NO19G02370, NO19G02370 (gene) Nannochloropsis oceanica

Overview
NameNO19G02370
Unique NameNO19G02370
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3026
Alignment locationchr19:678112..681137 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:678112..681137 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO19G02370 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G02370.1NO19G02370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|162120gene_7637Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G02370.1NO19G02370.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G02370 ID=NO19G02370|Name=NO19G02370|organism=Nannochloropsis oceanica|type=gene|length=3026bp
ATGGAGAACAGCGGTACCATGACCAGTGGCGGCAGTGGCGGCTATGTCAA
GGTCAAAGGTAGACGGAAAAGCCGGGCTGCCGACGCCACATCCGCTGGCA
ACATCAAGGGGAAGACCGTCCCCCATCCCTCTCCCCCTGCTGCTGCGGCA
TCGACCCCGGGCAACGACGCCGCCCATTCCTCTACCCGACGTCCCATCAC
TTCCTCTACCAACGCCAGCAACACCAGCGGCAAAATCAAGGACGTCACTC
CTACCCTGTTCCCTGCGTCCAACCCTATCCGGACCTCCACCTTGCCCTCC
CTCCCGACTGTCCCCACGGCCTCCAGCTCCACCGCCCTACTCCCTTTCTC
TCAACCTCGAGTGACCAACCAAATAAGTTTTAATCGACGAGGGGTGCGAG
GAGGACAAGGTTCCAAGAGATCGAAGGGGCCAAGACGAGAGGGAGGAAGG
AAAGGAGGGGGGTATGGGCGTTGGAACGGGGAAGCTGCAGTACTACTACC
TGCCGTGTCTCTCCCTCTGTCTTCCTCGACCTTGGCGATGCTTCACGTTA
AGCCGGAGCAGAAGAAGAAGGAGAGCGGGGAAAACAAGATGGAGGGAAAA
ACGAAGAAGAAGGAGAAGAAGCTTGAGTATAAGCAAGAGAGGAAGGTGGG
AGAGCAGGGAGCTGCTGTTCCTGCTACTACTGCTGCTACAGAGCCGACGA
CGCCGGCGATAACAACAATCAACAACCGAGAAAGAAAGCGTCGACAAGAA
CAGCAGCGGTTGGAACGGCGTGAACAGCAGCAGCAGCAGCAGCAGCAGCA
GCAAAAGGAACGCCAGCTAGTAAAGCGCCAAGACAAAGCAGAGAAGAAAA
AATATAAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGAAGACTAT
AAAGCTGCCATTCCTCACATCTCCAGCAGCGACATGCACGCTTCGACCAC
CATGACCACCACTACCGCCAGCGGAAGCAGCAGCAGCAGCGAGGTCACTC
TTAATTCGTCTTCCCCTTGTTCCTCGTTATTCCTCCATTCCTCCTCCTCT
ACCGCACTGTTGACAAATATTCTCTTTCCACGTCCTCCTCTTAATCCTGC
AGCAGCACAGCAGCAGCAGCAGCAGGAGCAAGTCATTCCATTGCCGAAGA
GGGAGAAGAAGAAGAAGAAGAAGAAGAGCGACAAGAAAGAAGGAAATGAC
GTGACGGCCACCACGAATGAAGGCAGCAGCAGTGCGCTTTTGGAAAGCAT
CAGCAGCAATAGTAAAGAAAGCAGCAGCAGCAGCAGCAGCTCCATTCTTT
CCCCCCACCTCGACCTTGCTATCGCTCCCGGTAATTATAGTAGTAGCAGC
AGCAGCAGCAGCGGCAATAGCACCAGCAACCACACAGCCTGTCGCCTGTT
ACTCGCTGCCAATTTCGCCGACCTCGAGATCCTTCCTGTTGGGATGGGAG
GAAAGGCCGGCGGGGGGGAGGGAGGGCAGGGATTCCTTTCGAAGAAGCAA
CAGCAGCACCAGCGGCCGCAGCACCAGCAGCTACAACAGCAGCAACAGCA
GCAACATAATGGGGAGGCTCCTCGACCGCCGCCGCCATCGCCGCTGCCCT
TGTCAAGCCGTGGAGGAGGACGAGTGAGGGATGAGGGGAGAGGGGAGGAG
AAGGCAGGGGAGGAGGAGGAGGTGGAAAAGGAAGGGCATGGCGAGGACGA
TGGCCGTGGTGGAGGACGAGGGAGGGGGGGAGAGAGGGGGAAGGAGAAGG
