NO19G02260, NO19G02260 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO19G02260
Unique Name	NO19G02260
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	4903
Alignment location	chr19:643158..648060 -

Link to JBrowse

Properties


Property Name	Value
Description	Rna binding motif protein 39b

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr19	genome	chr19:643158..648060 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0003723	RNA binding
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR029123	RBM39_linker
IPR000504	RRM_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0006397	mRNA processing

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Homology

[Close]

BLAST of NO19G02260 vs. NCBI_GenBank
Match: XP_008608392.1 (hypothetical protein SDRG_04495 [Saprolegnia diclina VS20] >EQC38065.1 hypothetical protein SDRG_04495 [Saprolegnia diclina VS20])

HSP 1 Score: 246.1 bits (627), Expect = 2.800e-61
Identity = 162/412 (39.32%), Postives = 223/412 (54.13%), Query Frame = 0

Query:  186 RDERSKEQRELDELTKDQRTIFVSQLTMKVDERVVKRFFENFGKVRSVVMLRDRASGKHKGFAYVEMADLEVIPNVLLMNDQQPDFQKFPIAVKASEAEKNYLAKQEAI----------AKG-----TVRPDGGRKRNVGQPNKVFLGNLHPNITEEDLLELLKPFGEVQALVLARNEEGVSKGFAFATFSEVEEAQTVMTQLGGVPLADRPIKVGPVNDRGVEAAAMGAT--------STPAT--------GNWKLDD---AGALPMNAASRADLMNKLGGGAGLSVPMPANPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTPSRALLLKNMFSPMEEKGDG---WELDIQEDVEDECSKYGKIRHSAVDTRSPAGHVYMLFKEGEEEGAHKSAQALNGRW 561
            R ER+K QREL ELT+D RTIFV QLT KV ER +++FF + GK+  V+++RD+ + K KGFAYVE ++LE IP VL MN Q P FQ FPI +KASEAEKN+ AK++A+          A G           G   ++   ++V+ GNLH NITEEDL  +   FG+V  +++ R++ G SKGF+F  FS  EEA   +T+  G+ LA   IKVGPV +     ++ G T        + P+          NWKL+D    G + +N+ SR+ LM KL GGAGL +P PA+                                      G  S   +++NMF   +EK  G   W  +IQ+DVEDECS+YGK+ HS V+     G VY+ F       + ++A  L+GRW
Sbjct:  114 RLERAK-QRELMELTRDHRTIFVGQLTQKVRERDLEKFFSSLGKLEHVLLIRDKFTNKSKGFAYVEFSNLEDIPKVLTMNGQVPSFQSFPIMIKASEAEKNFAAKKDAVFSSGPTTKASASGYSGGXXXXXXXGTGLSLAAASRVYCGNLHNNITEEDLKAVFSAFGDVVNVIINRDDMGRSKGFSFIQFSSPEEANLALTKANGLELAGNFIKVGPVKEGEGVGSSGGHTHSYQSHRDAPPSAFNNKNYGGSNWKLEDEEGTGGMALNSVSRSQLMAKLAGGAGL-MPPPAS------ASAMPSHQLPVAPSVVNAQNQRAAASAAADIEGIDSMCFVVRNMFELQKEKRAGNPDWHTEIQQDVEDECSRYGKVLHSYVEKAKEGGLVYICF--ATVSASREAAHCLHGRW 515

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BLAST of NO19G02260 vs. NCBI_GenBank
Match: XP_012208550.1 (hypothetical protein SPRG_13320 [Saprolegnia parasitica CBS 223.65] >KDO20738.1 hypothetical protein SPRG_13320 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 241.5 bits (615), Expect = 7.000e-60
Identity = 160/414 (38.65%), Postives = 218/414 (52.66%), Query Frame = 0

Query:  186 RDERSKEQRELDELTKDQRTIFVSQLTMKVDERVVKRFFENFGKVRSVVMLRDRASGKHKGFAYVEMADLEVIPNVLLMNDQQPDFQKFPIAVKASEAEKNYLAKQEAI----------AKG-----TVRPDGGRKRNVGQPNKVFLGNLHPNITEEDLLELLKPFGEVQALVLARNEEGVSKGFAFATFSEVEEAQTVMTQLGGVPLADRPIKVGPVND-RGV-----------------EAAAMGATSTPATGNWKLDD---AGALPMNAASRADLMNKLGGGAGLSVPMPANPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTPSRALLLKNMFSPMEEKGDG---WELDIQEDVEDECSKYGKIRHSAVDTRSPAGHVYMLFKEGEEEGAHKSAQALNGRW 561
            R ER+K QREL ELT+D RTIFV QLT KV ER +++FF + GK+  V+++RD+ + K KGFAYVE ++LE IP VL MN Q P FQ FPI +KASEAEKN+ AK++A+          A G           G   ++   ++V+ GNLH NITEEDL  +   FG+V  +++ R++ G SKGF+F  FS  EEA   +T+  G+ LA   IKVGPV +  GV                               NWKL+D    G + +N+ SR+ LM KL GGAGL +P PA+                                      G  S   +++NMF   +EK  G   W  +IQ+DVEDEC++YGK+ HS V+     G VY+ F       + ++A  L+GRW
Sbjct:  114 RLERAK-QRELMELTRDHRTIFVGQLTQKVRERDLEKFFSSLGKLEHVLLIRDKFTNKSKGFAYVEFSNLEDIPKVLTMNGQVPSFQSFPIMIKASEAEKNFAAKKDAVFSSGPTTKASASGYSGGXXXXXXXGTGLSLAAASRVYCGNLHNNITEEDLKAVFSAFGDVVNVIINRDDMGRSKGFSFIQFSSPEEANLALTKANGLELAGNFIKVGPVKEGEGVGXXXXXXXXXXXXXXXXXXXXXXNNKNYGGNNWKLEDEEGTGGMALNSVSRSQLMAKLAGGAGL-MPPPAS------ASAMPSYQLPVAPSVVNAQNQRAAASAAADIEGVDSMCFVVRNMFELQKEKRSGNPEWHTEIQQDVEDECARYGKVLHSYVEKTKEGGLVYICF--ATVSASREAAHCLHGRW 517

