NO19G01920, NO19G01920 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO19G01920
Unique Name	NO19G01920
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	5936
Alignment location	chr19:565372..571307 -

Link to JBrowse

Properties


Property Name	Value
Description	Protein pelota homolog

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr19	genome	chr19:565372..571307 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0071025	RNA surveillance
GO:0070481	nuclear-transcribed mRNA catabolic process, non-stop decay
GO:0070966	nuclear-transcribed mRNA catabolic process, no-go decay
GO:0009056	catabolic process

Vocabulary: **INTERPRO**
Term	Definition
IPR038069	Pelota/DOM34_N
IPR029064	L30e-like
IPR004405	Transl-rel_pelota
IPR005142	eRF1_3
IPR005141	eRF1_2
IPR005140	eRF1_1_Pelota

Vocabulary: **Cellular Component**
Term	Definition
GO:0005737	cytoplasm
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding
GO:0004518	nuclease activity

Homology

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BLAST of NO19G01920 vs. NCBI_GenBank
Match: EWM23676.1 (protein pelota [Nannochloropsis gaditana])

HSP 1 Score: 713.4 bits (1840), Expect = 4.500e-202
Identity = 377/461 (81.78%), Postives = 399/461 (86.55%), Query Frame = 0

Query:    1 MKLVSRDVSGKDGEGTVVLRPEEPEDMWAIYNLISEGDLVRTTTFRKVVKESATGSTTSSKIRLNLTIQVERVQFDPDTCVLRLSGRNREESEHVKMGAYHTLDLELQRNFTIQKTCWDTVVLDRLDEACDPVKQAEVAAIVMQPGLANICLLTGSMTIVRQRIDMSIPKKRAGNVAHDKALQKFYRATYEALIRHINFGLVKAVLLASPGFVNSDFFAFMNAEAQLKEDKPLLQNKAKFVLCHSSSGHKHALEEVLTQPGIQARLSDTKAVGEVQALGDFYAMLSAQPDRAHYGFNHVSVAAEHDAVEMLLMSDSIFRGRDFLARRRFVDLVESVKAKGGRFLCFSSLHVTGEKLHQLGGVAAVLRFPLEIEMEEEDLPLEEGG-----------KGSSSNGVCGGGXRGSNKDGDVGDFYSGEPIEQHEDEDREERHRAVEEEGMEAIREATDLEGMGL 451
            MKLVSRDVSGKDG GTVVLRPEEPEDMWAIYNLISEGDLVRTTTFRKVVKESATGSTTS+KIRLNLTIQV+R+QFDPDTCVLRLSG NREESEHVKMGAYHTLDLELQRNFTIQKTCWDTVVLDRLD+ACDPVKQAEVAAIVMQ GLANICLLTGSMT+VRQRIDM IPKKRAGNVAHDKA+QKFYRA YEA+ RHINF LVKAVLLASPGFVNSDFFAF+N+EAQLKEDK LLQNK+KFVLCHSSSGHKHALEEVLTQPGIQARL+DTKAVGEVQALGDF+AMLSAQPDRAHYGFNHV VAAEHDAVE LLMSDSIFRGRDFLARRR+VDLVE VKAKGGRFLCFSSLHVTGEKLHQLGGVAA+LRFPLEIEMEEEDLPLEE G            G+++    G      N  G  G    G+P    E  + EE   A  + G+      +D EGMGL
Sbjct:    1 MKLVSRDVSGKDGAGTVVLRPEEPEDMWAIYNLISEGDLVRTTTFRKVVKESATGSTTSNKIRLNLTIQVQRMQFDPDTCVLRLSGPNREESEHVKMGAYHTLDLELQRNFTIQKTCWDTVVLDRLDDACDPVKQAEVAAIVMQSGLANICLLTGSMTLVRQRIDMPIPKKRAGNVAHDKAIQKFYRAVYEAVTRHINFSLVKAVLLASPGFVNSDFFAFLNSEAQLKEDKSLLQNKSKFVLCHSSSGHKHALEEVLTQPGIQARLADTKAVGEVQALGDFFAMLSAQPDRAHYGFNHVQVAAEHDAVETLLMSDSIFRGRDFLARRRYVDLVEGVKAKGGRFLCFSSLHVTGEKLHQLGGVAAILRFPLEIEMEEEDLPLEEAGGXXXXXXXXXXXGAATKVDHGAAAGQENLTGSEG---GGKP---EEGTEAEETAWAGGDVGV------SDAEGMGL 449

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BLAST of NO19G01920 vs. NCBI_GenBank
Match: XP_008606219.1 (translation factor pelota [Saprolegnia diclina VS20] >EQC40520.1 translation factor pelota [Saprolegnia diclina VS20])

HSP 1 Score: 455.3 bits (1170), Expect = 2.200e-124
Identity = 209/370 (56.49%), Postives = 284/370 (76.76%), Query Frame = 0

