NO19G02710, NO19G02710 (gene) Nannochloropsis oceanica

Overview
NameNO19G02710
Unique NameNO19G02710
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1967
Alignment locationchr19:825264..827230 +

Link to JBrowse

Properties
Property NameValue
DescriptionWW/Rsp5/WWP
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:825264..827230 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036020WW_dom_sf
IPR001202WW_dom
Homology
BLAST of NO19G02710 vs. NCBI_GenBank
Match: XP_009515364.1 (hypothetical protein PHYSODRAFT_471379 [Phytophthora sojae] >EGZ28089.1 hypothetical protein PHYSODRAFT_471379 [Phytophthora sojae])

HSP 1 Score: 73.2 bits (178), Expect = 2.000e-9
Identity = 57/178 (32.02%), Postives = 83/178 (46.63%), Query Frame = 0
Query:  239 SFPPAAATSSVPLSPSEA---AAAVWVELVDEGTGRVYYYDNVSGATRWSMPQAFQGESRTAW--PE-----------------------------------GG----LHGGLQPPVISAYDRDVRILSHFFDPSTLAANREEAKRKKAEM-CTGVDWRQVKDKKKAEKKRRGNEWLY 372
            S PPAAA + V    ++A   A A W + VD  T R YY++ V+G T+W+ P A        W  PE                                   GG     + G+ P      DR  R +SHFFD + L  NREEA+R+K ++    +DW+++  +KKA+K+++ NEWLY
Sbjct:  215 SAPPAAAAAHVDGDGADAPRTAKAEWQQHVDAQTQRYYYHNEVTGVTQWNKPDAPIVSGLAIWIPPEESESDSTAAGRKTVSGVNYVARAKFNRLTGKYEQLGGDEYWQNAGIAP------DRAGRQMSHFFDMTELEKNREEARRRKEQLKRKHIDWKKITAEKKAKKQKQRNEWLY 386          
BLAST of NO19G02710 vs. NCBI_GenBank
Match: XP_002906334.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY65735.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 69.7 bits (169), Expect = 2.200e-8
Identity = 47/154 (30.52%), Postives = 71/154 (46.10%), Query Frame = 0
Query:  254 SEAAAAVWVELVDEGTGRVYYYDNVSGATRWSMPQA------------FQGESRTAWPEGGLHGGLQ-----------------------PPVISAYDRDVRILSHFFDPSTLAANREEAKRKKAEM-CTGVDWRQVKDKKKAEKKRRGNEWLY 372
            +  A A W + VD  T R YY++ V+G T+W+ P A               E  ++ P      G+                             A DR  R +SHFFD S L  NREEA+R+K ++    +DW+++  +KKA+K+++ NEWLY
Sbjct:  230 TRTAKAAWQQHVDAQTQRYYYHNVVTGVTQWNKPNAPVXXXXXXXXXXXXXELDSSGPSQKTVSGVNYVAQAKFNRLTGKYEQLGGDEYWQSAGMASDRAGRQMSHFFDMSELEKNREEARRRKEQLKRKNIDWKKITAEKKAKKQKQRNEWLY 383          
BLAST of NO19G02710 vs. NCBI_GenBank
Match: XP_005853613.1 (hypothetical protein NGA_0714320, partial [Nannochloropsis gaditana CCMP526] >EKU22747.1 hypothetical protein NGA_0714320, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 68.9 bits (167), Expect = 3.700e-8
Identity = 53/150 (35.33%), Postives = 76/150 (50.67%), Query Frame = 0
Query:  241 PPAAATSSVPLSPSEAAA-AVWVELVDEGTGRVYYYDNVSGATRWSMPQAFQ-GESRTAWPEGGLHG------------------------GLQPPVISAYDRDVRILSHFFDPSTLAANREEAKRKKAEMCTGVDWR-QVKDKKKAEKK 364
            P A + +S PL  SE A    WV+L +EGTGR +YY+ VS   +W +P  +Q GE    W EGG  G                         LQP + +  +RD R+L H+FD STL  NRE+AK+K+     G   + Q  + K++++K
Sbjct:    6 PDADSPNSPPLPGSEPALDETWVKLCEEGTGRAFYYNVVSQTRQWEVPLGYQVGE----W-EGGRGGKREGREATLFFLCPRDSLPLSPLFSLQPRLPAPCERDGRMLRHYFDLSTLPGNREDAKKKEEGTRRGKALKVQCGESKRSDEK 150          
BLAST of NO19G02710 vs. NCBI_GenBank
Match: XP_005852479.1 (hypothetical protein NGA_0714310 [Nannochloropsis gaditana CCMP526] >EKU23353.1 hypothetical protein NGA_0714310 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 68.9 bits (167), Expect = 3.700e-8
Identity = 53/150 (35.33%), Postives = 76/150 (50.67%), Query Frame = 0
Query:  241 PPAAATSSVPLSPSEAAA-AVWVELVDEGTGRVYYYDNVSGATRWSMPQAFQ-GESRTAWPEGGLHG------------------------GLQPPVISAYDRDVRILSHFFDPSTLAANREEAKRKKAEMCTGVDWR-QVKDKKKAEKK 364
            P A + +S PL  SE A    WV+L +EGTGR +YY+ VS   +W +P  +Q GE    W EGG  G                         LQP + +  +RD R+L H+FD STL  NRE+AK+K+     G   + Q  + K++++K
Sbjct:   14 PDADSPNSPPLPGSEPALDETWVKLCEEGTGRAFYYNVVSQTRQWEVPLGYQVGE----W-EGGRGGKREGREATLFFLCPRDSLPLSPLFSLQPRLPAPCERDGRMLRHYFDLSTLPGNREDAKKKEEGTRRGKALKVQCGESKRSDEK 158          
BLAST of NO19G02710 vs. NCBI_GenBank
Match: GAX92907.1 (Hypothetical protein PINS_000814 [Pythium insidiosum])