[Close]

BLAST of NO19G02260 vs. NCBI_GenBank
Match: OQR83934.1 (hypothetical protein ACHHYP_14107 [Achlya hypogyna])

HSP 1 Score: 240.7 bits (613), Expect = 1.200e-59
Identity = 158/411 (38.44%), Postives = 216/411 (52.55%), Query Frame = 0

Query:  186 RDERSKEQRELDELTKDQRTIFVSQLTMKVDERVVKRFFENFGKVRSVVMLRDRASGKHKGFAYVEMADLEVIPNVLLMNDQQPDFQKFPIAVKASEAEKNYLAKQEAIAKG-----------------TVRPDGGRKRNVGQPNKVFLGNLHPNITEEDLLELLKPFGEVQALVLARNEEGVSKGFAFATFSEVEEAQTVMTQLGGVPLADRPIKVGPVND-RGVEAAA---MGATSTPAT---------GNWKLDD---AGALPMNAASRADLMNKLGGGAGLSVPMPANPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTPSRALLLKNMFSPMEEKGDG---WELDIQEDVEDECSKYGKIRHSAVDTRSPAGHVYMLFKEGEEEGAHKSAQALNGRW 561
            R ER+K QREL ELT+D RTIFV QLT KV E+ +++FF + GK+  V+++RD+ + K KGFAYVE ++LE IP VL MN Q P FQ FPI +KASEAEKN+ AK++A+                                   ++V+ GNLH NITEEDL  +   FG+V  +++ R++ G SKGF F  FS  EEA   M +  G+ LA   IKVGPV +  GV + +    G    P +         GNWKL+D    G + +N+ SR+ LM KL GG GL  P PA+                                      G  S   +++NMF   +EK  G   W ++IQ+DVEDEC++YGK+ HS V+     G VY+ F       + ++A  L+GRW
Sbjct:  113 RIERAK-QRELMELTRDHRTIFVGQLTQKVREKDLEKFFGSLGKLEHVLLIRDKFTNKSKGFAYVEFSNLEDIPKVLTMNGQVPSFQSFPIMIKASEAEKNFAAKKDAVFSSGPTTKASXXXXXXXXXXXXXXXXXXXXXXXXXSRVYCGNLHNNITEEDLKAVFSAFGDVVNVIINRDDMGRSKGFGFIQFSSPEEANLAMNKGNGLELAGNFIKVGPVKEGEGVSSGSSSYYGHRDAPPSSFNNKSYGGGNWKLEDEEGTGGIALNSISRSQLMAKLAGGTGLMAP-PAS-------TMPTPHQLPVAPSVVNAQNQRAAASAAADIEGIDSMCFVVRNMFDLQKEKRSGNADWHIEIQQDVEDECARYGKVLHSYVEKTKEGGLVYICF--ASLSASREAAHCLHGRW 512

[Close]

BLAST of NO19G02260 vs. NCBI_GenBank
Match: OQR90951.1 (hypothetical protein THRCLA_09140 [Thraustotheca clavata])

HSP 1 Score: 239.6 bits (610), Expect = 2.700e-59
Identity = 159/415 (38.31%), Postives = 218/415 (52.53%), Query Frame = 0

