NO20G00080, NO20G00080 (gene) Nannochloropsis oceanica

Overview
NameNO20G00080
Unique NameNO20G00080
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3156
Alignment locationchr20:28490..31645 +

Link to JBrowse

Properties
Property NameValue
DescriptionAnkyrin repeat protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:28490..31645 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0034220ion transmembrane transport
Vocabulary: Molecular Function
TermDefinition
GO:0005216ion channel activity
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR030288TRPA1/painless
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
[Close]
BLAST of NO20G00080 vs. NCBI_GenBank
Match: EWM22229.1 (ankyrin repeat protein [Nannochloropsis gaditana])

HSP 1 Score: 103.2 bits (256), Expect = 1.900e-18
Identity = 140/206 (67.96%), Postives = 162/206 (78.64%), Query Frame = 0 
Query:    1 MSTPTGRPPPSPRVNFGNVTSLRVGDSKHTIMHQAAERGNLEEMQKAAAHDPSSVGSKGHMGRTPLMCAARWGQLQAIEFLLINGALIDDVDVAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVLLAKRSARSHESRVIDELLQEAESTYDMNNQCPPPLPFLP 207
            M+ P GRPPPSP ++      L   + +H+ +H AAERG+LEE++ AA  D   V  KGHMGRTPLMCAARWGQLQA++ LL  GA +++ DVA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR LLA+R+A + E  VI+ LLQEAE+T ++     PP   LP
Sbjct:    1 MADPPGRPPPSPTMS----QRLLGKEKRHSAIHSAAERGDLEEIKAAAILDSKVVNLKGHMGRTPLMCAARWGQLQAVQLLLHLGAPVEETDVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRALLARRAAVTAEVGVIEVLLQEAEATRELEKGSVPPRTPLP 202
The following BLAST results are available for this feature:
BLAST of NO20G00080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22229.11.900e-1867.96ankyrin repeat protein [Nannochloropsis gaditana][more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL021nonsL021Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002531NSK002531Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G00080.1NO20G00080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO20G00080.2NO20G00080.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|86600gene_6216Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100724g3gene8211Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G00080.1NO20G00080.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO20G00080.2NO20G00080.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G00080 ID=NO20G00080|Name=NO20G00080|organism=Nannochloropsis oceanica|type=gene|length=3156bp
TCCTCCTCCTTCTTCAACACAGCAGCTTGACATATGGCGTCTTTATTTGG
CCCAATGTGAGGGGACAACAGGGAGAGCTATACATGATTGCATGAAAGAC
AGCATGCATCACAAGGCCTTCAAGCTCAAGACATGTACGCTGCCTGGCTG
GGGAACAGCAATAGGGTGGATTAAAAGTCGCTCAGCGCTCAGCAGGTTCA
CCAAGGTGCTGCCTTGCTGTCAAGGGATCCACACCTCCTGCAACAAATGG
CTCTCTCTACTCCGGGCGCGGCTCGCCCCACACACAGTGTTCGATCCATA
CTTAGAGGACTATAATTTTCATGGAGAGCTAGGGACCAAAAGAGAGGGAG
GCACTCAGCCAAGCATGGATTTCAGCAGCACCTCAATCCCTCACTCACAA
TTTTTTTTCCAACCTAATCCACACCCTACATCCATACTTCACACATAACG
ATAGACGACAAGGAAGCCATGTCGACACCCACTGGCCGCCCACCACCGTC
TCCCCGAGTAAATTTCGGGAATGTCACGTCTCTGCGCGTGGGAGACAGTA
AGCACACAATCATGCACCAAGCAGCAGAAAGAGGCAACCTGGAAGAGATG
CAGAAGGCGGCAGCACACGATCCAAGCAGTGTTGGGAGCAAGGGACATAT
GGGGgtgagtatatttttacatgtttgtgtatgcttgaggtggggtggtg
ggagagaacagagaggaaatgatcgatttgacgacccaatccatccccta
cgcgtacaacagCGAACTCCCCTCATGTGCGCCGCCCGCTGGGGCCAGCT
TCAAGCAATAGAGgtgagcacacagacacacacatatagctattgctgct
atgtgtcgttctttttctgtccctccctcgtcttccaccactcgcctctt
aggcactgaagctttcctccctccctccctccctccctccctccctccct
acctccctccctccctcccttcccccagTTCCTCCTCATCAATGGCGCCC
TCATCGATGACGTGGATGTAGCGCAGCGCACGGCCTTACACTGGGCCGTG
CAGTACGGGCGGGAAACGGTGATGGAGAGCTTGCTTAGGCATGGGGCCTA
CGTTGGGCACAAAGATTCCAGCGGGGCAACGgtgaggcttggatcgaatc
agtacaaaggcatatatgtacatatgaacgtatgcattattattcaaccc
cattttctttccaaacaaaataacatgacagCCTCTGCACTACGCTGTCT
CGTACCTCCAGCCCAGGGCAGTCAAGCTACTACTCTCCCGCGgtacgttt
ccttgctccctctcttcccttcaccttcccttcccctatccccttcacct
ctcccacgactcttctttccaccccttatcgaccacttatctagtccctt
cactccctctatccctcgtgcctccagGCGCCTCCCCCTTTGACAGGGAC
ATGAATGGCGACATCCCTCGCGTCCTCCTTGCCAAGCGCTCGGCCCGAAG
CCACGAAAGTCGCGTCATTGATGAGCTGCTTCAGgtacggagggagagga
ggagagagggaaggagggaagaaaggaagaacaaaggcacaacagatgtg
gggggctgagtaaacgaggttctcctgacgcgccctctcctctccttgcc
ccttcttcctcttccccatccaccagGAGGCGGAATCTACGTACGACATG
AACAACCAGTGCCCCCCGCCCCTTCCCTTCCTTCCTCCTCCCCCCACCTC
TACCTCCCCTCGCCCTATCTCCCAGCCCACCACCTTCCCTTCCTCCTTCC
CTTCCTCCTTTTCCAACTCTGACCCCGCCACCTCCTCCTCCCCAAATGCC
CTTCCTCTCGGCCAGCTTGCCCTCCCTGTCACTATCATCCCCTCCACCGT
CCCTCCTCGGTCCCTCCCTCTTCCCCCTCCTCCTCCCTCCCTCCCCATCT
CCATCCCTACTCCCTCTCCTCCTCCGCGCGTGGACATCTACCAGCTCGCC
CTCCGCCAGCAGCAAGTCTACCAGCAGCAGAACCAGCAGCAGCACAAGCA
ACTTGTGGAAGGAGGGCTGGGGGGAGGAAGCGAGGGAGGATTGGAAGCAG
TGCAGCTATCGGCAGACGATGCCTCTGGTCTAGAGCCTAAAGCCATGGCA
ATGGAAGgtgagggaaggagggaaggaaggaggagtgaaaggagggaggg
gtgtcaggttatgcgtggggtggatactcaacttgcactaggaggcagca
ctgctcacgttctccctgtcctccccttcctccatccctccctcgacaca
gATTTTGCTTTCCCTGACGACGAGACGTTCGAGTTTATGATGGACGAGGT
GGCCGGGGAGAGAGgtgcgaaggagggagaggaaggggtagagggggtga
gggagggcgactggtaggcggttggaaaggtcactttcttacatctgcct
ttctcactcgaaacagACTTCAACAACGCGCAGCAGCACCAGGAGCCGCC
CTCATGTCAGCAGCAGCAGCAGCAGTATCACATGCAGCAAGATCATTAAC
AATTCGACTCGCAGCAGCAGCAGCACCGGTCCCTCCGGACCTTCACTTAA
TGCGTCAAGAGATATTGTAAAAGCTTTGCTGCGTCATTGCCTTGAGAATG
AGTGCCATTGTTGCAGAAATGTGTATGAAAATAACAAAAAAGTGTGAATT
CAGAGGGACAGGAGCGTCTCAGACAAACATTAGAGCCAGCAGGCGAGCAG
TTGGCGAACTGCTGCGATCCAGAAGCTGGCTGCTATAGCACGAGGGAAGA
AATCAACAGAGTGGGAGGGAGGGGATAGAGATGAAAGCGAATCAGAAAGG
GAAAGGAGTGTGAAAAAATGAGAAATTTCAAAAGCAGCGCTCGAGCTTGC
GGCCACACTATATAACTTAAAACCCATGTCCCGATGAATCGTGACAGACA
CATTGTGTACCAACATCAAAAACCAGAAGCTTTATGCCTCAGGCGCCATT
GAAAAGTAATCATGATTGCTTCGTCGGCTTCATCTCCTTTGGGTGATGAG
GCAGGGCAGAAGCGCCAATTTTGCCGGGATCAAGAAACAAGTTAGCGAAG
GCACAGACACATTGACATTGTACAACAAGGAAGATAAGAGTTACTTGTAT
GCCCTA
back to top

