NO19G02400, NO19G02400 (gene) Nannochloropsis oceanica

Overview
NameNO19G02400
Unique NameNO19G02400
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1898
Alignment locationchr19:698342..700239 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:698342..700239 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO19G02400 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G02400.1NO19G02400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO19G02400.2NO19G02400.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|162239gene_7641Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G02400.1NO19G02400.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO19G02400.2NO19G02400.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G02400 ID=NO19G02400|Name=NO19G02400|organism=Nannochloropsis oceanica|type=gene|length=1898bp
CCTGTCCCGCCTCTCTTTCAAGGTGCCTCCTCCTGCCCCCCTGCCCCCCT
CCCTCTCTCCCTGCCTTCCTTCCTTCTTGTTTCAACACCTTTCACACCTT
CCACGTCTTTCGTCCACTGCCCCTGCCCGTGTTACTGCTGCCGCTGCTTT
CCAACTTCTCTTTCATTTCGCATTTCATGTCTGTATTTTCTTCATTCTCG
CGGTCACTATTATCTCTTGTCTTTTACCTTTCTTTCCTTAAATGCTCCAT
TAAAACCCCGAGCAAGTCTCCGCTGAACTTTCCTCGGGCCTTTCTTCCCT
CCCTCCTTCCCTGTTCCCTCTTTCCTTCCTTTTCACGAAGCACAACCCGT
TAAGGTGGCCAATGCCTCCAAGTAAGCCCTATCAATAGCAAAGGCTTTGA
GTGCGATTTTAATTTCCTCAGTCTTGATTCCACCGTCTACAGTCTTACTT
CGTGGACTTGTGTCGTCTGTTTATGTATCACCGGTAGTCTGCCGAGCCAT
GGAAATGCGGTGCGTGGTCTGACCCTAAAGCGACGACGACTAGAAAATCA
ATGAGTTTTATAGGTGGAGGATAACGGTGGGGCTGTGAGTGAATGGTTAT
TGTCAGgtaatcgatgaaaggcgagggggagaggaggggggagagaaagg
gcagagggacgaaaaatagtttgtcgcttaggcatgaacggtcgcatacg
actgataagtcacggtcaggtaatgacatttgcctctcccggctcattca
ctcgactttttactcacaacatgtataacctacccgcacagGCAGGAGAT
AACGTGGGCACGTACCAGACAAGACTTCAAGCAAGGCCCACCCATTTGTT
GATTTTGCTACCAAGAATCTCCGAGGGTGGGGTCAAGGCTGAGTCTTGGA
ACGCAAAGAAGGAAGCCCGAGCAACAGGGGAAGAAACGGTTTCTGGCGTC
CAGCCGTTGGCCAAGGCTCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCATTACCATCA
CCCGCCGGGCCGTGGCCATGGGGGAAGAAAGACTGACGCCTCAACAGAAG
GCAGCGAGGACCAAGGCAAAAAAGAACACCCTCCCTCCTTCCAACTGTCC
TTCCCTCCCACCCTCCTACCCTCCTTCCACACCTCCCCGCGTCCCCCACT
ATCAAGCCCACACCGGGCACAATAACGCCCGTCGAACGGGCCTTTTCCCC
TTTTCTTCCCCACCTCCCTCCCTCCCTGTCCGCGCGCAGGAGCCGCTGCA
GCAGGGACAAACGCATAGACAGGTGAAGGGAGACGCGGAAGTGATGGACG
GTGGCAAGGGAGGAAGGGAGGCAGGGAGGGAGGGAGGGGGGCCGGGGGGC
AGGAGGAGGCAGACCTTGAAAGAGAGGCGGGACAGGGTGGCCTCCGTGTT
GGAGGGTGTGGTGAAGGACAGCTTTCAGAGTGAGGAAAAGGAGAAGATAT
TCCGGGGGAGGGTGATGGGCATGGCCAGGAGGAGGGGGAGGAAGGCAGGG
AGGAGAGGAAGGAAAGGAGGGGAGGAGAGGAAGGAAAGGGGGGGAGGAGA
GGAAGGAAAGGATGATGATGGAGGAGCAGGAAACGGTGGTGACACCTTTT
GCATCAGCAGCAGCCACAGCAGCAGCGCCCTTTATTCCGCTGGATTGGAT
CTGTCCAGGATATTCCTCGCGACGTTCATGACCACCCTCAGCCATTTTCC
CCTTCCAAAACCCCTGATCGCTCCATCCCTCCCTCCCTCCCGCCCTCCCT
CCCGCCCTCCCTCCCTCCCTCCCTCCCTCCCGCCCTCCCTCCCTCCCTCC
CCCACGCCCAGGCTGAGTTGGCACGCTGGGACCTCTGGGTGGACTTGA
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protein sequence of NO19G02400.1

>NO19G02400.1-protein ID=NO19G02400.1-protein|Name=NO19G02400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=277bp
MGEERLTPQQKAARTKAKKNTLPPSNCPSLPPSYPPSTPPRVPHYQAHTG
HNNARRTGLFPFSSPPPSLPVRAQEPLQQGQTHRQVKGDAEVMDGGKGGR
EAGREGGGPGGRRRQTLKERRDRVASVLEGVVKDSFQSEEKEKIFRGRVM
GMARRRGRKAGRRGRKGGEERKERGGGEEGKDDDGGAGNGGDTFCISSSH
SSSALYSAGLDLSRIFLATFMTTLSHFPLPKPLIAPSLPPSRPPSRPPSL
PPSLPPSLPPSPTPRLSWHAGTSGWT*
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protein sequence of NO19G02400.2

>NO19G02400.2-protein ID=NO19G02400.2-protein|Name=NO19G02400.2|organism=Nannochloropsis oceanica|type=polypeptide|length=381bp
MNGRIRLISHGQAGDNVGTYQTRLQARPTHLLILLPRISEGGVKAESWNA
KKEARATGEETVSGVQPLAKAPSSSSSSSSSSSSSSSSSSSSSSSITITR
RAVAMGEERLTPQQKAARTKAKKNTLPPSNCPSLPPSYPPSTPPRVPHYQ
AHTGHNNARRTGLFPFSSPPPSLPVRAQEPLQQGQTHRQVKGDAEVMDGG
KGGREAGREGGGPGGRRRQTLKERRDRVASVLEGVVKDSFQSEEKEKIFR
GRVMGMARRRGRKAGRRGRKGGEERKERGGGEEGKDDDGGAGNGGDTFCI
SSSHSSSALYSAGLDLSRIFLATFMTTLSHFPLPKPLIAPSLPPSRPPSR
PPSLPPSLPPSLPPSPTPRLSWHAGTSGWT*
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Synonyms
Publications