Query:  186 RDERSKEQRELDELTKDQRTIFVSQLTMKVDERVVKRFFENFGKVRSVVMLRDRASGKHKGFAYVEMADLEVIPNVLLMNDQQPDFQKFPIAVKASEAEKNYLAKQEAIAKG--TVRPDGG-----------------RKRNVGQPNKVFLGNLHPNITEEDLLELLKPFGEVQALVLARNEEGVSKGFAFATFSEVEEAQTVMTQLGGVPLADRPIKVGPVND-RGVEAAAMG-------ATSTPAT-------GNWKLDD---AGALPMNAASRADLMNKLGGGAGLSVPMPANPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTPSRALLLKNMFSPMEEKGDG---WELDIQEDVEDECSKYGKIRHSAVDTRSPAGHVYMLFKEGEEEGAHKSAQALNGRW 561
            R ER+K QREL ELT+D RTIFV QLT KV ER +++FF + GK+  V+++RD+ + K KGFAYVE ++LE IP VL MN Q P FQ FPI +KASEAEKN+ AK++A+     T +                         +   ++V+ GNLH NITEEDL  +   FG+V  +++ R++ G SKGF F  F+  EEA   + +  G+ LA   IKVGPV +  GV  ++           S P++       GNWKL+D    G L +N+ SR  LM KL GG GL  P PA+                                      G  S   +++NMF   +EK  G   W  +IQ+DVEDECS+YGK+ H+ V+     G VY+ F       + ++A  L+GRW
Sbjct:  116 RVERAK-QRELMELTRDHRTIFVGQLTQKVRERELEKFFGSLGKLEHVLLIRDKFTNKSKGFAYVEFSNLEDIPKVLTMNGQVPSFQSFPIMIKASEAEKNFAAKKDAVFSSGPTTKASASGYSXXXXXXXXXXXXXXXXXXLAAASRVYCGNLHSNITEEDLKAVFSAFGDVVNVIINRDDMGRSKGFGFVQFASPEEANLALNKANGLELAGNFIKVGPVKEGEGVSGSSYHQYQGSGYRDSGPSSFNNKSYGGNWKLEDEEGTGGLTLNSISRTQLMAKLAGGTGLMQP-PAS-------VQPSVHQLPVAPSVVNAQNQRAAASAAADIEGRDSMCFVVRNMFDLQKEKRSGNPDWHTEIQQDVEDECSRYGKVLHTHVEKTKEGGLVYVCF--ANLSASREAAHCLHGRW 519

[Close]

BLAST of NO19G02260 vs. NCBI_GenBank
Match: ETI44918.1 (hypothetical protein F443_10365 [Phytophthora parasitica P1569])

HSP 1 Score: 238.0 bits (606), Expect = 7.700e-59
Identity = 155/391 (39.64%), Postives = 222/391 (56.78%), Query Frame = 0

Query:  196 LDELTKDQRTIFVSQLTMKVDERVVKRFFENFGKVRSVVMLRDRASGKHKGFAYVEMADLEVIPNVLLMNDQQPDFQKFPIAVKASEAEKNYLAKQEAIAKGTVRPDGGRKRNVG------------------QPNKVFLGNLHPNITEEDLLELLKPFGEVQALVLARNEEGVSKGFAFATFSEVEEAQTVMTQLGGVPLADRPIKVGPVNDRGV--EAAAMGATSTPATGNWKLDD--AGALPMNAASRADLMNKLGGGAGLSVPM-PANPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTPSRALLLKNMFSPMEEKGDG---WELDIQEDVEDECSKYGKIRHSAVDTRSPAGHVYMLFKEGEEEGAHKSAQALNGRW 561
            L ELT+D RT+FV QLT KV E+ ++RF    GKV +V+++RD+ + + KGFAYVE+++LE +P VLL+N Q PDFQ FPI +KASEAEKN+ AK++++   TV   G      G                    ++++ GNLH NITE+DL  + + FGEV ++ + R+E G SKGF+F  FS  +EA   +++  G+ LA   +++GPVN+  V   A      ++   G WKL+D     L MNA SR+ LM KL   AG  V + P+                 XXXXXXXXX             G+ S   ++KNMF   +E+  G   W ++IQ+DVE+EC +YG + H+ V+     G VY+LF  G  E A  +A+ L+GRW
Sbjct:  139 LMELTRDHRTVFVGQLTQKVREKDLERFLNKTGKVENVLLIRDKFTNRSKGFAYVELSNLEDVPKVLLLNGQVPDFQVFPIMIKASEAEKNFAAKKDSVMNATVASSGSLTDASGAGLAGAIAGGGMSASALSAASRIYCGNLHTNITEDDLRIVFQSFGEVLSVTINRDEMGRSKGFSFIQFSSPQEANFALSKGNGLELAGNYLRLGPVNENAVSNRAGTASMDNSATGGRWKLEDEEGAGLSMNAQSRSALMAKL---AGNDVNLFPSMSGAGGYAASTTAYTNSXXXXXXXXXEQATALMSSTEIEGSESFCFVVKNMFDVYQEQKSGNPEWAVEIQQDVEEECGQYGSVLHTYVEKEKQGGLVYVLF--GTVEAAVAAAKMLHGRW 524

[Close]

BLAST of NO19G02260 vs. NCBI_GenBank
Match: ETI44919.1 (hypothetical protein, variant 1 [Phytophthora parasitica P1569] >ETI44920.1 hypothetical protein, variant 2 [Phytophthora parasitica P1569])

HSP 1 Score: 238.0 bits (606), Expect = 7.700e-59
Identity = 155/391 (39.64%), Postives = 222/391 (56.78%), Query Frame = 0