Query:    1 MKLVSRDVSGKDGEGTVVLRPEEPEDMWAIYNLISEGDLVRTTTFRKVVKESATGSTTSSKIRLNLTIQVERVQFDPDTCVLRLSGRNREESEHVKMGAYHTLDLELQRNFTIQKTCWDTVVLDRLDEACDPVKQAEVAAIVMQPGLANICLLTGSMTIVRQRIDMSIPKKRAGNVAHDKALQKFYRATYEALIRHINFGLVKAVLLASPGFVNSDFFAFMNAEAQLKEDKPLLQNKAKFVLCHSSSGHKHALEEVLTQPGIQARLSDTKAVGEVQALGDFYAMLSAQPDRAHYGFNHVSVAAEHDAVEMLLMSDSIFRGRDFLARRRFVDLVESVKAKGGRFLCFSSLHVTGEKLHQLGGVAAVLRFPL 371
            MKL+ R +S KDG G+VVLR E+PEDMW ++NL+  GD V+TTT RKVVKE ATGSTTS ++R+ L +Q+E + FDP  C+LR+ G+N EE+ HV+MGAYHT+DLEL ++FT+ K CWD + L+R+D AC+  KQAE AA+VMQ GLA++CL+ G MT++R +++ SIP+KR GN +H K +++FY +  +A+ RH++F LVK VLLASPGFV  DF+ FM   A   +DK LL+NKAKF+LCH+SSGHKHAL+EVLT P +Q +L DTKA G+V+ L  F+ ML    D+A+YG+NHV  A    A++ LL++D++FR +D   RR+++DLVE+V+A GG    FSSLHV+G+KL QL GVAA+LRFPL
Sbjct:    1 MKLLKRSISEKDGNGSVVLRAEDPEDMWHVFNLMHRGDTVKTTTVRKVVKEGATGSTTSQRMRMTLCLQMEHIDFDPIKCLLRIRGKNVEENPHVRMGAYHTIDLELNKDFTLAKQCWDVMTLERIDTACNVAKQAEAAAVVMQAGLAHLCLIKGHMTVIRAKLETSIPRKRTGNTSHAKGMERFYDSIVQAIKRHVDFSLVKCVLLASPGFVKDDFYKFMMEYAVRSDDKVLLENKAKFILCHASSGHKHALDEVLTDPKVQVQLEDTKAAGDVKCLETFFEMLHTDQDKAYYGYNHVVKANTQMAIDTLLITDALFRSQDLAVRRKYIDLVENVRANGGHVRVFSSLHVSGDKLGQLSGVAALLRFPL 370

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BLAST of NO19G01920 vs. NCBI_GenBank
Match: XP_012198909.1 (translation factor pelota [Saprolegnia parasitica CBS 223.65] >KDO30272.1 translation factor pelota [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 454.9 bits (1169), Expect = 2.900e-124
Identity = 208/370 (56.22%), Postives = 285/370 (77.03%), Query Frame = 0

Query:    1 MKLVSRDVSGKDGEGTVVLRPEEPEDMWAIYNLISEGDLVRTTTFRKVVKESATGSTTSSKIRLNLTIQVERVQFDPDTCVLRLSGRNREESEHVKMGAYHTLDLELQRNFTIQKTCWDTVVLDRLDEACDPVKQAEVAAIVMQPGLANICLLTGSMTIVRQRIDMSIPKKRAGNVAHDKALQKFYRATYEALIRHINFGLVKAVLLASPGFVNSDFFAFMNAEAQLKEDKPLLQNKAKFVLCHSSSGHKHALEEVLTQPGIQARLSDTKAVGEVQALGDFYAMLSAQPDRAHYGFNHVSVAAEHDAVEMLLMSDSIFRGRDFLARRRFVDLVESVKAKGGRFLCFSSLHVTGEKLHQLGGVAAVLRFPL 371
            MKL+ R +S KDG G+V+LR E+PEDMW ++NL+  GD V+TTT RKVVKE ATGSTTS ++R+ L +Q+E + FDP  C+LR+ G+N EE+ HV+MGAYHT+DLEL ++FT+ K CWD + L+R+D AC+  KQAE AA+VMQ GLA++CL+ G MT++R +++ SIP+KR GN +H K +++FY +  +A+ RH++F LVK VLLASPGFV  DFF FM   A   +DK LL+NK+KF+LCH+SSGHKHAL+EVLT P +Q +L DTKA G+V+ L  F+ ML    D+A+YG+NHV  A +  A++ LL++D++FR +D   RR+++DLVE+V+A GG    FSSLHV+G+KL QL GVAA+LRFPL
Sbjct:    1 MKLLKRSISEKDGNGSVILRAEDPEDMWHVFNLMHRGDTVKTTTVRKVVKEGATGSTTSQRMRMTLCLQMEHIDFDPIKCLLRIRGKNVEENPHVRMGAYHTIDLELNKDFTLAKQCWDVMTLERIDMACNVAKQAEAAAVVMQAGLAHLCLIKGHMTVIRAKLETSIPRKRTGNTSHAKGMERFYDSIVQAIKRHVDFSLVKCVLLASPGFVKDDFFKFMMEYAVRSDDKLLLENKSKFILCHASSGHKHALDEVLTDPKVQVQLEDTKAAGDVKCLETFFEMLHTDQDKAYYGYNHVVKANQQMAIDTLLITDALFRSQDLAVRRKYIDLVENVRANGGHARVFSSLHVSGDKLGQLSGVAALLRFPL 370

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BLAST of NO19G01920 vs. NCBI_GenBank
Match: OQS02706.1 (pelota [Thraustotheca clavata])

HSP 1 Score: 453.8 bits (1166), Expect = 6.400e-124
Identity = 207/370 (55.95%), Postives = 286/370 (77.30%), Query Frame = 0

Query:    1 MKLVSRDVSGKDGEGTVVLRPEEPEDMWAIYNLISEGDLVRTTTFRKVVKESATGSTTSSKIRLNLTIQVERVQFDPDTCVLRLSGRNREESEHVKMGAYHTLDLELQRNFTIQKTCWDTVVLDRLDEACDPVKQAEVAAIVMQPGLANICLLTGSMTIVRQRIDMSIPKKRAGNVAHDKALQKFYRATYEALIRHINFGLVKAVLLASPGFVNSDFFAFMNAEAQLKEDKPLLQNKAKFVLCHSSSGHKHALEEVLTQPGIQARLSDTKAVGEVQALGDFYAMLSAQPDRAHYGFNHVSVAAEHDAVEMLLMSDSIFRGRDFLARRRFVDLVESVKAKGGRFLCFSSLHVTGEKLHQLGGVAAVLRFPL 371
            MKL+ R+++ KDG G+VVLR E+PEDMW ++NL+ +GD V+TTT RKV+KE ATGSTTS ++R+ L++Q+E + FDP  C+LR+ G+N EE+ HV+MGAYHT+DLE+ ++FT+ K CWD + L+R+D AC+  KQAE AA+VMQ GLA++CL+ G MT++R +++ SIP+KR GN AH K ++KFY +  +A+ RH++F LVK VLLASPGFV  DF  FM   A   +DK LL+NK+KF+LCH+SSGHKHAL+EVLT P +  +L DTKA G+V+ L  F+ ML    D+A+YG+NHV  A +  A+E LL++D++FR +D   RR++VDLVESV+  GG+   FSSLHV+G+KL QL G+AA+LRFPL
Sbjct:    1 MKLLKRNINEKDGNGSVVLRAEDPEDMWHVFNLMHKGDTVKTTTVRKVIKEGATGSTTSQRVRMTLSLQMEHIDFDPAKCLLRIRGKNVEENPHVRMGAYHTIDLEMNKDFTLSKQCWDLMTLERIDTACNVAKQAEAAAVVMQAGLAHLCLIKGHMTVIRAKLEASIPRKRTGNTAHAKGMEKFYDSIVQAIKRHVDFTLVKCVLLASPGFVKDDFHKFMMEYAIRTDDKVLLENKSKFILCHASSGHKHALDEVLTDPKVLVQLEDTKAAGDVKCLESFFEMLHTDQDKAYYGYNHVVKANQQMAIETLLITDALFRSQDIATRRKYVDLVESVRGNGGQVRVFSSLHVSGDKLGQLSGIAALLRFPL 370