HSP 1 Score: 65.9 bits (159), Expect = 3.100e-7
Identity = 47/150 (31.33%), Postives = 68/150 (45.33%), Query Frame = 0
Query:  261 WVELVDEGTGRVYYYDNVSGATRWSMPQAFQGESRTAW-----PEGGLHGGLQ-PPVIS-------------------------------AYDRDVRILSHFFDPSTLAANREEAKR-KKAEMCTGVDWRQVKDKKKAEKKRRGNEWLYK 373
            W + VD  + R YY++ V+G T+W  P+     +   W     P    H   +  P +S                               A DR+ R + HFFD S L  NREEAKR K+A     VDW++V  +KKA K+++ NEWL++
Sbjct:  272 WEQHVDPHSQRYYYHNIVTGVTQWQRPEGPIVSALADWIPPEAPTDDDHAERRHQPTVSGVNYVATAKFNRLTGKYEQLGGDEYWQSMGVATDREGRQMGHFFDTSQLEKNREEAKRIKEALKRKNVDWKKVAAEKKARKQKKQNEWLFQ 421          
The following BLAST results are available for this feature:
BLAST of NO19G02710 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
XP_009515364.12.000e-932.02hypothetical protein PHYSODRAFT_471379 [Phytophtho... [more]
XP_002906334.12.200e-830.52conserved hypothetical protein [Phytophthora infes... [more]
XP_005853613.13.700e-835.33hypothetical protein NGA_0714320, partial [Nannoch... [more]
XP_005852479.13.700e-835.33hypothetical protein NGA_0714310 [Nannochloropsis ... [more]
GAX92907.13.100e-731.33Hypothetical protein PINS_000814 [Pythium insidios... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR099ncniR099Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G02710.1NO19G02710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|613652gene_10945Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G02710.1NO19G02710.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G02710 ID=NO19G02710|Name=NO19G02710|organism=Nannochloropsis oceanica|type=gene|length=1967bp
ATGCGCGGTCTCAAAGCCTTTCAGAGGAGGGGTGCAGACACAGAGGAGGA
GGAGGAGGAGAAGGAGGAGGAGAAGAAGGAGGAGAAGGAGGAGGACGCGT
TAGCAGCAGTTGCAACAAAGAAGCGGGGCCCGGGTGACGATAATCAGAGC
AACGACCACGACGAGGAGAAGACTGCAAATGAGGACACGGGGAGTCCAGC
AGGAGCAGGGCTGGAGGAGGGAGAGCTATGCGACGACGATAAAGAAGCGA
TTCAGACAACAGTATCTGCAGCAATAGCAGCGGCTATCGAGGAGTGGGGC
GATAGGCAAGGTGAGGAAGAGGAGGAAGAGGGAGAGGGGGAGAAGAAAAA
GCGAGAAGATGGAAACGACGGCAAGGAGAGTGCGCCACTTGTAGCAGCAG
GTGGGGAAAATGAAGAGGAGGAGGACGAGGATGTTGAGGCTTCACTTTAT
CCCCCGGCCCCACCATCCGGCCTGCTTCCTCCGTTTTGGGCCGCCGCGCA