Query:  196 LDELTKDQRTIFVSQLTMKVDERVVKRFFENFGKVRSVVMLRDRASGKHKGFAYVEMADLEVIPNVLLMNDQQPDFQKFPIAVKASEAEKNYLAKQEAIAKGTVRPDGGRKRNVG------------------QPNKVFLGNLHPNITEEDLLELLKPFGEVQALVLARNEEGVSKGFAFATFSEVEEAQTVMTQLGGVPLADRPIKVGPVNDRGV--EAAAMGATSTPATGNWKLDD--AGALPMNAASRADLMNKLGGGAGLSVPM-PANPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTPSRALLLKNMFSPMEEKGDG---WELDIQEDVEDECSKYGKIRHSAVDTRSPAGHVYMLFKEGEEEGAHKSAQALNGRW 561
            L ELT+D RT+FV QLT KV E+ ++RF    GKV +V+++RD+ + + KGFAYVE+++LE +P VLL+N Q PDFQ FPI +KASEAEKN+ AK++++   TV   G      G                    ++++ GNLH NITE+DL  + + FGEV ++ + R+E G SKGF+F  FS  +EA   +++  G+ LA   +++GPVN+  V   A      ++   G WKL+D     L MNA SR+ LM KL   AG  V + P+                 XXXXXXXXX             G+ S   ++KNMF   +E+  G   W ++IQ+DVE+EC +YG + H+ V+     G VY+LF  G  E A  +A+ L+GRW
Sbjct:  139 LMELTRDHRTVFVGQLTQKVREKDLERFLNKTGKVENVLLIRDKFTNRSKGFAYVELSNLEDVPKVLLLNGQVPDFQVFPIMIKASEAEKNFAAKKDSVMNATVASSGSLTDASGAGLAGAIAGGGMSASALSAASRIYCGNLHTNITEDDLRIVFQSFGEVLSVTINRDEMGRSKGFSFIQFSSPQEANFALSKGNGLELAGNYLRLGPVNENAVSNRAGTASMDNSATGGRWKLEDEEGAGLSMNAQSRSALMAKL---AGNDVNLFPSMSGAGGYAASTTAYTNSXXXXXXXXXEQATALMSSTEIEGSESFCFVVKNMFDVYQEQKSGNPEWAVEIQQDVEEECGQYGSVLHTYVEKEKQGGLVYVLF--GTVEAAVAAAKMLHGRW 524

[Close]

BLAST of NO19G02260 vs. NCBI_GenBank
Match: ETK84920.1 (hypothetical protein L915_10141 [Phytophthora parasitica] >ETL38337.1 hypothetical protein L916_10048 [Phytophthora parasitica] >ETM44765.1 hypothetical protein L914_10011 [Phytophthora parasitica] >ETO73562.1 hypothetical protein F444_10477 [Phytophthora parasitica P1976] >ETP14745.1 hypothetical protein F441_10317 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 238.0 bits (606), Expect = 7.700e-59
Identity = 155/391 (39.64%), Postives = 222/391 (56.78%), Query Frame = 0

Query:  196 LDELTKDQRTIFVSQLTMKVDERVVKRFFENFGKVRSVVMLRDRASGKHKGFAYVEMADLEVIPNVLLMNDQQPDFQKFPIAVKASEAEKNYLAKQEAIAKGTVRPDGGRKRNVG------------------QPNKVFLGNLHPNITEEDLLELLKPFGEVQALVLARNEEGVSKGFAFATFSEVEEAQTVMTQLGGVPLADRPIKVGPVNDRGV--EAAAMGATSTPATGNWKLDD--AGALPMNAASRADLMNKLGGGAGLSVPM-PANPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTPSRALLLKNMFSPMEEKGDG---WELDIQEDVEDECSKYGKIRHSAVDTRSPAGHVYMLFKEGEEEGAHKSAQALNGRW 561
            L ELT+D RT+FV QLT KV E+ ++RF    GKV +V+++RD+ + + KGFAYVE+++LE +P VLL+N Q PDFQ FPI +KASEAEKN+ AK++++   TV   G      G                    ++++ GNLH NITE+DL  + + FGEV ++ + R+E G SKGF+F  FS  +EA   +++  G+ LA   +++GPVN+  V   A      ++   G WKL+D     L MNA SR+ LM KL   AG  V + P+                 XXXXXXXXX             G+ S   ++KNMF   +E+  G   W ++IQ+DVE+EC +YG + H+ V+     G VY+LF  G  E A  +A+ L+GRW
Sbjct:  139 LMELTRDHRTVFVGQLTQKVREKDLERFLNKTGKVENVLLIRDKFTNRSKGFAYVELSNLEDVPKVLLLNGQVPDFQVFPIMIKASEAEKNFAAKKDSVMNATVASSGSLTDASGAGLAGAIAGGGMSASALSAASRIYCGNLHTNITEDDLRIVFQSFGEVLSVTINRDEMGRSKGFSFIQFSSPQEANFALSKGNGLELAGNYLRLGPVNENAVSNRAGTASMDNSATGGRWKLEDEEGAGLSMNAQSRSALMAKL---AGNDVNLFPSMSGAGGYAASTTAYTNSXXXXXXXXXEQATALMSSTEIEGSESFCFVVKNMFDVYQEQKSGNPEWAVEIQQDVEEECGQYGSVLHTYVEKEKQGGLVYVLF--GTVEAAVAAAKKLHGRW 524

[Close]