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BLAST of NO19G01920 vs. NCBI_GenBank
Match: OQR95204.1 (protein pelota [Achlya hypogyna])

HSP 1 Score: 449.9 bits (1156), Expect = 9.300e-123
Identity = 206/370 (55.68%), Postives = 286/370 (77.30%), Query Frame = 0

Query:    1 MKLVSRDVSGKDGEGTVVLRPEEPEDMWAIYNLISEGDLVRTTTFRKVVKESATGSTTSSKIRLNLTIQVERVQFDPDTCVLRLSGRNREESEHVKMGAYHTLDLELQRNFTIQKTCWDTVVLDRLDEACDPVKQAEVAAIVMQPGLANICLLTGSMTIVRQRIDMSIPKKRAGNVAHDKALQKFYRATYEALIRHINFGLVKAVLLASPGFVNSDFFAFMNAEAQLKEDKPLLQNKAKFVLCHSSSGHKHALEEVLTQPGIQARLSDTKAVGEVQALGDFYAMLSAQPDRAHYGFNHVSVAAEHDAVEMLLMSDSIFRGRDFLARRRFVDLVESVKAKGGRFLCFSSLHVTGEKLHQLGGVAAVLRFPL 371
            MKL+ R +S KDG G+VVLR E+PEDMW ++NL+ +GD V+TTT RKV+KE  TGSTTS ++R+ L +++E + FDP  C+LR+ G+N EE+ HV+MGAYHT+DLEL ++FT+ K CWD + L+R+D AC+  KQAE AA+VMQ GLA++CL+ G MT++R +++ SIP+KRAGN +H K +++FY +  +A+ RH++F LVK VLLASPGFV  DF  FM   A   +DK LL+NK+KF+LCH+SSGHKHAL+EVLT P +Q++L DTKA G+V+ L  F+ ML    D+A+YG+NHV  A    A++ LL++D++FR ++   RR++VDLVE+V+A GG+   FSSLHV+G+KL QL GVAA+LRFPL
Sbjct:    1 MKLLKRSISEKDGTGSVVLRAEDPEDMWHVFNLMHKGDTVKTTTVRKVIKEGTTGSTTSQRVRMTLCLEMEHIDFDPAKCLLRIRGKNVEENPHVRMGAYHTIDLELSKDFTLAKQCWDLMSLERIDTACNVAKQAEAAAVVMQAGLAHVCLIKGHMTVIRAKLETSIPRKRAGNTSHAKGMERFYDSIVQAIKRHVDFALVKCVLLASPGFVKDDFHKFMMEYALRADDKVLLENKSKFILCHASSGHKHALDEVLTDPKVQSQLEDTKAAGDVKCLEAFFEMLHTDQDKAYYGYNHVVKANGQMAIDTLLITDALFRSQEIAVRRKYVDLVEAVRANGGQVRVFSSLHVSGDKLGQLSGVAALLRFPL 370

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BLAST of NO19G01920 vs. NCBI_GenBank
Match: GAY00263.1 (mRNA surveillance protein pelota [Pythium insidiosum])

HSP 1 Score: 449.9 bits (1156), Expect = 9.300e-123
Identity = 213/370 (57.57%), Postives = 284/370 (76.76%), Query Frame = 0

Query:    1 MKLVSRDVSGKDGEGTVVLRPEEPEDMWAIYNLISEGDLVRTTTFRKVVKESATGSTTSSKIRLNLTIQVERVQFDPDTCVLRLSGRNREESEHVKMGAYHTLDLELQRNFTIQKTCWDTVVLDRLDEACDPVKQAEVAAIVMQPGLANICLLTGSMTIVRQRIDMSIPKKRAGNVAHDKALQKFYRATYEALIRHINFGLVKAVLLASPGFVNSDFFAFMNAEAQLKEDKPLLQNKAKFVLCHSSSGHKHALEEVLTQPGIQARLSDTKAVGEVQALGDFYAMLSAQPDRAHYGFNHVSVAAEHDAVEMLLMSDSIFRGRDFLARRRFVDLVESVKAKGGRFLCFSSLHVTGEKLHQLGGVAAVLRFPL 371
            MKL+ + +S KDG G++VLR EEPEDMW IYNLI  GD V+TTT RKVVKE  TGST+S ++RL L I+VE+V FDP  CVLR+ G+N  E++HV+MGAYHTLDLE+ R+FT+ K CWD + ++R++ ACD  K+AE+AA+VMQ GLA++CL+ G MT+++ +I+ S+PKKR G+ AH K L+KFY     ++ +HI+F LVK VLLASPGFV  DF+ +M   A   +DK L +NK+KFVLCH+SSGHKHAL+EVL  P IQ++++DTKAV +V+AL  F+ ML    DRA+YG+ HV+ A EH A+E LL++D +FR ++   RR++VDLVESV+  GG    FSSLHV+GEKL QL GVAA+LRFP+
Sbjct:    1 MKLLKKQISEKDGVGSIVLRAEEPEDMWHIYNLIHVGDSVKTTTIRKVVKEGVTGSTSSQRVRLTLQIEVEQVNFDPGQCVLRIKGKNSLENQHVRMGAYHTLDLEMNRDFTLSKQCWDVMSIERIETACDISKRAELAAVVMQTGLAHLCLIKGHMTVIKAKIETSVPKKRTGSTAHAKGLEKFYENIVRSIKQHIDFKLVKCVLLASPGFVKDDFYKYMTELAIRTDDKLLAENKSKFVLCHASSGHKHALDEVLNDPAIQSQVADTKAVEDVKALEMFFNMLHVDQDRAYYGYKHVTQANEHLAIETLLITDELFRSQEIATRRKYVDLVESVRENGGIVRLFSSLHVSGEKLGQLSGVAAILRFPM 370

