NO19G02060, NO19G02060 (gene) Nannochloropsis oceanica

Overview
NameNO19G02060
Unique NameNO19G02060
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length237
Alignment locationchr19:598275..598511 -

Link to JBrowse

Properties
Property NameValue
DescriptionAnkyrin repeat-containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr19genomechr19:598275..598511 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR035969Rab-GTPase_TBC_sf
IPR000195Rab-GTPase-TBC_dom
Homology
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BLAST of NO19G02060 vs. NCBI_GenBank
Match: EWM23686.1 (ankyrin repeat-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 114.8 bits (286), Expect = 1.200e-22
Identity = 56/78 (71.79%), Postives = 61/78 (78.21%), Query Frame = 0 
Query:    1 MNVCTAILLTVTGNDEEAAFEMLVGLCERCQMEEMWMEGMPRLKACFAVLNRLLHLRTPALHALFEEAGVHVAMLSSK 79
            MN C A+LL VT NDEEAAF +LVGL E C M E+WMEGMPRLKACFAV +RLL +R P LHA F E GVHVAM SSK
Sbjct: 1027 MNTCVALLLMVTKNDEEAAFWLLVGLAEECGMREVWMEGMPRLKACFAVFDRLLRIRIPDLHAHFLETGVHVAMFSSK 1104
The following BLAST results are available for this feature:
BLAST of NO19G02060 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM23686.11.200e-2271.79ankyrin repeat-containing protein [Nannochloropsis... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL012nonsL012Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR034ncniR034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR039ngnoR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004546NSK004546Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO19G02060.1NO19G02060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|599342gene_7607Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO19G02060.1NO19G02060.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO19G02060 ID=NO19G02060|Name=NO19G02060|organism=Nannochloropsis oceanica|type=gene|length=237bp
ATGAATGTATGCACGGCAATCTTGTTGACAGTGACTGGGAATGACGAAGA
AGCGGCATTTGAGATGTTGGTGGGGTTGTGTGAGCGGTGTCAGATGGAGG
AGATGTGGATGGAGGGCATGCCGCGCTTGAAGGCTTGTTTTGCGGTGTTG
AATCGATTGTTGCACTTGCGGACGCCGGCTTTGCACGCGCTTTTTGAGGA
GGCTGGGGTGCATGTAGCCATGCTTTCGTCCAAGTAG
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protein sequence of NO19G02060.1

>NO19G02060.1-protein ID=NO19G02060.1-protein|Name=NO19G02060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=79bp
MNVCTAILLTVTGNDEEAAFEMLVGLCERCQMEEMWMEGMPRLKACFAVL
NRLLHLRTPALHALFEEAGVHVAMLSSK*
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Synonyms
Publications