BLAST of NO19G02260 vs. NCBI_GenBank
Match: ETK84921.1 (hypothetical protein, variant 1 [Phytophthora parasitica] >ETK84922.1 hypothetical protein, variant 2 [Phytophthora parasitica] >ETL38338.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETL38339.1 hypothetical protein, variant 2 [Phytophthora parasitica] >ETM44766.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETM44767.1 hypothetical protein, variant 2 [Phytophthora parasitica] >ETO73563.1 hypothetical protein, variant 1 [Phytophthora parasitica P1976] >ETO73564.1 hypothetical protein, variant 2 [Phytophthora parasitica P1976] >ETP14746.1 hypothetical protein, variant 1 [Phytophthora parasitica CJ01A1] >ETP14747.1 hypothetical protein, variant 2 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 238.0 bits (606), Expect = 7.700e-59
Identity = 155/391 (39.64%), Postives = 222/391 (56.78%), Query Frame = 0

Query:  196 LDELTKDQRTIFVSQLTMKVDERVVKRFFENFGKVRSVVMLRDRASGKHKGFAYVEMADLEVIPNVLLMNDQQPDFQKFPIAVKASEAEKNYLAKQEAIAKGTVRPDGGRKRNVG------------------QPNKVFLGNLHPNITEEDLLELLKPFGEVQALVLARNEEGVSKGFAFATFSEVEEAQTVMTQLGGVPLADRPIKVGPVNDRGV--EAAAMGATSTPATGNWKLDD--AGALPMNAASRADLMNKLGGGAGLSVPM-PANPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTPSRALLLKNMFSPMEEKGDG---WELDIQEDVEDECSKYGKIRHSAVDTRSPAGHVYMLFKEGEEEGAHKSAQALNGRW 561
            L ELT+D RT+FV QLT KV E+ ++RF    GKV +V+++RD+ + + KGFAYVE+++LE +P VLL+N Q PDFQ FPI +KASEAEKN+ AK++++   TV   G      G                    ++++ GNLH NITE+DL  + + FGEV ++ + R+E G SKGF+F  FS  +EA   +++  G+ LA   +++GPVN+  V   A      ++   G WKL+D     L MNA SR+ LM KL   AG  V + P+                 XXXXXXXXX             G+ S   ++KNMF   +E+  G   W ++IQ+DVE+EC +YG + H+ V+     G VY+LF  G  E A  +A+ L+GRW
Sbjct:  139 LMELTRDHRTVFVGQLTQKVREKDLERFLNKTGKVENVLLIRDKFTNRSKGFAYVELSNLEDVPKVLLLNGQVPDFQVFPIMIKASEAEKNFAAKKDSVMNATVASSGSLTDASGAGLAGAIAGGGMSASALSAASRIYCGNLHTNITEDDLRIVFQSFGEVLSVTINRDEMGRSKGFSFIQFSSPQEANFALSKGNGLELAGNYLRLGPVNENAVSNRAGTASMDNSATGGRWKLEDEEGAGLSMNAQSRSALMAKL---AGNDVNLFPSMSGAGGYAASTTAYTNSXXXXXXXXXEQATALMSSTEIEGSESFCFVVKNMFDVYQEQKSGNPEWAVEIQQDVEEECGQYGSVLHTYVEKEKQGGLVYVLF--GTVEAAVAAAKKLHGRW 524

[Close]

BLAST of NO19G02260 vs. NCBI_GenBank
Match: ETL91468.1 (hypothetical protein L917_09977 [Phytophthora parasitica])

HSP 1 Score: 238.0 bits (606), Expect = 7.700e-59
Identity = 146/391 (37.34%), Postives = 213/391 (54.48%), Query Frame = 0

Query:  196 LDELTKDQRTIFVSQLTMKVDERVVKRFFENFGKVRSVVMLRDRASGKHKGFAYVEMADLEVIPNVLLMNDQQPDFQKFPIAVKASEAEKNYLAKQEAIAKGTVRPDGGRKRNVG------------------QPNKVFLGNLHPNITEEDLLELLKPFGEVQALVLARNEEGVSKGFAFATFSEVEEAQTVMTQLGGVPLADRPIKVGPVNDRGV--EAAAMGATSTPATGNWKLDD--AGALPMNAASRADLMNKLGGGAGLSVPM-PANPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTPSRALLLKNMFSPMEEKGDG---WELDIQEDVEDECSKYGKIRHSAVDTRSPAGHVYMLFKEGEEEGAHKSAQALNGRW 561
            L ELT+D RT+FV QLT KV E+ ++RF    GKV +V+++RD+ + + KGFAYVE+++LE +P VLL+N Q PDFQ FPI +KASEAEKN+ AK++++   TV   G      G                    ++++ GNLH NITE+DL  + + FGEV ++ + R+E G SKGF+F  FS  +EA   +++  G+ LA   +++GPVN+  V   A      ++   G WKL+D     L MNA SR+ LM KL   AG  V + P+                                       G+ S   ++KNMF   +E+  G   W ++IQ+DVE+EC +YG + H+ V+     G VY+LF  G  E A  +A+ L+GRW
Sbjct:  139 LMELTRDHRTVFVGQLTQKVREKDLERFLNKTGKVENVLLIRDKFTNRSKGFAYVELSNLEDVPKVLLLNGQVPDFQVFPIMIKASEAEKNFAAKKDSVMNATVASSGSLTDASGAGLAGAIAGGGMSASALSAASRIYCGNLHTNITEDDLRIVFQSFGEVLSVTINRDEMGRSKGFSFIQFSSPQEANFALSKGNGLELAGNYLRLGPVNENAVSNRAGTASMDNSATGGRWKLEDEEGAGLSMNAQSRSALMAKL---AGNDVNLFPSMSGAGGYAAPTTAYTNSTAATAAQRAEQATALMSSTEIEGSESFCFVVKNMFDVYQEQKSGNPEWAVEIQQDVEEECGQYGSVLHTYVEKEKQGGLVYVLF--GTVEAAVAAAKKLHGRW 524