[Close]

BLAST of NO19G01920 vs. NCBI_GenBank
Match: ETO67358.1 (mRNA surveillance protein pelota [Phytophthora parasitica P1976])

HSP 1 Score: 446.8 bits (1148), Expect = 7.900e-122
Identity = 212/370 (57.30%), Postives = 282/370 (76.22%), Query Frame = 0

Query:    1 MKLVSRDVSGKDGEGTVVLRPEEPEDMWAIYNLISEGDLVRTTTFRKVVKESATGSTTSSKIRLNLTIQVERVQFDPDTCVLRLSGRNREESEHVKMGAYHTLDLELQRNFTIQKTCWDTVVLDRLDEACDPVKQAEVAAIVMQPGLANICLLTGSMTIVRQRIDMSIPKKRAGNVAHDKALQKFYRATYEALIRHINFGLVKAVLLASPGFVNSDFFAFMNAEAQLKEDKPLLQNKAKFVLCHSSSGHKHALEEVLTQPGIQARLSDTKAVGEVQALGDFYAMLSAQPDRAHYGFNHVSVAAEHDAVEMLLMSDSIFRGRDFLARRRFVDLVESVKAKGGRFLCFSSLHVTGEKLHQLGGVAAVLRFPL 371
            MKL+ + +S KDG G+VVLR EEPEDMW IYNLI   D V+TTT RKVVKE  TGST+S ++R+ L I+VE+V FDP  CVLR+ G+N  ES+HV++GAYHTLDLE+ R+FT+ K CWD + L+R++ ACD  KQAE+AA+VMQ GLA++CL+ G MT++R +I+ S+PKKR G+ AH K  +KFY     ++ +HI+F LVK VLLASPGFV  DFF FM  +A  ++DK +L+NK KFVLCHSSSGHKHAL+EVL  P IQ++++DTKAV +V+ L  F+ ML    DRA+YG+ HV  A  + A+E L+++D++FR +D   RR++VDLVESV+  GG    FSSLHV+GEKL Q+ G+AA+LRFP+
Sbjct:    1 MKLLKKQISEKDGAGSVVLRAEEPEDMWHIYNLIHVSDSVKTTTIRKVVKEGVTGSTSSQRVRMTLQIEVEQVNFDPALCVLRIKGKNIMESQHVRLGAYHTLDLEMNRDFTLTKNCWDVMSLERIEMACDITKQAELAAVVMQVGLAHLCLIKGDMTVIRAKIETSVPKKRPGSSAHAKGTEKFYENIVRSIRQHIDFKLVKCVLLASPGFVKDDFFKFMIEQAVRQDDKLILENKPKFVLCHSSSGHKHALDEVLNDPAIQSQVADTKAVEDVKCLERFFNMLHIDQDRAYYGYKHVERANSNMAIETLMITDALFRSQDIATRRKYVDLVESVRDNGGTVRLFSSLHVSGEKLGQVSGIAAILRFPM 370

[Close]

BLAST of NO19G01920 vs. NCBI_GenBank
Match: XP_008895295.1 (mRNA surveillance protein pelota [Phytophthora parasitica INRA-310] >ETI38587.1 mRNA surveillance protein pelota [Phytophthora parasitica P1569] >ETK78790.1 mRNA surveillance protein pelota [Phytophthora parasitica] >ETL32220.1 mRNA surveillance protein pelota [Phytophthora parasitica] >ETL85477.1 mRNA surveillance protein pelota [Phytophthora parasitica] >ETM38621.1 mRNA surveillance protein pelota [Phytophthora parasitica] >ETN19444.1 mRNA surveillance protein pelota [Phytophthora parasitica INRA-310] >ETP08494.1 mRNA surveillance protein pelota [Phytophthora parasitica CJ01A1] >ETP36534.1 mRNA surveillance protein pelota [Phytophthora parasitica P10297] >ETP36535.1 mRNA surveillance protein pelota, variant [Phytophthora parasitica P10297] >KUF80268.1 pelota protein [Phytophthora nicotianae])

HSP 1 Score: 446.4 bits (1147), Expect = 1.000e-121
Identity = 212/370 (57.30%), Postives = 282/370 (76.22%), Query Frame = 0

