
CGGACTAACGAAAGCCGTCAACGTCAGCACCCGCGACTACACGgtacacc
ctcctctctctcttcctccctctctcgctacctttcatccgaccatctca
accttttctccttcccttcttcacctttccctttctcacgcagGTGCGTT
GGGAAATCCCCTTTACCTTCCTGGCCTCCTTCAGGGTGGATAATGAGAGC
AACATACTTTTGCCCCGCATGCTGCACTTCTCCGTGCGCCAGgtaggcag
ctgcagtgagagggaggggcggagggagtgagagagagagaggaaagaca
cgcatataggttgcacgcttcgattagttcttgagcgtttcgtttatcct
ctctccctccgtcccttcctccctcctttctttcgtccttcctgaatttg
ttgcagACCCACCGGCGCACGGGAGCCATTAAGCGCGTGGGTATCCTGGA
TATCAATATGTCCGAGTACCTCGCCGCGGGGAGAAAGACTGACTTGTGCC
TGCTACAGgtaggttccctccctccctccctccctccctccctcccccct
tcttcgatatctttgttcccgaacctagctggcttactcgaggtaatcaa
tgtctcttttctctctccctcattttatctccttctccgtatttgacaat
atcatgctatagcatcgatcctccatgtcaccttccctccctccttccct
ccctccatccctccctccttccctccttccaactcaccccctctgcagGA
GTCCCGCTTCAACGCCTCCCTCCACTTTACCCTCGCCTCACGCCAGCTCA
TGGGCGACCCGCTTTACCGATGCCCATTGGCTGCTAAACAGgtggaggag
gagggagggagggagggagggagggaggaaggaagggagatgcacatggg
cctatggctccatttcgcttctgccactaagccccttctcctccctccct
ccctccctccctcccttcttagGTGGAAGAAGACCCCCCCGAGCTGCGTC
CGAGCTCTTCAGAGCTTTTGCGATCCTCCTGGGGCCGGGACGGAAACAGC
CTCTTGTCGTCGTCGTCGTCGTCAGGGGGGGGAGGGAGGGAAGGAGGGCG
GGTGCTGAGGGTAGCGCCACGAGCAGGGACAGGAGCAGAgtatgttgcaa
gggatagagggaagggagggagggatggagggaggaaagggagggaggga
aggagggacgatgtgtctctgttggccgagggagcaaggtcaggacaaag
tcttgaaggttctttttccccacctattttttactcacttccttccttct
ctacagGCACGTCTTTCCTCCCTTTCCCACTACTTCCAGCAATCCTTCTT
CTCCTTCTTCCTCCTCTTCCTATTCCTCCTCTTCGCCTTCTCCCTCCCAC
CATCATGACCGCCTCTATGCCCGCTCCGTCTCCCTTCCCCTGGCCGCCCG
CCCGCCCTCTCTCCTTTCCTTGGATGGGAGAGAGAGGCGCGCAGACACCT
TTAACTATTCTTCCTACAAGCGGGAAACGGCCGGGGAGTGTCGGCAGAGG
GATAGCATGGAGGAATGGAAGGGGAAAGGAAGGGAGGAGGAGAAGGAGAA
GGAGGAGGAGGGTGAGCGTATCGGGGAGGAGGAGATTGAGACATGAGGGG
GCGACTGGGGAGCTCAGGAAGAAGGATAACATGACGCGATAGGAAGAAAG
AAGAGAAGAG
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protein sequence of NO20G00110.1

>NO20G00110.1-protein ID=NO20G00110.1-protein|Name=NO20G00110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=363bp
MTPMAAARRPRASSSLSSSTSSNNTQTSFGNKLASFFPSFPPLRRASSRS
LKFEVTLTIHGLLHYPQSGRLFVKWKDGQGSYGLTKAVNVSTRDYTVRWE
IPFTFLASFRVDNESNILLPRMLHFSVRQTHRRTGAIKRVGILDINMSEY
LAAGRKTDLCLLQESRFNASLHFTLASRQLMGDPLYRCPLAAKQVEEDPP
ELRPSSSELLRSSWGRDGNSLLSSSSSSGGGGREGGRVLRVAPRAGTGAE
HVFPPFPTTSSNPSSPSSSSSYSSSSPSPSHHHDRLYARSVSLPLAARPP
SLLSLDGRERRADTFNYSSYKRETAGECRQRDSMEEWKGKGREEEKEKEE
EGERIGEEEIET*
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Synonyms
Publications