[Close]

BLAST of NO19G02260 vs. NCBI_GenBank
Match: ETL91469.1 (hypothetical protein, variant 1 [Phytophthora parasitica] >ETL91470.1 hypothetical protein, variant 2 [Phytophthora parasitica])

HSP 1 Score: 238.0 bits (606), Expect = 7.700e-59
Identity = 146/391 (37.34%), Postives = 213/391 (54.48%), Query Frame = 0

Query:  196 LDELTKDQRTIFVSQLTMKVDERVVKRFFENFGKVRSVVMLRDRASGKHKGFAYVEMADLEVIPNVLLMNDQQPDFQKFPIAVKASEAEKNYLAKQEAIAKGTVRPDGGRKRNVG------------------QPNKVFLGNLHPNITEEDLLELLKPFGEVQALVLARNEEGVSKGFAFATFSEVEEAQTVMTQLGGVPLADRPIKVGPVNDRGV--EAAAMGATSTPATGNWKLDD--AGALPMNAASRADLMNKLGGGAGLSVPM-PANPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTPSRALLLKNMFSPMEEKGDG---WELDIQEDVEDECSKYGKIRHSAVDTRSPAGHVYMLFKEGEEEGAHKSAQALNGRW 561
            L ELT+D RT+FV QLT KV E+ ++RF    GKV +V+++RD+ + + KGFAYVE+++LE +P VLL+N Q PDFQ FPI +KASEAEKN+ AK++++   TV   G      G                    ++++ GNLH NITE+DL  + + FGEV ++ + R+E G SKGF+F  FS  +EA   +++  G+ LA   +++GPVN+  V   A      ++   G WKL+D     L MNA SR+ LM KL   AG  V + P+                                       G+ S   ++KNMF   +E+  G   W ++IQ+DVE+EC +YG + H+ V+     G VY+LF  G  E A  +A+ L+GRW
Sbjct:  139 LMELTRDHRTVFVGQLTQKVREKDLERFLNKTGKVENVLLIRDKFTNRSKGFAYVELSNLEDVPKVLLLNGQVPDFQVFPIMIKASEAEKNFAAKKDSVMNATVASSGSLTDASGAGLAGAIAGGGMSASALSAASRIYCGNLHTNITEDDLRIVFQSFGEVLSVTINRDEMGRSKGFSFIQFSSPQEANFALSKGNGLELAGNYLRLGPVNENAVSNRAGTASMDNSATGGRWKLEDEEGAGLSMNAQSRSALMAKL---AGNDVNLFPSMSGAGGYAAPTTAYTNSTAATAAQRAEQATALMSSTEIEGSESFCFVVKNMFDVYQEQKSGNPEWAVEIQQDVEEECGQYGSVLHTYVEKEKQGGLVYVLF--GTVEAAVAAAKKLHGRW 524

The following BLAST results are available for this feature:

BLAST of NO19G02260 vs. NCBI_GenBank

BLAST of NO19G02260 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
XP_008608392.1	2.800e-61	39.32	hypothetical protein SDRG_04495 [Saprolegnia dicli...	[more]
XP_012208550.1	7.000e-60	38.65	hypothetical protein SPRG_13320 [Saprolegnia paras...	[more]
OQR83934.1	1.200e-59	38.44	hypothetical protein ACHHYP_14107 [Achlya hypogyna...	[more]
OQR90951.1	2.700e-59	38.31	hypothetical protein THRCLA_09140 [Thraustotheca c...	[more]
ETI44918.1	7.700e-59	39.64	hypothetical protein F443_10365 [Phytophthora para...	[more]
ETI44919.1	7.700e-59	39.64	hypothetical protein, variant 1 [Phytophthora para...	[more]
ETK84920.1	7.700e-59	39.64	hypothetical protein L915_10141 [Phytophthora para...	[more]
ETK84921.1	7.700e-59	39.64	hypothetical protein, variant 1 [Phytophthora para...	[more]
ETL91468.1	7.700e-59	37.34	hypothetical protein L917_09977 [Phytophthora para...	[more]
ETL91469.1	7.700e-59	37.34	hypothetical protein, variant 1 [Phytophthora para...	[more]