Query:    1 MKLVSRDVSGKDGEGTVVLRPEEPEDMWAIYNLISEGDLVRTTTFRKVVKESATGSTTSSKIRLNLTIQVERVQFDPDTCVLRLSGRNREESEHVKMGAYHTLDLELQRNFTIQKTCWDTVVLDRLDEACDPVKQAEVAAIVMQPGLANICLLTGSMTIVRQRIDMSIPKKRAGNVAHDKALQKFYRATYEALIRHINFGLVKAVLLASPGFVNSDFFAFMNAEAQLKEDKPLLQNKAKFVLCHSSSGHKHALEEVLTQPGIQARLSDTKAVGEVQALGDFYAMLSAQPDRAHYGFNHVSVAAEHDAVEMLLMSDSIFRGRDFLARRRFVDLVESVKAKGGRFLCFSSLHVTGEKLHQLGGVAAVLRFPL 371
            MKL+ + +S KDG G+VVLR EEPEDMW IYNLI   D V+TTT RKVVKE  TGST+S ++R+ L I+VE+V FDP  CVLR+ G+N  ES+HV++GAYHTLDLE+ R+FT+ K CWD + L+R++ ACD  KQAE+AA+VMQ GLA++CL+ G MT++R +I+ S+PKKR G+ AH K  +KFY     ++ +HI+F LVK VLLASPGFV  DFF FM  +A  ++DK +L+NK KFVLCHSSSGHKHAL+EVL  P IQ++++DTKAV +V+ L  F+ ML    DRA+YG+ HV  A  + A+E L+++D++FR +D   RR++VDLVESV+  GG    FSSLHV+GEKL Q+ G+AA+LRFP+
Sbjct:    1 MKLLKKQISEKDGAGSVVLRAEEPEDMWHIYNLIHVSDSVKTTTIRKVVKEGVTGSTSSQRVRMTLQIEVEQVNFDPALCVLRIKGKNIMESQHVRLGAYHTLDLEMNRDFTLTKNCWDVMSLERIEMACDITKQAELAAVVMQVGLAHLCLIKGDMTVIRAKIETSVPKKRPGSSAHAKGTEKFYENIVRSIRQHIDFKLVKCVLLASPGFVKDDFFKFMIEQAVRQDDKLILENKPKFVLCHSSSGHKHALDEVLNDPAIQSQVADTKAVEDVKCLERFFNMLHIDQDRAYYGYKHVERANANMAIETLMITDALFRSQDIATRRKYVDLVESVRDNGGTVRLFSSLHVSGEKLGQVSGIAAILRFPM 370

[Close]

BLAST of NO19G01920 vs. NCBI_GenBank
Match: XP_002905449.1 (protein pelota [Phytophthora infestans T30-4] >EEY68290.1 protein pelota [Phytophthora infestans T30-4])

HSP 1 Score: 446.4 bits (1147), Expect = 1.000e-121
Identity = 212/370 (57.30%), Postives = 282/370 (76.22%), Query Frame = 0

Query:    1 MKLVSRDVSGKDGEGTVVLRPEEPEDMWAIYNLISEGDLVRTTTFRKVVKESATGSTTSSKIRLNLTIQVERVQFDPDTCVLRLSGRNREESEHVKMGAYHTLDLELQRNFTIQKTCWDTVVLDRLDEACDPVKQAEVAAIVMQPGLANICLLTGSMTIVRQRIDMSIPKKRAGNVAHDKALQKFYRATYEALIRHINFGLVKAVLLASPGFVNSDFFAFMNAEAQLKEDKPLLQNKAKFVLCHSSSGHKHALEEVLTQPGIQARLSDTKAVGEVQALGDFYAMLSAQPDRAHYGFNHVSVAAEHDAVEMLLMSDSIFRGRDFLARRRFVDLVESVKAKGGRFLCFSSLHVTGEKLHQLGGVAAVLRFPL 371
            MKL+ + ++ KDG G+VVLR EEPEDMW IYNLI   D V+TTT RKVVKE  TGST+S ++R+ L I+VE+V FDP  CVLR+ G+N  ES+HV++GAYHTLDLE+ R+FT+ K CWD + L+R++ ACD  KQAE+AA+VMQ GLA++CL+ G MT++R +I+ S+PKKR GN AH K  +KFY     ++ +HI+F LVK VLLASPGFV  DFF FM  +A  ++DK +L+NK KFVLCHSSSGHKHAL+EVL+ P IQ +++DTKAV +V+ L  F+ ML    DRA+YG+ HV  A  + A+E L+++D++FR +D   RR++VDLVESV+  GG    FSSLHV+GEKL Q+ G+AA+LRFP+
Sbjct:    1 MKLLKKQINEKDGAGSVVLRAEEPEDMWHIYNLIHVSDSVKTTTIRKVVKEGVTGSTSSQRVRMTLHIEVEQVNFDPALCVLRIKGKNIMESQHVRLGAYHTLDLEMNRDFTLTKNCWDVMSLERIEMACDITKQAELAAVVMQVGLAHLCLIKGDMTVIRAKIETSVPKKRPGNSAHAKGTEKFYENIVRSIRQHIDFKLVKCVLLASPGFVKDDFFKFMIEQAVRQDDKLILENKPKFVLCHSSSGHKHALDEVLSDPAIQMQVADTKAVEDVKCLERFFNMLHIDQDRAYYGYKHVVQANANMAIETLMITDALFRSQDIATRRKYVDLVESVRENGGTVRLFSSLHVSGEKLGQVSGIAAILRFPM 370

[Close]

BLAST of NO19G01920 vs. NCBI_GenBank
Match: XP_009538777.1 (hypothetical protein PHYSODRAFT_307605 [Phytophthora sojae] >EGZ05916.1 hypothetical protein PHYSODRAFT_307605 [Phytophthora sojae])

HSP 1 Score: 443.0 bits (1138), Expect = 1.100e-120
Identity = 211/370 (57.03%), Postives = 282/370 (76.22%), Query Frame = 0

