NO19G02380, NO19G02380 (gene) Nannochloropsis oceanica

Overview
NameNO19G02380
Unique NameNO19G02380
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3411
Alignment locationchr19:684248..687658 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:684248..687658 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO19G02380 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004579NSK004579Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G02380.1NO19G02380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G02380.1NO19G02380.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G02380 ID=NO19G02380|Name=NO19G02380|organism=Nannochloropsis oceanica|type=gene|length=3411bp
ATGGAGGTAGGCAACAAAAGTGAAAACACGGCTGGCACCGTTTCGCCTGC
TGCCGCCGCTGCTGAGAACCTCTTCATTCACCGTGCTGCTGTCGATGGCA
GCGGAGAGAAAGAAGGAGCAGCTGTAGCACCGACTCAAACCACCACATTG
GGGTTGGAGAGCACCACGACGATCACCCGCACAGACCTCGTTGCTAGTGT
TGGCACCGAATCCACCGCCACCAGCTCCAGCTTCAGCAGCGGCAGTGGCG
GCGGCAGCAGCCCCAGCAGCATCAACATAAGTAACAGCAATTTCCTCCCT
CCCTCCGTCTTTCCGCAACTGCTGACGGGCTTGGCAGTCGTATGCCTGGC
CCTGTGTGCTTATGGACCTCATCCTCATCCTGCTCGCACCCCTTCCTCGC
CCACGACCTGCCCCTCCCCGTTCCCCTTCCCCCCCCTTTCTTCCACTTTC
ATACCCCCCTCCAGCAGCACCACTACCAGTGGCAGCAGCAGTAGTGGCAG
TAGCAGCAGCAGTAGCAAGAATCACGAAGCGTCCTCACCGAAGCCGAATG
ATCGTTTGTCTACCTCTACTACTCCTCTTCTTCTTCCTCCTTCTCCTCCT
CCTCCTCCTTCTCCTTCTTCCTCCTTCTGCCACCCCTCTACTTACCTCCG
CTCCTCTTTCTCTTCTTTTGCTTTCCCTTCTTCTCCCGATTCCTCCTCCT
CCCTCCCTATCCACACCCCCTTCCCCACCCGCAACTCGCTGCTGCTGCTG
CTCCTCCTCCTCCTCCTCCTCCTCTTCCCCCTCCGACACTGCTCCCTCTT
CGATCTCCTCGTCAGCAGGACGGAATTTCCTCTTCTACATTGCCCGAGGC
TAGAACACTCCCTGTCTGAGTACCTGACCTATGTCCTCTTTCCCTTCCTC
GATCCTTACGAGCTGTCAAAAGAGAAGGAGGAGGAGGAGAAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGGGATGGTGGGCGAGAAGG
AAGGCAAGGTGGAGGAAAAGGAGGTGTTGGGTGAGGAGGGGAAGGGTGCA
GTGAAGATTTTTCCTGACGGTCCTGCCTACATCAACAGAGGCAGTGGCAG
TAAAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAATTACAACAAGA
GTCCTTCCAGAGGAATAGCCTTCTCGTCCTGCTTCTCGTCCTCCTCGTCT
TCCTTCTCTTCCTCCCGCCATGCCTCTTTCCCTTCCTCTCCCTCCTTCTC
CTCCCTCCGCTCCCCCCCCTCTCCATTTTCCCTGACCACGGGGACACAAT
CCCTCCTTGAAGTCCATCGCCTCGCCTCCCCCCCTCCCTCTCTCCCTTCT
TTCCTTCCTCCCTTCCTTCCTTCCTCTCTCATCGGGGTGGGCACGATGAC
TACCCCCCCCCCGATGACGAAGGAAGGCGGAGTGCAGACCACAGGAGGGA
GAGAGGGTGAGGACGAGGAGGAGGGCTGGTCGATGAGGAAGAGGGAAGGG
GCAGAGATGGACTTGGAGGAGGAGGAGGGGGGCGGAGGGATGGAGGAAGG
GCAGAAGGAGGCGTTGGGAAAAGGCAGCATGATAATGAAGCGCCTGGAGG
GAGCGATGCGGTCGCTCCAGCACTTGGGATCCGAGAACGCCACATTCGCC
GCAGACAACAAGCGTTTGACTCGACATATGGAGCAGgcatgctttttcct
tctctccctccctccctccctcccttcctccctcccttcgtcccttcctt
ccacttctccctgccaacctgcctacactcttacctttttcctggccgtc
ttccctctcctcttctctccctcctcaccataccctttactccgaatggc
tcactccctccctccccccccccccctccctccctcccttccctagGTGG
AGACCGCCAACTTCCTCCTAACCGCTGAGAAGGAGCGGCTGCTCGATGAC
GCCCAGCAGCTGCACAAGGACCTCGCGCGACTGGAAGAGGAGAATGTCGC
CTTCTCGTTGCGTCTCAAGGAAGCGGAAGAGGAACAGGAGATTCTGAAGA
GAGAGATGCAGAAATCGGgtatatccctcccctccttccctcccttcctc
cccccgtgcctgtctccttcaattctaagttagccaaaatccatctttct
ccctccctccctccctcccttcctccctagACGACAAGGCCGAGGCCTAC
CATGGTGCGTTGATCAAAGAGCGGCAATGGCACAAGGCGACCCGGGAAAA
GCTCGGCGGTAAGATCGACGAGGTGAAGAAGGAGAGGGATGGAGCGCTTG
CGACTGTTGCTGCTACCATGCACGCGCATCGCTACACGCAGCAGCAGCTC
AGTCAGGCCATGGGAGGGCGGGAAGGAGGGCGGGAAGGAGGGCGGGAAGG
AGGGAGGGGAGGAGGAGAAAGACCCATTACCCCGGCCCCTCTTATGCCCT
TACCTCCTCCTCGGCATCACCACGGCGGATACCATCCTCCTGCTCCATTT
CAGCACCAGCATCGCCTTCCTCCCTTCTCTTCTTCTATCTCTCCCGCCCC
ATCTGTCGCCGCTCCTCGCTTTCCGACGCCCTCTCCGGTGCAGCAACCGC
AGTCGCAGCAGCAGCAGCACCCCCAAAAAAAACAACTCCAACAAGGACAA
GACCCACAACGACGTCAACAAGAAATGCAGCAGCACCACCACCAGCACCA
GCAGCAGCAGCAGCACCACCACCAGCAGCAGCAACACCAACACCAGCAAC
ATCAACACCAGCAACACCAGCAACACCATCACCAACAGCAGCAGCAATTG
CCGTCGCTACCATCGCTCCCTTCGGTACTGCCGCCACCTCCGGGTTTAGG
GATGGAGGGAGGGCGGGATGGAAGGAGAGGGGGGTGGGTGGTGGATAACG
CAGAGAAAGAGTGGAAGGACCAAGTAGCTGTCTTATTACGGTCCGTGGGT
GGGGAAAAGAGAGAAAAGGAGGGAGGGAAAGAGGGAGGGAATGGGAGAGA
GACGGGTATGCTTCATGGGATTTGGGGTGGGGGAGGGAGGGAGGGAGGAG
GGGAGGGAGGGATGGAGGGAGGTGTGGTCGGACCGTCAACTGTGTGGGGA
CCAGCGGGAGGCTCGACGTTTTTATAGATAAAAGGAGGTACACAGAGAGA
AGACGGGCAGGGAGACAGAGGAGATAATTTCGTTGGAAATAGAAACAAGG
ATAGGTGACATTGAAGGTGTAAGAAGGATACTGAGAAAGGGAAGAGAAGG
ATGAGATGAGAAGCGAAAGGGAAGATATATACGAAACGGAGCCTCCAGTG
CGGTAGATGAGGAGAAATAGGTAGAGCAAGAAGGATATAGAAGGAGGAGA
TTGATCATCTGTGTGATTGTATGCATGCGTCGGATGAAGTAGACTTCAAA
CTTAAGTGTAA
back to top