Pages

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL012	nonsL012	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR034	ncniR034	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR039	ngnoR039	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO19G02260.1	NO19G02260.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|599402	gene_7625	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO19G02260.1	NO19G02260.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO19G02260 ID=NO19G02260|Name=NO19G02260|organism=Nannochloropsis oceanica|type=gene|length=4903bp
ATGGCGGACACGGGCGACATTGAGGCCTACTTGGAGCAGCAGGTGGAGCA
GCAGgtgcgtttgttgacatggaaggaaggggtgtaagggggaatggtaa
tgatgacgaaaaacgacatggaaagagggaaaaaagttgacgtgggttcc
tgagaattgcatgcagctgatgtgaccaaacctttcccttgtcaaatgtg
ccaccgctgcttctctcctgccgcaatcgaacttgcgaggtgaccctcgt
tcctccccccctttacccttacccctcccctctccgatccaccactcccc
tactagGCTGCCGCGGCCGCTGCGGCGCTTGCTCCCTCCTCCTCCACCTC
CGGACTGAAGGATGACGAGGACCAAGACGATCGCAGCCGCTCGCGCCGTG
GGGGAGGTGGGGATCGGGAGGGAAGAAGCCGACGTTCCAGgtgagtgaag
gatgagggaaaggacagcgcgtttgtttcctgtggtcaggtgaattgtag
agacaagatgagagtggaatagaggaagggatatgaagggttcagtggtt
gcgctgacacccacccactcccacatcccctctttcttaggcgaggggag
gttagtccgtccgtctaaaaagggagggaggggaaggaggaagaagtggt
ggagggcatgggcctgtgcgtgtttgtatttgcatgtgtgtctctctgta
ccccaatcacaggcagctgctttcctcccctcctcccctctccctcgtcc
tcctttcctttcttctcgatgaaaccaggacgtaaaaacccgacaagaat
ccagacaaaggcaatgtgcttgccttccctccctcccttcctcactcacc
cctccctcccgtacgtgtcataattatacgcactctgccctcttcctcct
tcccttcctccgccttctcttcctcccccgcaccctgcggatgcctccac
ttgtctagtaatacacataccacaggcagtcaaagagccgggagtccctc
cctccctccctcccttgaaatgacaggccggcgcctactgccggggggaa
agactggtcttcatttcctctgttaaatcactcccttttctccccctccc
tccctccttccttccctccctccctccctccttccatcccacagGAGTCC
GCGCGAGTCCTCCCGTCGAGGTGGAGGAGGAAGACAGGAGGAAGGAACGG
AGGAAGGGAGGGAGGGACGCTACAACAGGGTGAGGGACCGGGACGAAGAT
CGTCGTCACAGGCGCAGCCGTCGGTCTCGGTCTCGGTCTCGGTCTCGGTC
GCGTAGCCGTGgtaagtgaagaagggagggagggagggagggagggaggg
aggggagggaaaagatgcccattggacaaactgtcaatggttgttcttac
cttcgatccaagcagtcaccccctttctccctccctccctccctccgtag
ATCGAAGCCACCGTCGTACCGACAGCGGCCGCAGCAGCAGCAGGCGTCGC
CGCAGCCCGTCCTCCCGCTCTCGCTCCCGCTCCCCTTCCTCCTCCCGCAC
CTCCCGCCCTCGGGGCCGGGGTCGCGCTGTCCCTTCCGCCCGCGGCGACG
ACGGGCCCGACCGACGAGCCCAGCACCTCCCCAGCCACAAGGAAGACTAC
CGGGACGAGCGGAGTAAGGAACAGCGAGAGCTGGACGAGTTGACCAAAGA
CCAGCGCACCATCTTCGTGTCGCAGCTGACCATGAAAGTGGACGAGAGAG
TCGTCAAGCGCTTCTTCGAGAATTTCGGGAAGGTCCGGAGCGTGGTTATG
CTCCGCGACAGGGCCTCGGGGAAGCATAAAGgtaggcatgctggtgggct
agccctccctccctccctctttttcaatcctttcacttctgtcatcgtcc
cccctccccctccttctttccctcccgtcgtggatctccccccccatccc
cccctcccacgcttaggcgtcgccttcgttgagatgacagaccctcttcc
ccctcctctcctctctccctccccctccttcctcccctccccccatcccc
acccaccccctcagGTTTCGCCTACGTGGAGATGGCGGACCTGGAGGTCA
TTCCCAACGTCCTCCTCATGAACGATCAACAGCCGGACTTTCAAAAATTT
CCTATCGCCGTCAAGGCTTCCGAGgtacgccctccctccctccctccctc
cctcctcctcctccctccctccctccttcttccacccctctccaaatctc
tctttctccccttccttcccgtcctctctcgcccctcgtgctctggagcc
cgtcgagccagtccgaatcataccctccctccctccctccctccctccct
ccctccctcagGCGGAGAAGAACTACCTGGCCAAACAAGAGGCCATCGCT
AAGGGCACCGTGCGACCCGACGGGGGCCGAAAGCGCAATGTTGGACAGCC
AAATAAGgtgcgtagccctccctccctcccttcctccctccctccttccc
tctgttcccctcctccctccctccttctccatcagtttatctttatggcc
gctctcggtttcaacagagggatggagggaagggaggaggaagggaacca
ttttttccctccttcctgctctccctccttccccccctctcctctcctct
cctctctctctctcacggtcatttgttggtgtttctcgacaagtacctcc
catcccatcacatgagcgctttggatggagcagcctaagcgcattcgaga
gcatcaagcaagcctttgcttgtccgccctccttgacgaggagtgagaga
atgaaacctttgactctccctccctccttccctccctccctcactccctc
cctccctccctccttccctccgttccctcccttagGTCTTCCTGGGCAAT
CTCCACCCCAACATCACCGAGGAGGACTTGCTGGAGCTCTTGAAACCCTT
CGGAGAGGTGCAGGCCCTGGTTTTGGCGCGAAACGAGGAGGGTGTAAGCA
AAGGTTTTGCTTTCGCCACCTTCAGCGAGgtggggagggagggagggagg
gagggagggagggagggagggagggaagagaaggggttgtgtggtgaaag
gccgaatgagtgaccaccagccaattacagtgtaattgcttctgaaatga
gatgataatcttcccgtctctcgtcaaaaaattaccgtgaaattgattct
tatttgagatgctgattaccttcctcgtctctggtttctcacaacagGTG
GAGGAGGCGCAGACCGTCATGACACAGCTAGgtgaggaaggagcgaggga
aggaggaaaggaaggaagaaaggaaggagggaggaggaaaggagggaagg
tcttttttctaccgttttaaaaatcttctcttcttcctcccctttacttc
ctttttcctcccctcccctaaatattgccggaaagaaaataactcgcacc
ctccctccctccctccctccctcccttagGCGGCGTGCCGCTGGCCGACC
GGCCCATCAAGGTGGGTCCTGTCAACGACCGCGGCGTCGAGGCCGCCGCC
ATGGGGGCGACGAGgtaggagggagggaggaagggaagggacgatgaaaa
gtattttgtggggtgggcactaagggagtggggacaggtggaattgggac
aacgtaaaatgctttcattcccattaaaatgctaccatcctggcacctcg
ccttccttccctccctccctccctccctccctcagCACCCCCGCCACGGG
TAATTGGAAGCTAGACGATGCCGGAGCCTTACCGATGAACGCCGCCTCTC
GCGCGGACCTCATGAACAAGCTGGGGGGGGGGGCAGGGTTGTCGGTTCCC
ATGCCGgtaaagagggaggaagggaaggagggagcgagggagggaggtgt
gtgccgcttatgcgtgaatgttgttccccagaggagaaaagctcgtgaac
aagctcaaaggaggaacagagcgtcggtcggaccctccgtccctccgtcc
gtccctccctccctccctccatgaccccatccctccctctctctctctcc
ttccctcattctcgtctcctcacctcattctaccctccctccctccctcc
ttccctccctccctccctacctctcccaagGCCAACCCTGCCGCTGCCGC
TGCTCTCCAACTCCAGCAACAGCAGCAGCTGCAGCAGATGCTTCTCCTTC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGGCCCCCCTCCTATATTA
GGAACCCCATCCCGGGCGCTACTGCTTAAAAACATGTTCAGCCCGATGGA
GGAGAAAGGGGATGGGTGGGAGCTGGACATCCAGGAAGgtacgccctccc
tccttccctctctatctcccatcctttctctctcccgtgtgattttgttc
ggttgtcttttatgcccaccctcttctcttacttcctcccttccctcccc
tcctcccttctctccttcctgcctcccttctagACGTGGAAGACGAGTGT
AGCAAGTACGGCAAGATCCGTCACTCGGCCGTGGATACCCGAAGTCCGGC
CGGCCACGTGTACATGCTCTTCAAGGAAGGGGAGGAGGAGGGGGCGCACA
AGTCGGCTCAAGCCTTGAATGGACGTTGgttcgcagggaggatgattgtg
gtggagtttatttctgtggagagctatatgcagaggtaccccaagGCCGA
GGCGGAGGCGGAGGCAGAGGAGTAGGAGTAGGGAGGGTGAGAGGGAGTGC
GAGGCGGGAATGAGGGTGGAAGACGAGGATAGAGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGATGTCTATGATGGTTTTGGTGATTGCCCTCCACCTCACC
TAG