AGACCCCTCTACGAATGCCACCTATTATTTCCACCAACAGACGGGCGTGC
GCTCCTGGGAACCGCCACCATTACTTCCTTTGTCGCCCCCTCACACTTAC
CCTGGGCAGGTCCCGGTTGCCCCTCCCTCTGCACCACAGCTTCCCCCCGA
GCTGGCCAAGCTACACGCGGCGTTAGACAAGgtaggtccaaggggaagaa
aagacggtaatgcgatggggaagacggaagggaaattttaacaggcttga
cccggagtcctaagtgatgctgatctgagacaggcatcgaggaaggaagg
cgtcccttctttttctccgactccctcatttgagcacctttttcatcgct
attccgcctttttccagctcataacagcatcattttccctcccttcattt
tgctattcaatcttccctaccagGTGGACAGCACCCTATCTAATGCCGAC
ACGTTCTCGTTTCCCCCTGCTGCCGCCACATCCTCTGTCCCCCTCTCGCC
CTCCGAGGCGGCGGCGGCCGTCTGGGTTGAGCTCGTGGATGAGGGCACGG
GGCGGGTGTACTATTACGACAATGTCTCGGGAGCGACCCGATGGTCCATG
CCCCAGGCCTTCCAGgtctgtgggctggggagtgggatagtttccttgct
ctttcccttgtctgctttcattctttatccgtgcctctttttgtctctgt
ctctgtatctacccaacaaatacttgtacgaatagaagtacctgagattc
tcgatccctcccacttaacctcctcccgcctaccttcctttctcagGGCG
AAAGTAGGACAGCCTGGCCAGAGGGAGGCCTTCACGGAGGCCTTCAGgta
cggcgaccgaatggagaaggatagaggggaagggcgggagggaggacagg
gtagtgagaggggagttcatttcgaggcgtcaagagtgtgtatatagcca
ctgctttggggaagcagtatgcgagcgagccctctcgtgagaggggacca
cattggtggaatcggggggaaggggaggaggaggtatgaaacaaagtgag
aagtgaatggatagcagaagggttgagcaaaatttgattcaaccactctc
acccctgactgacttcttccctctccccctcccctctagCCTCCTGTCAT
TTCCGCCTACGACCGCGACGTACGGATTTTGAGCCACTTCTTCGACCCTT
CCACTCTCGCGGCTAACCGGGAGGAGGCCAAGAGGAAGAAGGCGGAGATG
TGCACAGgcaggtggaagaggaaccacggatatgcagcaaagggaaggga
agctagaaaggcagtaggcgtctcgttgactcacctattgactcgtcttc
tttttccctcgctctctttgtcgccctccgttcgtagGCGTTGACTGGCG
CCAGGTGAAGGATAAGAAGAAGGCGGAGAAGAAGCGCAGGGGAAACGAAT
GGTTGTACAAAGGATGA
back to top

protein sequence of NO19G02710.1

>NO19G02710.1-protein ID=NO19G02710.1-protein|Name=NO19G02710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=374bp
MRGLKAFQRRGADTEEEEEEKEEEKKEEKEEDALAAVATKKRGPGDDNQS
NDHDEEKTANEDTGSPAGAGLEEGELCDDDKEAIQTTVSAAIAAAIEEWG
DRQGEEEEEEGEGEKKKREDGNDGKESAPLVAAGGENEEEEDEDVEASLY
PPAPPSGLLPPFWAAAQDPSTNATYYFHQQTGVRSWEPPPLLPLSPPHTY
PGQVPVAPPSAPQLPPELAKLHAALDKVDSTLSNADTFSFPPAAATSSVP
LSPSEAAAAVWVELVDEGTGRVYYYDNVSGATRWSMPQAFQGESRTAWPE
GGLHGGLQPPVISAYDRDVRILSHFFDPSTLAANREEAKRKKAEMCTGVD
WRQVKDKKKAEKKRRGNEWLYKG*
back to top
Synonyms
Publications