Query:    1 MKLVSRDVSGKDGEGTVVLRPEEPEDMWAIYNLISEGDLVRTTTFRKVVKESATGSTTSSKIRLNLTIQVERVQFDPDTCVLRLSGRNREESEHVKMGAYHTLDLELQRNFTIQKTCWDTVVLDRLDEACDPVKQAEVAAIVMQPGLANICLLTGSMTIVRQRIDMSIPKKRAGNVAHDKALQKFYRATYEALIRHINFGLVKAVLLASPGFVNSDFFAFMNAEAQLKEDKPLLQNKAKFVLCHSSSGHKHALEEVLTQPGIQARLSDTKAVGEVQALGDFYAMLSAQPDRAHYGFNHVSVAAEHDAVEMLLMSDSIFRGRDFLARRRFVDLVESVKAKGGRFLCFSSLHVTGEKLHQLGGVAAVLRFPL 371
            MKL+ + +S KDG G+VVLR EEPEDMW IYNLI   D V+TTT RKVVKE  TGST+S ++R+ L I+VE+V FDP  CVLR+ G+N  ES++V+MGAYHTLDLE+ R+FT+ K CWD + L+R++ ACD  KQAE+AA+VMQ GLA++CL+ G MT++R +I+ S+PKKR G+ AH K  +KFY     ++ +HI+F LVK VLLASPGFV  DF+ FM  +A  ++DK +L+NK KFVLCHSSSGHKHAL+EVL  P IQ++++DTKAV +V+ L  F+ ML    DRA+YG+ HV  A  + A+E L+++D++FR +D   RR++VDLVESV+  GG    FSSLHV+GEKL Q+ G+AA+LRFP+
Sbjct:  542 MKLLKKQISEKDGAGSVVLRAEEPEDMWHIYNLIHVSDSVKTTTIRKVVKEGVTGSTSSQRVRMTLQIEVEQVNFDPVLCVLRIKGKNVMESQYVRMGAYHTLDLEMNRDFTLAKNCWDVMSLERIEMACDIAKQAELAAVVMQVGLAHLCLIKGDMTVIRAKIETSVPKKRPGSSAHAKGTEKFYENIVRSIRQHIDFKLVKCVLLASPGFVKDDFYKFMIEQAVRQDDKLILENKPKFVLCHSSSGHKHALDEVLNDPAIQSQVADTKAVEDVKCLERFFNMLHIDQDRAYYGYKHVVRANANMAIETLMITDALFRSQDIATRRKYVDLVESVRDNGGTVRLFSSLHVSGEKLGQVSGIAAILRFPM 911

The following BLAST results are available for this feature:

BLAST of NO19G01920 vs. NCBI_GenBank

BLAST of NO19G01920 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM23676.1	4.500e-202	81.78	protein pelota [Nannochloropsis gaditana]	[more]
XP_008606219.1	2.200e-124	56.49	translation factor pelota [Saprolegnia diclina VS2...	[more]
XP_012198909.1	2.900e-124	56.22	translation factor pelota [Saprolegnia parasitica ...	[more]
OQS02706.1	6.400e-124	55.95	pelota [Thraustotheca clavata]	[more]
OQR95204.1	9.300e-123	55.68	protein pelota [Achlya hypogyna]	[more]
GAY00263.1	9.300e-123	57.57	mRNA surveillance protein pelota [Pythium insidios...	[more]
ETO67358.1	7.900e-122	57.30	mRNA surveillance protein pelota [Phytophthora par...	[more]
XP_008895295.1	1.000e-121	57.30	mRNA surveillance protein pelota [Phytophthora par...	[more]
XP_002905449.1	1.000e-121	57.30	protein pelota [Phytophthora infestans T30-4] >EEY...	[more]
XP_009538777.1	1.100e-120	57.03	hypothetical protein PHYSODRAFT_307605 [Phytophtho...	[more]