protein sequence of NO20G00080.1

>NO20G00080.1-protein ID=NO20G00080.1-protein|Name=NO20G00080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=395bp
MSTPTGRPPPSPRVNFGNVTSLRVGDSKHTIMHQAAERGNLEEMQKAAAH
DPSSVGSKGHMGRTPLMCAARWGQLQAIEFLLINGALIDDVDVAQRTALH
WAVQYGRETVMESLLRHGAYVGHKDSSGATPLHYAVSYLQPRAVKLLLSR
GASPFDRDMNGDIPRVLLAKRSARSHESRVIDELLQEAESTYDMNNQCPP
PLPFLPPPPTSTSPRPISQPTTFPSSFPSSFSNSDPATSSSPNALPLGQL
ALPVTIIPSTVPPRSLPLPPPPPSLPISIPTPSPPPRVDIYQLALRQQQV
YQQQNQQQHKQLVEGGLGGGSEGGLEAVQLSADDASGLEPKAMAMEDFAF
PDDETFEFMMDEVAGERDFNNAQQHQEPPSCQQQQQQYHMQQDH*
back to top

protein sequence of NO20G00080.2

>NO20G00080.2-protein ID=NO20G00080.2-protein|Name=NO20G00080.2|organism=Nannochloropsis oceanica|type=polypeptide|length=433bp
MSTPTGRPPPSPRVNFGNVTSLRVGDSKHTIMHQAAERGNLEEMQKAAAH
DPSSVGSKGHMGRTPLMCAARWGQLQAIEFLLINGALIDDVDVAQRTALH
WAVQYGRETVMESLLRHGAYVGHKDSSGATPLHYAVSYLQPRAVKLLLSR
GASPFDRDMNGDIPRVLLAKRSARSHESRVIDELLQEAESTYDMNNQCPP
PLPFLPPPPTSTSPRPISQPTTFPSSFPSSFSNSDPATSSSPNALPLGQL
ALPVTIIPSTVPPRSLPLPPPPPSLPISIPTPSPPPRVDIYQLALRQQQV
YQQQNQQQHKQLVEGGLGGGSEGGLEAVQLSADDASGLEPKAMAMEGEGR
REGRRSERREGCQVMRGVDTQLALGGSTAHVLPVLPFLHPSLDTDFAFPD
DETFEFMMDEVAGERGAKEGEEGVEGVREGDW*
back to top
Synonyms
Publications