protein sequence of NO19G02380.1

>NO19G02380.1-protein ID=NO19G02380.1-protein|Name=NO19G02380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=935bp
MEVGNKSENTAGTVSPAAAAAENLFIHRAAVDGSGEKEGAAVAPTQTTTL
GLESTTTITRTDLVASVGTESTATSSSFSSGSGGGSSPSSINISNSNFLP
PSVFPQLLTGLAVVCLALCAYGPHPHPARTPSSPTTCPSPFPFPPLSSTF
IPPSSSTTTSGSSSSGSSSSSSKNHEASSPKPNDRLSTSTTPLLLPPSPP
PPPSPSSSFCHPSTYLRSSFSSFAFPSSPDSSSSLPIHTPFPTRNSLLLL
LLLLLLLLFPLRHCSLFDLLVSRTEFPLLHCPRLEHSLSEYLTYVLFPFL
DPYELSKEKEEEEKEEEEEEEEEEEEEGMVGEKEGKVEEKEVLGEEGKGA
VKIFPDGPAYINRGSGSKSSSSSSSSSSSNYNKSPSRGIAFSSCFSSSSS
SFSSSRHASFPSSPSFSSLRSPPSPFSLTTGTQSLLEVHRLASPPPSLPS
FLPPFLPSSLIGVGTMTTPPPMTKEGGVQTTGGREGEDEEEGWSMRKREG
AEMDLEEEEGGGGMEEGQKEALGKGSMIMKRLEGAMRSLQHLGSENATFA
ADNKRLTRHMEQVETANFLLTAEKERLLDDAQQLHKDLARLEEENVAFSL
RLKEAEEEQEILKREMQKSDDKAEAYHGALIKERQWHKATREKLGGKIDE
VKKERDGALATVAATMHAHRYTQQQLSQAMGGREGGREGGREGGRGGGER
PITPAPLMPLPPPRHHHGGYHPPAPFQHQHRLPPFSSSISPAPSVAAPRF
PTPSPVQQPQSQQQQHPQKKQLQQGQDPQRRQQEMQQHHHQHQQQQQHHH
QQQQHQHQQHQHQQHQQHHHQQQQQLPSLPSLPSVLPPPPGLGMEGGRDG
RRGGWVVDNAEKEWKDQVAVLLRSVGGEKREKEGGKEGGNGRETGMLHGI
WGGGGREGGGEGGMEGGVVGPSTVWGPAGGSTFL*
back to top
Synonyms
Publications