NO20G00010, NO20G00010 (gene) Nannochloropsis oceanica

Overview
NameNO20G00010
Unique NameNO20G00010
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length992
Alignment locationchr20:1168..2159 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:1168..2159 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO20G00010 vs. NCBI_GenBank
Match: EWM22240.1 (hypothetical protein Naga_100597g5 [Nannochloropsis gaditana])

HSP 1 Score: 149.4 bits (376), Expect = 5.600e-33
Identity = 76/96 (79.17%), Postives = 89/96 (92.71%), Query Frame = 0 
Query:    1 MRVSFALFALVAAIIMSISSAFMPPTPRMARQARTVTKLSPMDVIPAESFQAASDVLIAAKDTDFGGYTGPIAGLITLGALIIVLAPPLTSQAKEE 97
            MRVSFAL AL+AA+I+S+SSAF+PPTPRM RQARTV+K++PMDV+  ES QAASDVL+AAKDTDFGGYTGPIAGLITLGALI+VLAPPLT++  EE
Sbjct:   80 MRVSFALVALMAAVILSLSSAFVPPTPRMTRQARTVSKMTPMDVVSTESIQAASDVLLAAKDTDFGGYTGPIAGLITLGALILVLAPPLTTKPTEE 175
The following BLAST results are available for this feature:
BLAST of NO20G00010 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22240.15.600e-3379.17hypothetical protein Naga_100597g5 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR020ncniR020Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR067ngnoR067Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO20G00010.1NO20G00010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|86442gene_6208Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100597g5gene8199Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO20G00010.1NO20G00010.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO20G00010 ID=NO20G00010|Name=NO20G00010|organism=Nannochloropsis oceanica|type=gene|length=992bp
ACAGACCACTACCAACTCCACAAGTCAAAGATGCGGGTTTCCTTCGCCCT
TTTCGCCCTCGTGGCCGCAATCATCATGAGCATCTCTAGCGCCTTCATGC
CCCCCACCCCTCGCATGGCTCGCCAGgtacgccgggaggcaagcatgaaa
gatgaccttggcgacgtgtcgtgtgtgtgtgtttgtcccttccacgtccc
tcattcgtctgttctcccttaattatctatgccttgcacgtctaggcacc
tactcctacgccaacagatttctgatccaccctcgctagttgacgccctt
tcctcttatcaccctgtccctctttttccatcctcgcccacagGCCCGCA
CGGTGACGAAGCTGAGTCCCATGGACGTGATTCCCGCGGAGAGCTTTCAG
GCGGCCTCGGACGTGTTGATCGCGGCAAAGGACACGGACTTCGGCGGCTA
CACAGGCCCCATTGCCGGTCTCATTACTCTCGGCGCCCTTATCATCGTGC
TCGCCCCCCCTCTTACCTCCCAGGCTAAGGAGGAGTAAGGGAGGTGAAGG
TTAAGAAGGACCAAAAAGGCTCATTGAAGGAGTAAGGTGAGAGGGGCAGC
GCGCTGCTGCCCAGGGGGCGTTGAGAAGGGACATTGCGAAAACGAGGACG
GCAAGGGTATCACCATGGAAGAAAGGAGATGCAGGAGTAGTAGCAAACGC
GTGTGGGGGTTGGTAGCGGGGGGTTGTCTTGTTCTGGGTGTCTTTATCGG
AAGCGAAAGGGTGTCATTGGCCTACAGGGGGGGGACGAGGTGGCGAAACA
GACAGGACTAGGAGGCAGGCATAGCACGGATTTCCTTTCCTCCAGGCCTT
GGCTTGTTCGTCTTTAGAGCGCTCCCAGAGCGCTTCCACTTCGTCGTCGT
CGTTGGTGCCGGTACATGAATTAAGGAACGGAAAAGAACGAGCGAAGTTA
GAAAAGAGACTACAAATATCGCACGTCACACCTTCGTGCCCC
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protein sequence of NO20G00010.1

>NO20G00010.1-protein ID=NO20G00010.1-protein|Name=NO20G00010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=97bp
MRVSFALFALVAAIIMSISSAFMPPTPRMARQARTVTKLSPMDVIPAESF
QAASDVLIAAKDTDFGGYTGPIAGLITLGALIIVLAPPLTSQAKEE*
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Synonyms
Publications