AGGACGGCGATGGCGACGACGACGAGAGAGGCGAGATGCAAAGGAGTTTG
TCCTTGTCGTCCTTATTGGCCCAGgtgcgttgaaatcgatgtggggatca
ctgcatttctttcttcccctccccctctccctccctccttcgccttttgt
ctgatgcgacgtgctcatcagggtaaattcctcaatttctcttttctctc
ccttgattcctccgttccaccacgacagTTTGGGACCAGCGAGAAGAACT
ACCAAGATGAAGTCGGAGAAGGGGAGGAAGGCGGGATGGAGGGAGGAGAG
GCATTTGCCCAGCCTCCTCTTCCCCCTTTGGGTGCGCCTGGCAGCTTTCC
GTTTGAGATTAAGGAGGAAACGAGCGAGCGAGGGAGGGAGGAAGGGAAAG
GCCTCAGCACTGACTACACGCAACAGAGAGAAGTGGTGATGCCCAAGCAA
CAAGGAGTGGAACAACACCGGGAGTATACGCCAAAAGCCACATTTCCTCT
TCCCCTCCCTCCCTCTTTCCCCCCCCCCCCCCGGGACCTGGTCCAATTGT
CCCGGTCCACGACACCCGCTTCCTCCCTTCCCCCCTCGCCCCCAGCACTT
ATTTCGTCCCTTCTTACTTCGATCCCGTGGCCCGCCAGTGGTTTGGTTGT
TTTTACGGCCCTGAAGTCCCGATGGAGGGAGGAAGGGAGGGAACGAGGGG
GAAGCCGCAAAGAGGGCAATACACTGGCGTTGGGATGGAAGGAATGCAGC
AGCAGCAGCAGCAGCGGCAGCTGCCGCCGCCGTCGTTGCAGCAACCGTAC
TACAAACAGTATTCGCCGCCGCTGCCACACCACCACCAGCAGCAGCAGCA
GCAGCAAGCGATTGATATGTATGGCTATGGCAAGTACCCGATTCCTGTAT
ATCCTTCCCTCCCTCCTTCGAGCTTTCCTCGCCACTATACGTAGACGGAG
AAGCGAGGGAAAGGGAAGGGAGAAGGAAAGGATTAAGTGCACACATGAAC
GTTGGAAGGAGGTGGATATGGAGGGAGGAGTGGAAGGGAGGGAGGGAATG
GATGTCCGCGTGGGAAAATCGATATTTGACTGCGATCGATAGGAAGATAG
AGCGAGGGGGCCGGGAGAAATGTACTGTACATGGAGATATAACAAGAAAA
GTAAATAGAAGAAGGGGAGATAGCAAGGGATGAAAGGAGGAAGCAATGGA
GTCCATTTATTAGACGACAACCACCACCAAAACCGACAGGGGAGACCCCC
AAAGCAATCTTCAAAGCAGAAACGAC
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protein sequence of NO19G02370.1

>NO19G02370.1-protein ID=NO19G02370.1-protein|Name=NO19G02370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=896bp
MENSGTMTSGGSGGYVKVKGRRKSRAADATSAGNIKGKTVPHPSPPAAAA
STPGNDAAHSSTRRPITSSTNASNTSGKIKDVTPTLFPASNPIRTSTLPS
LPTVPTASSSTALLPFSQPRVTNQISFNRRGVRGGQGSKRSKGPRREGGR
KGGGYGRWNGEAAVLLPAVSLPLSSSTLAMLHVKPEQKKKESGENKMEGK
TKKKEKKLEYKQERKVGEQGAAVPATTAATEPTTPAITTINNRERKRRQE
QQRLERREQQQQQQQQQQKERQLVKRQDKAEKKKYKKQQQQQQQQQQEDY
KAAIPHISSSDMHASTTMTTTTASGSSSSSEVTLNSSSPCSSLFLHSSSS
TALLTNILFPRPPLNPAAAQQQQQQEQVIPLPKREKKKKKKKSDKKEGND
VTATTNEGSSSALLESISSNSKESSSSSSSSILSPHLDLAIAPGNYSSSS
SSSSGNSTSNHTACRLLLAANFADLEILPVGMGGKAGGGEGGQGFLSKKQ
QQHQRPQHQQLQQQQQQQHNGEAPRPPPPSPLPLSSRGGGRVRDEGRGEE
KAGEEEEVEKEGHGEDDGRGGGRGRGGERGKEKEDGDGDDDERGEMQRSL
SLSSLLAQFGTSEKNYQDEVGEGEEGGMEGGEAFAQPPLPPLGAPGSFPF
EIKEETSERGREEGKGLSTDYTQQREVVMPKQQGVEQHREYTPKATFPLP
LPPSFPPPPRDLVQLSRSTTPASSLPPSPPALISSLLTSIPWPASGLVVF
TALKSRWREEGRERGGSRKEGNTLALGWKECSSSSSSGSCRRRRCSNRTT
NSIRRRCHTTTSSSSSSKRLICMAMASTRFLYILPSLLRAFLATIRRRRS
EGKGREKERIKCTHERWKEVDMEGGVEGREGMDVRVGKSIFDCDR*
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Synonyms
Publications