Pages

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL012	nonsL012	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR034	ncniR034	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR039	ngnoR039	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO19G01920.1	NO19G01920.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|632367	gene_7595	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO19G01920.1	NO19G01920.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO19G01920 ID=NO19G01920|Name=NO19G01920|organism=Nannochloropsis oceanica|type=gene|length=5936bp
ACAGATCTTCATTTAATTTCTCTGTTTTGTATTCTTTATCGTCCATCCGC
GTAGTGATGATAAAAATCAAGCATTTGAGGAGTAATTTGTCGCTGCCAGC
CCGTCAAGACCTGGTCAAGGTGCCGACCTTGCAGCGAGTGGGCATTCACC
GGGTCTTCCTCTATCGCACAGAGAGCAGCTTCTCGACACAAAGCCACCAT
CTCTGCCCCCGAGAACCCCTCCGTGCGCCGCGCGATTTCATTCAAGTTCA
ACATTTCACCGCAAATCGCCTCTCCATCCCTTTCTCCACCCGTGTACTCC
CCAGGCATACCGCGCAACGCAATGCGAAGAATTTCGAAGCGGGAAGCCGT
GTCGGGCGGTGGCACGTAGACCTTGCGGTCAATGCGGCCGGGCCGAAGCA
GGGCTGGATCCAGCAAGTCGGGGCGATTGGTAGCTGCCACCACCACCACG
CGCCGTAAAGGCTGCACGCCATCCAGCTCTGTCAGCAACTGGCTCAACAC
CCTTTCTGAGGCCTTGGAGTCTTCGCCCTCACCCCGCCGCCCCGCCAGCG
CATCCACCTCATCGAAAAATATAACTGTGGGCGCAGCCGCCCGCGCTTTT
TTAAAGAGTGCCTTCAGGGCCTTCTCGCTCTCGCCCAGCCATTTGCTGAG
GAGCTCTGGTCCCTTGACGGCCAAGAAATTCATACCGGACTCGGTGGCAA
GGGCGCGGGCCATTAGCGTTTTGCTACAACCTGGCGGTCCGTAGAGAAGC
ACTCCCTTGGGTGGGGGGATGCCCATGCGCACGAATGCTTCAGGTCGAGT
GAGCGGCCATTCCACGCACTCCTGCAACGCACGCTTCACCTCACTCATGC
CCCCAATATCCCCCCAGCGCACCCGCGGCACCTCCACCGCTACTTCCCGA
AGTGCGCTTGGTCGGACTCGGGCTAGGCCCGCCAGCAAGTCCTCGCCTGT
CACCTGCACATTGCCCTCTTGGACCCCACCCTCTTCTACGCGAGTTGACT
GTTTTACTACTCGTCTCGCTGCAAGCATGGCTGCTTCCTTGCATACAAGC
AACAGGTCTGCGCCCACAAACCCATGTGCGCGACTAGCCACCCGCTGCAT
GTCTTCCTCCGAGACTTTCATGATTGTGGGGCCTGCCTGTCGGAGCAGCA
CCTTGAGGATGTCTTTCCGTGCCGCCTCCCCGGGCACGCCTAGGTCGATC
TCTCGGTCCAGCCGACCTGGACGCCGCACTGCGGAGTCAAGTGCATGCGG
TCTGCTCGTGGCAGCGAGAACTACAACTCGCTCCATCCCCTGAAAGCCGT
CCAACAAGGCCAAGAAGGTGGCCACCATGCGTTTGTCTAGGTCTGAGGAA
GTAGCGTCTCGCCGTAAGCACAAGGCCTCCACCTCGTCGAGCACTATCAC
GGTGGGTGCCATTGCTTTCGCCTCTTGAAATGCCTGACGCAGCTTGGTCT
CTGTCTCTCCCACCAAGCGCCCCCCAAACTCTGGCCCGCCCAGTCGCATC
ACGTTGTAGCCTTTGCAATCAGCAAAATATTGAGCCGCCGCTCTGTATGT
TGAGGAGGGGGGTTGGAGGTGAAAAAAAGCATAAGAGAGACTTCCAACAA
GGAACTGTATTAGAATTGACACAAGAATAATCTTTCGTGGAACCAACAGT
TTTTCACATACCGGAGAAGTGTCGTCTTGCCCGTGCCACTGGGGCCGACC
ACCAAGAGACCCCGCGTCGGCCGCAACCCGTGCTGAGCAAAAACTTCCGG
AGATTCCAACGATTGCTCGACGCCCTCTCGTATCTCCTGAACAGCTATTT
GAAGCCCGCCCACTGTAGCCCAGCAAGCGTCTCCATTGTTCTGTGTGTCT
GTTGCCCTTTCAATTTTAGGCTTATCCTCTTCATAGACGTCTCTCTCGGA
TGCCCCTCTTGGAGGACGATTTACCACTCTCACCCTCGTGCGCCGCCCCA
CCTTGTACATAAGATTTGATATGGTGACATCATGACCCTCATTGGTGCTG
TCCTTGTCGGCGAGTGAAAGCGCTGTCAAGTCCGGGAGAGACACTCTTTT
GTCTACCTGATCTCCTTTGGATGAGGAAGTCTCCTCCAGTGCCGTTAGCT
CCACAACCTCAAAGGTGGCACGGGCAGCAAAGCTAGCAAAGGTCAGGCGC
AGGCCAGGATAAAGGAGGTGCCCTACCAATACGTCCTTTAGTCTTGCCTT
CCAAAGAACTGCAGTCGCACCTCTACTGCACGAATTTGTTGTTATTGTAT
TCCATCCCGTCTCATCCTCCATCCCCTCCTCTTGGTCTGGTGGTACGACG
CGCAGGGCCACCTCGGAGGCAGCGACTTGTCGCACCGACCTGAACAGCGC
ACGGATAGAGACATAACACTCCTGTCCAGCCTCTTTAATGCGGGGGTATT
GGCCCAAGATAAACGGGCCTGTCCCGGCCGCTACCCCGGATGGCCCACTG
CTTCCTGGCCAGGCCCTCAGTGCTACTAGTTGGGAGCATTTTAGTCCTCG
TCGCGGCGGAGTTTGGCATTCGGTGCCCGACGATGGAGAGGATGGTGTGG
AGGGCGAGGAATGAATTACGACCCAGTCGCCTGCCTTGACTCCCAGGCGC
CGACAGTCTAGTGGGGTCAGGAGCAGCCGATCGGGTGGGGAGGGCGACGA
TGCCGGGGCATGCAGAAGTAAAACATCGTCCAGCTGATCTGTCGGTTCTA
CGTCCTCATGCTGCTGCTGCCGCCGTTTCTTACTACCAGAAGACCACGGC
ATGGCCATCTGCCTTCCTCTACCTCCTGCAGATCATTTGCAAAGCGTATG
AGGTATGCCGATGTATGCAGTAATTTCCAGATATCAGAGGAAGGAAGTTG
GTTGCGGTTGTTGGTTGTCGTGTTTTAAAAGTAGCTTGAGGGACACCTGG
ATCGATTGAATGAGAGGCACAGACATGCGCTAGAGAGTGCAGACCTTCAC
GGATGCTGCAGAAGTCTGAAACGCCGCTCTCCCTGACCTTCACCGCTTCA