protein sequence of NO19G02260.1

>NO19G02260.1-protein ID=NO19G02260.1-protein|Name=NO19G02260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=629bp
MADTGDIEAYLEQQVEQQAAAAAAALAPSSSTSGLKDDEDQDDRSRSRRG
GGGDREGRSRRSRSPRESSRRGGGGRQEEGTEEGREGRYNRVRDRDEDRR
HRRSRRSRSRSRSRSRSRDRSHRRTDSGRSSSRRRRSPSSRSRSRSPSSS
RTSRPRGRGRAVPSARGDDGPDRRAQHLPSHKEDYRDERSKEQRELDELT
KDQRTIFVSQLTMKVDERVVKRFFENFGKVRSVVMLRDRASGKHKGFAYV
EMADLEVIPNVLLMNDQQPDFQKFPIAVKASEAEKNYLAKQEAIAKGTVR
PDGGRKRNVGQPNKVFLGNLHPNITEEDLLELLKPFGEVQALVLARNEEG
VSKGFAFATFSEVEEAQTVMTQLGGVPLADRPIKVGPVNDRGVEAAAMGA
TSTPATGNWKLDDAGALPMNAASRADLMNKLGGGAGLSVPMPANPAAAAA
LQLQQQQQLQQMLLLQQQQQQQQQQQGPPPILGTPSRALLLKNMFSPMEE
KGDGWELDIQEDVEDECSKYGKIRHSAVDTRSPAGHVYMLFKEGEEEGAH
KSAQALNGRWPRRRRRQRSRSREGERECEAGMRVEDEDREEEEEEEEEEE
EEEEEEEEEEEEEEEMSMMVLVIALHLT*

Synonyms

Publications