TTCCCCTCTGACCAAAGAAACTCACCTTTACCCGTGGGAGAGGGCGTCGA
AAGCCGATCACTAGTTCCGGACCCTGCTCCTCCTCCCTTTTTGGTTGACG
TCAATGGCATGTCCGAAGCGCGAGTTTCCTCCTGTATGTTTGAGTGATGT
GGTGGTAAGCGCATAACCGCGGTCTCGGCGGATTAACGTCCGCACCACCG
CCCCCTCGAGATCTGCCCATTTCAAGAAAGTTAAAGAAAGTTTCTTTTCA
CGACACAGCAACACTAAGAAGTAGCCCGCAAACGTGCGCGACAAGAGCCT
CCACACCAAGGCGACTTTCTCCGTACCTGACATGAAGCTGGTGAGCCGGG
ACGTGAGCGGGAAGGATGGAGAAGGAACGGTGGTATTGCGGCCCGAGGAA
CCCGAGGACATGTGGGCGATCTACAATTTAATAAGTGAGGGAGACCTGGT
GCGGACCACGACTTTCCGCAAGGTGGTCAAGGAAAGTGCCACGGGCTCAA
CGACCAGCAGCAAAATCCGCCTGAACCTAACCATCCAGGTGGAACGCGTG
CAGTTCGACCCAGACACGTGTGTCCTGCGCTTGAGTGGCCGGAATCGGGA
GGAATCGGAGCACGTCAAGgtaagaaaggagaatgacagaggtgcacgct
cacattttaaactttgtcctgcccgtccaatatctcagATGGGGGCATAC
CATACCTTGGATCTGGAGTTGCAGCGGAATTTTACCATCCAAAAGACCTG
CTGGGACACGGTGGTGCTCGACCGTTTGGACGAGGCTTGCGACCCTGTCA
AGCAGGCCGAAGTCGCTGCCATTGTTATGCAGCCCGGTCTGGCCAATATC
TGCCTTCTTACGGGCTCTATGACCATCGTGCGGCAACGGATCGATgtacg
tctccggtacttgctctttgactctgggttacggtctagtctgcttgttg
ctgttcaagccattggtggttggtggaacagttgccgggtatcattctcg
tcttttctttcgttatcatgattttcctgactcttcatttatctgggtcc
ccatcttctccttcaagctactgtcccccccacctgaatcttctctcatc
cccaacccttccctcagATGTCCATCCCGAAGAAGCGGGCCGGAAATGTT
GCCCACGACAAGGCTTTGCAGAAATTCTACCGCGCCACGTACGAGGCCCT
CATAAGACACATTAATTTCGGGTTGGTAAAGGCTGTGCTGTTGGCAAGTC
CTGGCTTCGTGAATTCAGACTTCTTTGCCTTCATGAACGCCGAGGCCCAG
CTGAAGGAGGACAAGCCGCTGCTGCAGAACAAAGCCAAATTTGTGCTCTG
CCACTCCTCTTCGGGCCACAAGCATGCGCTTGAAGAGGTACTGACACAAC
CCGGCATCCAGGCACGCTTGTCGGACACCAAGGCGGTGGGCGAGGTGCAG
GCTTTGGGGGACTTTTACGCCATGCTCTCGGCCCAGCCAGACCGCGCGCA
CTACGGCTTCAACCACGTGAGTGTAGCAGCCGAACATGACGCAGTGGAAA
TGTTGCTCATGAGCGACTCCATCTTCCGGGGCCGCGACTTCCTGGCGCGC
CGCCGCTTTGTGGACCTGGTGGAAAGCGTCAAGGCCAAAGGCGGCCGCTT
TCTGTGCTTCTCCAGCTTGCACGTAACCGGCGAGAAGTTGCATCAGCTGG
GCGGCGTGGCGGCGGTGCTGCGTTTTCCCTTAGAGATCGAAATGGAGGAA
GAGGACTTACCGCTGGAGGAGGGAGGTAAGGGAAGCAGCAGTAACGGCGT
TTGTGGCGGCGGCGGGAGAGGCTCAAACAAGGACGGAGATGTCGGGGACT
TCTACAGTGGGGAGCCCATAGAACAGCATGAGGATGAAGACAGAGAAGAG
CGCCACAGGGCTGTCGAAGAGGAGGGTATGGAGGCAATAAGAGAAGCCAC
TGACTTGGAAGGAATGGGCTTGTAAAAAGAATGAAATCTTTCACATACAT
ACTATTCTTTTGTTTTTGGTCAATTATTTCAATTTCGAGAATCACGCGAA
GGCTTGATCAAACCAAACAACAGAGAAAAAAACATTTGTGCATATGACTG
CTCCATTCATCACTTCAGATGTTGCAACATAGGCACACACGCATGTTCCG
TTCTGTAATAAAAAATCTGTTAATACCTAGCTCCGTGATCTTTCTTTACT
CCTTCTTCTTCAAGGCCTCTAGCGGCACAGGTCCCTGCAGCGCCCGTCGC
CGAGCTTGCGCCTCCTGACGCTCCTCTTCTTCCAACCGAGCATTATCCTC
TTTCTCCTCTTCCTTGTAACGCTTCACTGCCACCACGAACGAGGCAACAA
AGCCAGGACCCGCAATCGCCACCACAGCGGTTGTGCCCATCAGCCCCAAA
AGTGGTTTGCCACCCGCGAGCTCCGCGAGCGATCCCGTGAAGCTGATTCC
CAGCATCATGGATAAGAAGAGGAAGCCGTAGGCCGGAAAGCGGAAGGGCC
GGTCGGGCTCTGGGCTGGTTGCTTTAGGACCCCCCAAACTTGGCAGCGGC
AGCCGGTCCACGGTGGTTTTTACGGCATCCCCGAACGCACTGCTTTGATT
CGCCTTTTCTGCCTCTTCAAACAGACGGTCCAGCTCCCGCTTCTCCGGCT
TGTCCTCGCCTTCAGCAGCACGCAGCGGTCCTAGCCTCCTACTCCTGCTG
CTGTAGCTGATGCAGCTGCTGCTGGTCTTGGTCCCGCAGTGGCTGCTCCT
CGACATAGCAGCGGTGCAAGACGTTCTCCAACTGCGGTAGATCGGGACAA
CAAACGCGTGACTCGAGGACAGGAGTAGAAGGGACAGCAGCAGCACAAGG
ATTTTCATCATGGGATGTGTGTGCTGGGTCTGCTAGGCAGCGTTCTAAAC
GGAAGTAGGGCGCACCGGCAAATCGGCAGGACCCTG

protein sequence of NO19G01920.1

>NO19G01920.1-protein ID=NO19G01920.1-protein|Name=NO19G01920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=451bp
MKLVSRDVSGKDGEGTVVLRPEEPEDMWAIYNLISEGDLVRTTTFRKVVK
ESATGSTTSSKIRLNLTIQVERVQFDPDTCVLRLSGRNREESEHVKMGAY
HTLDLELQRNFTIQKTCWDTVVLDRLDEACDPVKQAEVAAIVMQPGLANI
CLLTGSMTIVRQRIDMSIPKKRAGNVAHDKALQKFYRATYEALIRHINFG
LVKAVLLASPGFVNSDFFAFMNAEAQLKEDKPLLQNKAKFVLCHSSSGHK
HALEEVLTQPGIQARLSDTKAVGEVQALGDFYAMLSAQPDRAHYGFNHVS
VAAEHDAVEMLLMSDSIFRGRDFLARRRFVDLVESVKAKGGRFLCFSSLH
VTGEKLHQLGGVAAVLRFPLEIEMEEEDLPLEEGGKGSSSNGVCGGGGRG
SNKDGDVGDFYSGEPIEQHEDEDREERHRAVEEEGMEAIREATDLEGMGL
*

Synonyms

Publications